HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-SEP-13 4MNF
TITLE CRYSTAL STRUCTURE OF BRAF-V600E BOUND TO GDC0879
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 432-736);
COMPND 5 SYNONYM: BRAF, PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL
COMPND 6 ONCOGENE HOMOLOG B1;
COMPND 7 EC: 2.7.11.1;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRAF, BRAF1, RAFB1;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS
KEYWDS RAF, MAPK, KINASE DOMAIN, ATP-BINDING, ERK, RAS, PAK, ACTIVE
KEYWDS 2 CONFORMATION, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.SUDHAMSU,J.R.HALING,T.MORALES,B.BRANDHUBER,S.G.HYMOWITZ
REVDAT 4 20-SEP-23 4MNF 1 REMARK SEQADV
REVDAT 3 24-SEP-14 4MNF 1 JRNL
REVDAT 2 03-SEP-14 4MNF 1 JRNL
REVDAT 1 18-JUN-14 4MNF 0
JRNL AUTH J.R.HALING,J.SUDHAMSU,I.YEN,S.SIDERIS,W.SANDOVAL,W.PHUNG,
JRNL AUTH 2 B.J.BRAVO,A.M.GIANNETTI,A.PECK,A.MASSELOT,T.MORALES,D.SMITH,
JRNL AUTH 3 B.J.BRANDHUBER,S.G.HYMOWITZ,S.MALEK
JRNL TITL STRUCTURE OF THE BRAF-MEK COMPLEX REVEALS A KINASE ACTIVITY
JRNL TITL 2 INDEPENDENT ROLE FOR BRAF IN MAPK SIGNALING.
JRNL REF CANCER CELL V. 26 402 2014
JRNL REFN ISSN 1535-6108
JRNL PMID 25155755
JRNL DOI 10.1016/J.CCR.2014.07.007
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.87
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 20379
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.215
REMARK 3 R VALUE (WORKING SET) : 0.211
REMARK 3 FREE R VALUE : 0.275
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 1044
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 49.8779 - 5.3572 1.00 2956 147 0.2491 0.2776
REMARK 3 2 5.3572 - 4.2529 1.00 2793 149 0.1800 0.2116
REMARK 3 3 4.2529 - 3.7155 1.00 2754 151 0.1770 0.2463
REMARK 3 4 3.7155 - 3.3759 1.00 2719 160 0.1864 0.3003
REMARK 3 5 3.3759 - 3.1339 1.00 2714 145 0.2238 0.3167
REMARK 3 6 3.1339 - 2.9492 1.00 2712 141 0.2305 0.3200
REMARK 3 7 2.9492 - 2.8020 1.00 2687 151 0.2901 0.4195
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.870
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 4288
REMARK 3 ANGLE : 1.265 5794
REMARK 3 CHIRALITY : 0.077 634
REMARK 3 PLANARITY : 0.005 732
REMARK 3 DIHEDRAL : 14.962 1610
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4MNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-13.
REMARK 100 THE DEPOSITION ID IS D_1000082129.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-OCT-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL11-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.98
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20427
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.802
REMARK 200 RESOLUTION RANGE LOW (A) : 49.870
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 5.100
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.09300
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.20
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.64300
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3Q4C
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.61
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M HEPES, PH 7.5, 0.5
REMARK 280 M SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.51600
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.87000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.87000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.75800
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.87000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.87000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.27400
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.87000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.87000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.75800
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.87000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.87000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.27400
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.51600
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 408
REMARK 465 SER A 409
REMARK 465 GLY A 410
REMARK 465 ALA A 411
REMARK 465 HIS A 412
REMARK 465 HIS A 413
REMARK 465 HIS A 414
REMARK 465 HIS A 415
REMARK 465 HIS A 416
REMARK 465 HIS A 417
REMARK 465 HIS A 418
REMARK 465 HIS A 419
REMARK 465 GLY A 420
REMARK 465 GLY A 421
REMARK 465 GLY A 422
REMARK 465 GLY A 423
REMARK 465 GLY A 424
REMARK 465 LEU A 425
REMARK 465 VAL A 426
REMARK 465 PRO A 427
REMARK 465 ARG A 428
REMARK 465 GLY A 429
REMARK 465 ALA A 430
REMARK 465 MET A 431
REMARK 465 SER A 432
REMARK 465 GLU A 433
REMARK 465 ASP A 434
REMARK 465 ARG A 435
REMARK 465 ASN A 436
REMARK 465 ARG A 437
REMARK 465 MET A 438
REMARK 465 LYS A 439
REMARK 465 THR A 440
REMARK 465 LEU A 441
REMARK 465 GLY A 442
REMARK 465 ARG A 443
REMARK 465 ARG A 444
REMARK 465 ASP A 445
REMARK 465 SER A 446
REMARK 465 SER A 447
REMARK 465 ASP A 448
REMARK 465 LYS A 601
REMARK 465 SER A 602
REMARK 465 ARG A 603
REMARK 465 TRP A 604
REMARK 465 SER A 605
REMARK 465 GLY A 606
REMARK 465 SER A 607
REMARK 465 HIS A 608
REMARK 465 GLN A 609
REMARK 465 PHE A 610
REMARK 465 GLU A 611
REMARK 465 GLN A 612
REMARK 465 LEU A 613
REMARK 465 SER A 614
REMARK 465 GLY A 615
REMARK 465 LEU A 721
REMARK 465 PRO A 722
REMARK 465 LYS A 723
REMARK 465 ILE A 724
REMARK 465 HIS A 725
REMARK 465 ARG A 726
REMARK 465 SER A 727
REMARK 465 ALA A 728
REMARK 465 SER A 729
REMARK 465 GLU A 730
REMARK 465 PRO A 731
REMARK 465 SER A 732
REMARK 465 LEU A 733
REMARK 465 ASN A 734
REMARK 465 ARG A 735
REMARK 465 ALA A 736
REMARK 465 MET B 408
REMARK 465 SER B 409
REMARK 465 GLY B 410
REMARK 465 ALA B 411
REMARK 465 HIS B 412
REMARK 465 HIS B 413
REMARK 465 HIS B 414
REMARK 465 HIS B 415
REMARK 465 HIS B 416
REMARK 465 HIS B 417
REMARK 465 HIS B 418
REMARK 465 HIS B 419
REMARK 465 GLY B 420
REMARK 465 GLY B 421
REMARK 465 GLY B 422
REMARK 465 GLY B 423
REMARK 465 GLY B 424
REMARK 465 LEU B 425
REMARK 465 VAL B 426
REMARK 465 PRO B 427
REMARK 465 ARG B 428
REMARK 465 GLY B 429
REMARK 465 ALA B 430
REMARK 465 MET B 431
REMARK 465 SER B 432
REMARK 465 GLU B 433
REMARK 465 ASP B 434
REMARK 465 ARG B 435
REMARK 465 ASN B 436
REMARK 465 ARG B 437
REMARK 465 MET B 438
REMARK 465 LYS B 439
REMARK 465 THR B 440
REMARK 465 LEU B 441
REMARK 465 GLY B 442
REMARK 465 ARG B 443
REMARK 465 ARG B 444
REMARK 465 ASP B 445
REMARK 465 SER B 446
REMARK 465 SER B 447
REMARK 465 ASP B 448
REMARK 465 LYS B 601
REMARK 465 SER B 602
REMARK 465 ARG B 603
REMARK 465 TRP B 604
REMARK 465 SER B 605
REMARK 465 GLY B 606
REMARK 465 SER B 607
REMARK 465 HIS B 608
REMARK 465 GLN B 609
REMARK 465 PHE B 610
REMARK 465 GLU B 611
REMARK 465 GLN B 612
REMARK 465 LEU B 613
REMARK 465 SER B 614
REMARK 465 GLY B 615
REMARK 465 LEU B 721
REMARK 465 PRO B 722
REMARK 465 LYS B 723
REMARK 465 ILE B 724
REMARK 465 HIS B 725
REMARK 465 ARG B 726
REMARK 465 SER B 727
REMARK 465 ALA B 728
REMARK 465 SER B 729
REMARK 465 GLU B 730
REMARK 465 PRO B 731
REMARK 465 SER B 732
REMARK 465 LEU B 733
REMARK 465 ASN B 734
REMARK 465 ARG B 735
REMARK 465 ALA B 736
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLN A 493 CD
REMARK 480 LYS A 630 CD
REMARK 480 LYS A 687 CE
REMARK 480 GLN B 493 CD
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE1 GLU A 623 O HOH A 955 2.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OD2 ASP A 677 NZ LYS B 680 3545 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 486 82.78 -66.85
REMARK 500 ARG A 509 94.17 -161.58
REMARK 500 HIS A 510 145.10 -172.10
REMARK 500 ARG A 575 -10.07 76.68
REMARK 500 ASP A 576 38.97 -143.41
REMARK 500 LEU A 588 -49.82 -147.25
REMARK 500 ASP A 594 78.28 64.87
REMARK 500 ARG A 719 96.32 -65.86
REMARK 500 SER B 467 -86.06 -87.77
REMARK 500 PHE B 468 50.50 -107.85
REMARK 500 TRP B 476 90.26 -168.34
REMARK 500 ASN B 486 49.38 -69.33
REMARK 500 ILE B 543 -50.76 -126.47
REMARK 500 ASP B 576 32.79 -142.49
REMARK 500 SER B 579 1.30 -68.77
REMARK 500 HIS B 585 108.62 -164.08
REMARK 500 ASP B 587 -6.40 40.02
REMARK 500 ASP B 594 92.47 63.73
REMARK 500 LYS B 630 -104.29 -46.22
REMARK 500 ARG B 719 45.97 -92.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29L A 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29L B 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 802
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4MNE RELATED DB: PDB
DBREF 4MNF A 432 736 UNP P15056 BRAF_HUMAN 432 736
DBREF 4MNF B 432 736 UNP P15056 BRAF_HUMAN 432 736
SEQADV 4MNF MET A 408 UNP P15056 EXPRESSION TAG
SEQADV 4MNF SER A 409 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 410 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ALA A 411 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 412 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 413 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 414 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 415 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 416 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 417 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 418 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS A 419 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 420 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 421 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 422 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 423 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 424 UNP P15056 EXPRESSION TAG
SEQADV 4MNF LEU A 425 UNP P15056 EXPRESSION TAG
SEQADV 4MNF VAL A 426 UNP P15056 EXPRESSION TAG
SEQADV 4MNF PRO A 427 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ARG A 428 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY A 429 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ALA A 430 UNP P15056 EXPRESSION TAG
SEQADV 4MNF MET A 431 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION
SEQADV 4MNF MET B 408 UNP P15056 EXPRESSION TAG
SEQADV 4MNF SER B 409 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 410 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ALA B 411 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 412 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 413 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 414 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 415 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 416 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 417 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 418 UNP P15056 EXPRESSION TAG
SEQADV 4MNF HIS B 419 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 420 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 421 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 422 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 423 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 424 UNP P15056 EXPRESSION TAG
SEQADV 4MNF LEU B 425 UNP P15056 EXPRESSION TAG
SEQADV 4MNF VAL B 426 UNP P15056 EXPRESSION TAG
SEQADV 4MNF PRO B 427 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ARG B 428 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLY B 429 UNP P15056 EXPRESSION TAG
SEQADV 4MNF ALA B 430 UNP P15056 EXPRESSION TAG
SEQADV 4MNF MET B 431 UNP P15056 EXPRESSION TAG
SEQADV 4MNF GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION
SEQRES 1 A 329 MET SER GLY ALA HIS HIS HIS HIS HIS HIS HIS HIS GLY
SEQRES 2 A 329 GLY GLY GLY GLY LEU VAL PRO ARG GLY ALA MET SER GLU
SEQRES 3 A 329 ASP ARG ASN ARG MET LYS THR LEU GLY ARG ARG ASP SER
SEQRES 4 A 329 SER ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL
SEQRES 5 A 329 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR
SEQRES 6 A 329 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU
SEQRES 7 A 329 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE
SEQRES 8 A 329 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL
SEQRES 9 A 329 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN
SEQRES 10 A 329 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU
SEQRES 11 A 329 TYR HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET
SEQRES 12 A 329 ILE LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY
SEQRES 13 A 329 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP
SEQRES 14 A 329 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR
SEQRES 15 A 329 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER
SEQRES 16 A 329 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY
SEQRES 17 A 329 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN
SEQRES 18 A 329 ASP LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA
SEQRES 19 A 329 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU
SEQRES 20 A 329 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE
SEQRES 21 A 329 MET VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS
SEQRES 22 A 329 VAL ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET
SEQRES 23 A 329 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU
SEQRES 24 A 329 PHE PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG
SEQRES 25 A 329 SER LEU PRO LYS ILE HIS ARG SER ALA SER GLU PRO SER
SEQRES 26 A 329 LEU ASN ARG ALA
SEQRES 1 B 329 MET SER GLY ALA HIS HIS HIS HIS HIS HIS HIS HIS GLY
SEQRES 2 B 329 GLY GLY GLY GLY LEU VAL PRO ARG GLY ALA MET SER GLU
SEQRES 3 B 329 ASP ARG ASN ARG MET LYS THR LEU GLY ARG ARG ASP SER
SEQRES 4 B 329 SER ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL
SEQRES 5 B 329 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR
SEQRES 6 B 329 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU
SEQRES 7 B 329 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE
SEQRES 8 B 329 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL
SEQRES 9 B 329 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN
SEQRES 10 B 329 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU
SEQRES 11 B 329 TYR HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET
SEQRES 12 B 329 ILE LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY
SEQRES 13 B 329 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP
SEQRES 14 B 329 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR
SEQRES 15 B 329 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER
SEQRES 16 B 329 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY
SEQRES 17 B 329 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN
SEQRES 18 B 329 ASP LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA
SEQRES 19 B 329 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU
SEQRES 20 B 329 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE
SEQRES 21 B 329 MET VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS
SEQRES 22 B 329 VAL ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET
SEQRES 23 B 329 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU
SEQRES 24 B 329 PHE PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG
SEQRES 25 B 329 SER LEU PRO LYS ILE HIS ARG SER ALA SER GLU PRO SER
SEQRES 26 B 329 LEU ASN ARG ALA
HET 29L A 801 25
HET 29L B 801 25
HET CL B 802 1
HETNAM 29L 2-{4-[(1E)-1-(HYDROXYIMINO)-2,3-DIHYDRO-1H-INDEN-5-YL]-
HETNAM 2 29L 3-(PYRIDIN-4-YL)-1H-PYRAZOL-1-YL}ETHANOL
HETNAM CL CHLORIDE ION
FORMUL 3 29L 2(C19 H18 N4 O2)
FORMUL 5 CL CL 1-
FORMUL 6 HOH *80(H2 O)
HELIX 1 1 THR A 491 ARG A 506 1 16
HELIX 2 2 SER A 536 ILE A 543 1 8
HELIX 3 3 GLU A 549 LYS A 570 1 22
HELIX 4 4 GLU A 586 LEU A 588 5 3
HELIX 5 5 SER A 616 MET A 620 5 5
HELIX 6 6 ALA A 621 MET A 627 1 7
HELIX 7 7 SER A 634 GLY A 652 1 19
HELIX 8 8 ASN A 661 ARG A 671 1 11
HELIX 9 9 ASP A 677 VAL A 681 5 5
HELIX 10 10 PRO A 686 LEU A 697 1 12
HELIX 11 11 LYS A 700 ARG A 704 5 5
HELIX 12 12 LEU A 706 ARG A 719 1 14
HELIX 13 13 THR B 491 ARG B 506 1 16
HELIX 14 14 SER B 536 ILE B 543 1 8
HELIX 15 15 GLU B 549 ALA B 569 1 21
HELIX 16 16 SER B 616 MET B 620 5 5
HELIX 17 17 ALA B 621 MET B 627 1 7
HELIX 18 18 SER B 634 GLY B 652 1 19
HELIX 19 19 ASN B 661 ARG B 671 1 11
HELIX 20 20 ASP B 677 VAL B 681 5 5
HELIX 21 21 PRO B 686 LEU B 697 1 12
HELIX 22 22 LYS B 700 ARG B 704 5 5
HELIX 23 23 LEU B 706 ALA B 718 1 13
SHEET 1 A 5 THR A 458 SER A 465 0
SHEET 2 A 5 THR A 470 LYS A 475 -1 O VAL A 471 N GLY A 464
SHEET 3 A 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470
SHEET 4 A 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483
SHEET 5 A 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528
SHEET 1 B 2 ILE A 582 HIS A 585 0
SHEET 2 B 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583
SHEET 1 C 5 THR B 458 GLY B 464 0
SHEET 2 C 5 THR B 470 LYS B 475 -1 O VAL B 471 N ILE B 463
SHEET 3 C 5 ASP B 479 MET B 484 -1 O MET B 484 N THR B 470
SHEET 4 C 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481
SHEET 5 C 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528
SHEET 1 D 2 ILE B 582 HIS B 585 0
SHEET 2 D 2 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583
CISPEP 1 LYS A 522 PRO A 523 0 1.75
CISPEP 2 LYS B 522 PRO B 523 0 9.58
SITE 1 AC1 11 VAL A 471 ALA A 481 GLU A 501 LEU A 514
SITE 2 AC1 11 THR A 529 TRP A 531 CYS A 532 ASN A 580
SITE 3 AC1 11 PHE A 583 ASP A 594 HOH A 917
SITE 1 AC2 10 ILE B 463 VAL B 471 LYS B 483 GLU B 501
SITE 2 AC2 10 ILE B 527 THR B 529 TRP B 531 CYS B 532
SITE 3 AC2 10 ASN B 580 PHE B 583
SITE 1 AC3 1 LYS A 591
CRYST1 99.740 99.740 159.032 90.00 90.00 90.00 P 41 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010026 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010026 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006288 0.00000