HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-SEP-13 4MNF TITLE CRYSTAL STRUCTURE OF BRAF-V600E BOUND TO GDC0879 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 432-736); COMPND 5 SYNONYM: BRAF, PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL COMPND 6 ONCOGENE HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS RAF, MAPK, KINASE DOMAIN, ATP-BINDING, ERK, RAS, PAK, ACTIVE KEYWDS 2 CONFORMATION, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SUDHAMSU,J.R.HALING,T.MORALES,B.BRANDHUBER,S.G.HYMOWITZ REVDAT 4 20-SEP-23 4MNF 1 REMARK SEQADV REVDAT 3 24-SEP-14 4MNF 1 JRNL REVDAT 2 03-SEP-14 4MNF 1 JRNL REVDAT 1 18-JUN-14 4MNF 0 JRNL AUTH J.R.HALING,J.SUDHAMSU,I.YEN,S.SIDERIS,W.SANDOVAL,W.PHUNG, JRNL AUTH 2 B.J.BRAVO,A.M.GIANNETTI,A.PECK,A.MASSELOT,T.MORALES,D.SMITH, JRNL AUTH 3 B.J.BRANDHUBER,S.G.HYMOWITZ,S.MALEK JRNL TITL STRUCTURE OF THE BRAF-MEK COMPLEX REVEALS A KINASE ACTIVITY JRNL TITL 2 INDEPENDENT ROLE FOR BRAF IN MAPK SIGNALING. JRNL REF CANCER CELL V. 26 402 2014 JRNL REFN ISSN 1535-6108 JRNL PMID 25155755 JRNL DOI 10.1016/J.CCR.2014.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8779 - 5.3572 1.00 2956 147 0.2491 0.2776 REMARK 3 2 5.3572 - 4.2529 1.00 2793 149 0.1800 0.2116 REMARK 3 3 4.2529 - 3.7155 1.00 2754 151 0.1770 0.2463 REMARK 3 4 3.7155 - 3.3759 1.00 2719 160 0.1864 0.3003 REMARK 3 5 3.3759 - 3.1339 1.00 2714 145 0.2238 0.3167 REMARK 3 6 3.1339 - 2.9492 1.00 2712 141 0.2305 0.3200 REMARK 3 7 2.9492 - 2.8020 1.00 2687 151 0.2901 0.4195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4288 REMARK 3 ANGLE : 1.265 5794 REMARK 3 CHIRALITY : 0.077 634 REMARK 3 PLANARITY : 0.005 732 REMARK 3 DIHEDRAL : 14.962 1610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.802 REMARK 200 RESOLUTION RANGE LOW (A) : 49.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64300 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3Q4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M HEPES, PH 7.5, 0.5 REMARK 280 M SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.51600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.75800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.27400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.75800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.27400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.51600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 408 REMARK 465 SER A 409 REMARK 465 GLY A 410 REMARK 465 ALA A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 GLY A 422 REMARK 465 GLY A 423 REMARK 465 GLY A 424 REMARK 465 LEU A 425 REMARK 465 VAL A 426 REMARK 465 PRO A 427 REMARK 465 ARG A 428 REMARK 465 GLY A 429 REMARK 465 ALA A 430 REMARK 465 MET A 431 REMARK 465 SER A 432 REMARK 465 GLU A 433 REMARK 465 ASP A 434 REMARK 465 ARG A 435 REMARK 465 ASN A 436 REMARK 465 ARG A 437 REMARK 465 MET A 438 REMARK 465 LYS A 439 REMARK 465 THR A 440 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 ARG A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 GLY A 615 REMARK 465 LEU A 721 REMARK 465 PRO A 722 REMARK 465 LYS A 723 REMARK 465 ILE A 724 REMARK 465 HIS A 725 REMARK 465 ARG A 726 REMARK 465 SER A 727 REMARK 465 ALA A 728 REMARK 465 SER A 729 REMARK 465 GLU A 730 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 LEU A 733 REMARK 465 ASN A 734 REMARK 465 ARG A 735 REMARK 465 ALA A 736 REMARK 465 MET B 408 REMARK 465 SER B 409 REMARK 465 GLY B 410 REMARK 465 ALA B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 HIS B 416 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 GLY B 420 REMARK 465 GLY B 421 REMARK 465 GLY B 422 REMARK 465 GLY B 423 REMARK 465 GLY B 424 REMARK 465 LEU B 425 REMARK 465 VAL B 426 REMARK 465 PRO B 427 REMARK 465 ARG B 428 REMARK 465 GLY B 429 REMARK 465 ALA B 430 REMARK 465 MET B 431 REMARK 465 SER B 432 REMARK 465 GLU B 433 REMARK 465 ASP B 434 REMARK 465 ARG B 435 REMARK 465 ASN B 436 REMARK 465 ARG B 437 REMARK 465 MET B 438 REMARK 465 LYS B 439 REMARK 465 THR B 440 REMARK 465 LEU B 441 REMARK 465 GLY B 442 REMARK 465 ARG B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 GLY B 615 REMARK 465 LEU B 721 REMARK 465 PRO B 722 REMARK 465 LYS B 723 REMARK 465 ILE B 724 REMARK 465 HIS B 725 REMARK 465 ARG B 726 REMARK 465 SER B 727 REMARK 465 ALA B 728 REMARK 465 SER B 729 REMARK 465 GLU B 730 REMARK 465 PRO B 731 REMARK 465 SER B 732 REMARK 465 LEU B 733 REMARK 465 ASN B 734 REMARK 465 ARG B 735 REMARK 465 ALA B 736 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 493 CD REMARK 480 LYS A 630 CD REMARK 480 LYS A 687 CE REMARK 480 GLN B 493 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 623 O HOH A 955 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 677 NZ LYS B 680 3545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 486 82.78 -66.85 REMARK 500 ARG A 509 94.17 -161.58 REMARK 500 HIS A 510 145.10 -172.10 REMARK 500 ARG A 575 -10.07 76.68 REMARK 500 ASP A 576 38.97 -143.41 REMARK 500 LEU A 588 -49.82 -147.25 REMARK 500 ASP A 594 78.28 64.87 REMARK 500 ARG A 719 96.32 -65.86 REMARK 500 SER B 467 -86.06 -87.77 REMARK 500 PHE B 468 50.50 -107.85 REMARK 500 TRP B 476 90.26 -168.34 REMARK 500 ASN B 486 49.38 -69.33 REMARK 500 ILE B 543 -50.76 -126.47 REMARK 500 ASP B 576 32.79 -142.49 REMARK 500 SER B 579 1.30 -68.77 REMARK 500 HIS B 585 108.62 -164.08 REMARK 500 ASP B 587 -6.40 40.02 REMARK 500 ASP B 594 92.47 63.73 REMARK 500 LYS B 630 -104.29 -46.22 REMARK 500 ARG B 719 45.97 -92.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29L A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29L B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MNE RELATED DB: PDB DBREF 4MNF A 432 736 UNP P15056 BRAF_HUMAN 432 736 DBREF 4MNF B 432 736 UNP P15056 BRAF_HUMAN 432 736 SEQADV 4MNF MET A 408 UNP P15056 EXPRESSION TAG SEQADV 4MNF SER A 409 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 410 UNP P15056 EXPRESSION TAG SEQADV 4MNF ALA A 411 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 412 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 413 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 414 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 415 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 416 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 417 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 418 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS A 419 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 420 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 421 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 422 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 423 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 424 UNP P15056 EXPRESSION TAG SEQADV 4MNF LEU A 425 UNP P15056 EXPRESSION TAG SEQADV 4MNF VAL A 426 UNP P15056 EXPRESSION TAG SEQADV 4MNF PRO A 427 UNP P15056 EXPRESSION TAG SEQADV 4MNF ARG A 428 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY A 429 UNP P15056 EXPRESSION TAG SEQADV 4MNF ALA A 430 UNP P15056 EXPRESSION TAG SEQADV 4MNF MET A 431 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 4MNF MET B 408 UNP P15056 EXPRESSION TAG SEQADV 4MNF SER B 409 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 410 UNP P15056 EXPRESSION TAG SEQADV 4MNF ALA B 411 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 412 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 413 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 414 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 415 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 416 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 417 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 418 UNP P15056 EXPRESSION TAG SEQADV 4MNF HIS B 419 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 420 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 421 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 422 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 423 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 424 UNP P15056 EXPRESSION TAG SEQADV 4MNF LEU B 425 UNP P15056 EXPRESSION TAG SEQADV 4MNF VAL B 426 UNP P15056 EXPRESSION TAG SEQADV 4MNF PRO B 427 UNP P15056 EXPRESSION TAG SEQADV 4MNF ARG B 428 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLY B 429 UNP P15056 EXPRESSION TAG SEQADV 4MNF ALA B 430 UNP P15056 EXPRESSION TAG SEQADV 4MNF MET B 431 UNP P15056 EXPRESSION TAG SEQADV 4MNF GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQRES 1 A 329 MET SER GLY ALA HIS HIS HIS HIS HIS HIS HIS HIS GLY SEQRES 2 A 329 GLY GLY GLY GLY LEU VAL PRO ARG GLY ALA MET SER GLU SEQRES 3 A 329 ASP ARG ASN ARG MET LYS THR LEU GLY ARG ARG ASP SER SEQRES 4 A 329 SER ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL SEQRES 5 A 329 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR SEQRES 6 A 329 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU SEQRES 7 A 329 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE SEQRES 8 A 329 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL SEQRES 9 A 329 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN SEQRES 10 A 329 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU SEQRES 11 A 329 TYR HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET SEQRES 12 A 329 ILE LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY SEQRES 13 A 329 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP SEQRES 14 A 329 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR SEQRES 15 A 329 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER SEQRES 16 A 329 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SEQRES 17 A 329 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN SEQRES 18 A 329 ASP LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA SEQRES 19 A 329 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU SEQRES 20 A 329 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE SEQRES 21 A 329 MET VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS SEQRES 22 A 329 VAL ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET SEQRES 23 A 329 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU SEQRES 24 A 329 PHE PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SEQRES 25 A 329 SER LEU PRO LYS ILE HIS ARG SER ALA SER GLU PRO SER SEQRES 26 A 329 LEU ASN ARG ALA SEQRES 1 B 329 MET SER GLY ALA HIS HIS HIS HIS HIS HIS HIS HIS GLY SEQRES 2 B 329 GLY GLY GLY GLY LEU VAL PRO ARG GLY ALA MET SER GLU SEQRES 3 B 329 ASP ARG ASN ARG MET LYS THR LEU GLY ARG ARG ASP SER SEQRES 4 B 329 SER ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL SEQRES 5 B 329 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR SEQRES 6 B 329 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU SEQRES 7 B 329 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE SEQRES 8 B 329 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL SEQRES 9 B 329 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN SEQRES 10 B 329 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU SEQRES 11 B 329 TYR HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET SEQRES 12 B 329 ILE LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY SEQRES 13 B 329 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP SEQRES 14 B 329 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR SEQRES 15 B 329 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER SEQRES 16 B 329 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SEQRES 17 B 329 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN SEQRES 18 B 329 ASP LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA SEQRES 19 B 329 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU SEQRES 20 B 329 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE SEQRES 21 B 329 MET VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS SEQRES 22 B 329 VAL ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET SEQRES 23 B 329 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU SEQRES 24 B 329 PHE PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SEQRES 25 B 329 SER LEU PRO LYS ILE HIS ARG SER ALA SER GLU PRO SER SEQRES 26 B 329 LEU ASN ARG ALA HET 29L A 801 25 HET 29L B 801 25 HET CL B 802 1 HETNAM 29L 2-{4-[(1E)-1-(HYDROXYIMINO)-2,3-DIHYDRO-1H-INDEN-5-YL]- HETNAM 2 29L 3-(PYRIDIN-4-YL)-1H-PYRAZOL-1-YL}ETHANOL HETNAM CL CHLORIDE ION FORMUL 3 29L 2(C19 H18 N4 O2) FORMUL 5 CL CL 1- FORMUL 6 HOH *80(H2 O) HELIX 1 1 THR A 491 ARG A 506 1 16 HELIX 2 2 SER A 536 ILE A 543 1 8 HELIX 3 3 GLU A 549 LYS A 570 1 22 HELIX 4 4 GLU A 586 LEU A 588 5 3 HELIX 5 5 SER A 616 MET A 620 5 5 HELIX 6 6 ALA A 621 MET A 627 1 7 HELIX 7 7 SER A 634 GLY A 652 1 19 HELIX 8 8 ASN A 661 ARG A 671 1 11 HELIX 9 9 ASP A 677 VAL A 681 5 5 HELIX 10 10 PRO A 686 LEU A 697 1 12 HELIX 11 11 LYS A 700 ARG A 704 5 5 HELIX 12 12 LEU A 706 ARG A 719 1 14 HELIX 13 13 THR B 491 ARG B 506 1 16 HELIX 14 14 SER B 536 ILE B 543 1 8 HELIX 15 15 GLU B 549 ALA B 569 1 21 HELIX 16 16 SER B 616 MET B 620 5 5 HELIX 17 17 ALA B 621 MET B 627 1 7 HELIX 18 18 SER B 634 GLY B 652 1 19 HELIX 19 19 ASN B 661 ARG B 671 1 11 HELIX 20 20 ASP B 677 VAL B 681 5 5 HELIX 21 21 PRO B 686 LEU B 697 1 12 HELIX 22 22 LYS B 700 ARG B 704 5 5 HELIX 23 23 LEU B 706 ALA B 718 1 13 SHEET 1 A 5 THR A 458 SER A 465 0 SHEET 2 A 5 THR A 470 LYS A 475 -1 O VAL A 471 N GLY A 464 SHEET 3 A 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 A 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 A 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 B 2 ILE A 582 HIS A 585 0 SHEET 2 B 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 C 5 THR B 458 GLY B 464 0 SHEET 2 C 5 THR B 470 LYS B 475 -1 O VAL B 471 N ILE B 463 SHEET 3 C 5 ASP B 479 MET B 484 -1 O MET B 484 N THR B 470 SHEET 4 C 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 C 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 D 2 ILE B 582 HIS B 585 0 SHEET 2 D 2 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 1.75 CISPEP 2 LYS B 522 PRO B 523 0 9.58 SITE 1 AC1 11 VAL A 471 ALA A 481 GLU A 501 LEU A 514 SITE 2 AC1 11 THR A 529 TRP A 531 CYS A 532 ASN A 580 SITE 3 AC1 11 PHE A 583 ASP A 594 HOH A 917 SITE 1 AC2 10 ILE B 463 VAL B 471 LYS B 483 GLU B 501 SITE 2 AC2 10 ILE B 527 THR B 529 TRP B 531 CYS B 532 SITE 3 AC2 10 ASN B 580 PHE B 583 SITE 1 AC3 1 LYS A 591 CRYST1 99.740 99.740 159.032 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006288 0.00000