HEADER OXIDOREDUCTASE 12-SEP-13 4MOF TITLE PYRANOSE 2-OXIDASE H450G MUTANT WITH 2-FLUORINATED GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRANOSE 2-OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYRANOSE OXIDASE; COMPND 5 EC: 1.1.3.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES OCHRACEA; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 230624; SOURCE 5 GENE: P2O; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(D+) KEYWDS GMC OXIDOREDUCTASE, PHBH FOLD, HOMOTETRAMER, FAD-BINDING, SUBSTRATE KEYWDS 2 COMPLEX, FLAVINYLATION, INTRACELLULAR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.TAN,O.SPADIUT,R.GANDINI,D.HALTRICH,C.DIVNE REVDAT 4 06-NOV-24 4MOF 1 HETSYN REVDAT 3 29-JUL-20 4MOF 1 REMARK SEQADV LINK SITE REVDAT 2 07-MAR-18 4MOF 1 REMARK REVDAT 1 05-FEB-14 4MOF 0 JRNL AUTH T.C.TAN,O.SPADIUT,R.GANDINI,D.HALTRICH,C.DIVNE JRNL TITL STRUCTURAL BASIS FOR BINDING OF FLUORINATED GLUCOSE AND JRNL TITL 2 GALACTOSE TO TRAMETES MULTICOLOR PYRANOSE 2-OXIDASE VARIANTS JRNL TITL 3 WITH IMPROVED GALACTOSE CONVERSION. JRNL REF PLOS ONE V. 9 86736 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24466218 JRNL DOI 10.1371/JOURNAL.PONE.0086736 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 56649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4698 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3161 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6393 ; 1.977 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7700 ; 1.042 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 6.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;38.427 ;24.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;13.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.450 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5214 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 950 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 62.1631 47.3042 39.7882 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0336 REMARK 3 T33: 0.0266 T12: 0.0012 REMARK 3 T13: 0.0063 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2383 L22: 0.1600 REMARK 3 L33: 0.2069 L12: 0.0711 REMARK 3 L13: -0.0467 L23: -0.1300 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0223 S13: -0.0007 REMARK 3 S21: -0.0226 S22: 0.0020 S23: 0.0077 REMARK 3 S31: 0.0117 S32: -0.0024 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 70.3807 64.4617 32.4235 REMARK 3 T TENSOR REMARK 3 T11: 0.0556 T22: 0.0615 REMARK 3 T33: 0.0301 T12: -0.0089 REMARK 3 T13: 0.0172 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.3225 L22: 0.5930 REMARK 3 L33: 0.3462 L12: -0.1878 REMARK 3 L13: -0.1179 L23: 0.2066 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0445 S13: 0.0385 REMARK 3 S21: -0.0523 S22: -0.0225 S23: -0.0221 REMARK 3 S31: -0.0676 S32: 0.0144 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): 77.5970 38.2871 32.3887 REMARK 3 T TENSOR REMARK 3 T11: 0.0525 T22: 0.0271 REMARK 3 T33: 0.0666 T12: 0.0204 REMARK 3 T13: 0.0106 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.9780 L22: 1.3552 REMARK 3 L33: 0.9196 L12: -0.1880 REMARK 3 L13: -0.2384 L23: 0.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0608 S13: -0.1897 REMARK 3 S21: -0.0254 S22: -0.0340 S23: 0.0002 REMARK 3 S31: 0.1566 S32: 0.1146 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 469 REMARK 3 ORIGIN FOR THE GROUP (A): 54.0544 78.6398 49.7689 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0513 REMARK 3 T33: 0.0587 T12: -0.0078 REMARK 3 T13: -0.0019 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.2765 L22: 0.8348 REMARK 3 L33: 0.4275 L12: -0.7516 REMARK 3 L13: -0.0249 L23: -0.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0394 S13: 0.1050 REMARK 3 S21: 0.0042 S22: -0.0062 S23: 0.0639 REMARK 3 S31: -0.0739 S32: -0.0982 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 470 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): 77.0430 53.7521 42.0317 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.0440 REMARK 3 T33: 0.0461 T12: -0.0042 REMARK 3 T13: 0.0098 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3874 L22: 0.3421 REMARK 3 L33: 0.4174 L12: -0.1410 REMARK 3 L13: -0.1077 L23: 0.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.0239 S13: -0.0381 REMARK 3 S21: -0.0237 S22: 0.0050 S23: -0.0382 REMARK 3 S31: 0.0207 S32: 0.0543 S33: -0.0089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9600 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR, SI REMARK 200 (111) REMARK 200 OPTICS : RH-COATED SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 54.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 50MM MGCL2, 10% (W/V) REMARK 280 MONOMETHYLETHER PEG 2000 , PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.17000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.25500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.17000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.25500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.25500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.25500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.34000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 102.34000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 128.51000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 102.34000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 102.34000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 128.51000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 PHE A 10 REMARK 465 ASN A 11 REMARK 465 PHE A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 LEU A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 ASP A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 MET A 43 REMARK 465 ASP A 44 REMARK 465 ILE A 45 REMARK 465 THR A 619 REMARK 465 SER A 620 REMARK 465 GLU A 621 REMARK 465 ALA A 622 REMARK 465 ALA A 623 REMARK 465 ALA A 624 REMARK 465 ALA A 625 REMARK 465 LEU A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 HIS A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 81 CB ASP A 81 CG -0.184 REMARK 500 ASP A 211 CG ASP A 211 OD1 0.161 REMARK 500 HIS A 219 CG HIS A 219 CD2 0.064 REMARK 500 HIS A 299 CG HIS A 299 CD2 0.080 REMARK 500 HIS A 446 CG HIS A 446 CD2 0.066 REMARK 500 GLU A 478 CD GLU A 478 OE2 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 139 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 211 CB - CG - OD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP A 211 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 489 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 58.12 -146.77 REMARK 500 ASP A 101 -9.16 -59.24 REMARK 500 LEU A 152 79.19 -108.85 REMARK 500 ASP A 187 84.26 -160.34 REMARK 500 LYS A 490 -51.10 -123.41 REMARK 500 HIS A 553 58.46 -149.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 436 THR A 437 149.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TT0 RELATED DB: PDB REMARK 900 RELATED ID: 2IGO RELATED DB: PDB REMARK 900 RELATED ID: 4MOE RELATED DB: PDB REMARK 900 RELATED ID: 4MOG RELATED DB: PDB REMARK 900 RELATED ID: 4MOH RELATED DB: PDB REMARK 900 RELATED ID: 4MOI RELATED DB: PDB REMARK 900 RELATED ID: 4MOJ RELATED DB: PDB REMARK 900 RELATED ID: 4MOK RELATED DB: PDB REMARK 900 RELATED ID: 4MOL RELATED DB: PDB REMARK 900 RELATED ID: 4MOM RELATED DB: PDB REMARK 900 RELATED ID: 4MOO RELATED DB: PDB REMARK 900 RELATED ID: 4MOP RELATED DB: PDB REMARK 900 RELATED ID: 4MOQ RELATED DB: PDB REMARK 900 RELATED ID: 4MOR RELATED DB: PDB REMARK 900 RELATED ID: 4MOS RELATED DB: PDB REMARK 900 RELATED ID: 3PL8 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A CLONING ARTIFACT DBREF 4MOF A 1 622 UNP Q7ZA32 Q7ZA32_TRAOC 1 622 SEQADV 4MOF ALA A 2 UNP Q7ZA32 SER 2 SEE REMARK 999 SEQADV 4MOF GLY A 450 UNP Q7ZA32 HIS 450 ENGINEERED MUTATION SEQADV 4MOF ALA A 623 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF ALA A 624 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF ALA A 625 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF LEU A 626 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF GLU A 627 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 628 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 629 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 630 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 631 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 632 UNP Q7ZA32 EXPRESSION TAG SEQADV 4MOF HIS A 633 UNP Q7ZA32 EXPRESSION TAG SEQRES 1 A 633 MET ALA THR SER SER SER ASP PRO PHE PHE ASN PHE ALA SEQRES 2 A 633 LYS SER SER PHE ARG SER ALA ALA ALA GLN LYS ALA SER SEQRES 3 A 633 ALA SER SER LEU PRO PRO LEU PRO GLY PRO ASP LYS LYS SEQRES 4 A 633 VAL PRO GLY MET ASP ILE LYS TYR ASP VAL VAL ILE VAL SEQRES 5 A 633 GLY SER GLY PRO ILE GLY CYS THR TYR ALA ARG GLU LEU SEQRES 6 A 633 VAL GLY ALA GLY TYR LYS VAL ALA MET PHE ASP ILE GLY SEQRES 7 A 633 GLU ILE ASP SER GLY LEU LYS ILE GLY ALA HIS LYS LYS SEQRES 8 A 633 ASN THR VAL GLU TYR GLN LYS ASN ILE ASP LYS PHE VAL SEQRES 9 A 633 ASN VAL ILE GLN GLY GLN LEU MET SER VAL SER VAL PRO SEQRES 10 A 633 VAL ASN THR LEU VAL VAL ASP THR LEU SER PRO THR SER SEQRES 11 A 633 TRP GLN ALA SER THR PHE PHE VAL ARG ASN GLY SER ASN SEQRES 12 A 633 PRO GLU GLN ASP PRO LEU ARG ASN LEU SER GLY GLN ALA SEQRES 13 A 633 VAL THR ARG VAL VAL GLY GLY MET SER THR HIS TRP THR SEQRES 14 A 633 CYS ALA THR PRO ARG PHE ASP ARG GLU GLN ARG PRO LEU SEQRES 15 A 633 LEU VAL LYS ASP ASP ALA ASP ALA ASP ASP ALA GLU TRP SEQRES 16 A 633 ASP ARG LEU TYR THR LYS ALA GLU SER TYR PHE GLN THR SEQRES 17 A 633 GLY THR ASP GLN PHE LYS GLU SER ILE ARG HIS ASN LEU SEQRES 18 A 633 VAL LEU ASN LYS LEU THR GLU GLU TYR LYS GLY GLN ARG SEQRES 19 A 633 ASP PHE GLN GLN ILE PRO LEU ALA ALA THR ARG ARG SER SEQRES 20 A 633 PRO THR PHE VAL GLU TRP SER SER ALA ASN THR VAL PHE SEQRES 21 A 633 ASP LEU GLN ASN ARG PRO ASN THR ASP ALA PRO GLU GLU SEQRES 22 A 633 ARG PHE ASN LEU PHE PRO ALA VAL ALA CYS GLU ARG VAL SEQRES 23 A 633 VAL ARG ASN ALA LEU ASN SER GLU ILE GLU SER LEU HIS SEQRES 24 A 633 ILE HIS ASP LEU ILE SER GLY ASP ARG PHE GLU ILE LYS SEQRES 25 A 633 ALA ASP VAL TYR VAL LEU THR ALA GLY ALA VAL HIS ASN SEQRES 26 A 633 THR GLN LEU LEU VAL ASN SER GLY PHE GLY GLN LEU GLY SEQRES 27 A 633 ARG PRO ASN PRO ALA ASN PRO PRO GLU LEU LEU PRO SER SEQRES 28 A 633 LEU GLY SER TYR ILE THR GLU GLN SER LEU VAL PHE CYS SEQRES 29 A 633 GLN THR VAL MET SER THR GLU LEU ILE ASP SER VAL LYS SEQRES 30 A 633 SER ASP MET THR ILE ARG GLY THR PRO GLY GLU LEU THR SEQRES 31 A 633 TYR SER VAL THR TYR THR PRO GLY ALA SER THR ASN LYS SEQRES 32 A 633 HIS PRO ASP TRP TRP ASN GLU LYS VAL LYS ASN HIS MET SEQRES 33 A 633 MET GLN HIS GLN GLU ASP PRO LEU PRO ILE PRO PHE GLU SEQRES 34 A 633 ASP PRO GLU PRO GLN VAL THR THR LEU PHE GLN PRO SER SEQRES 35 A 633 HIS PRO TRP HIS THR GLN ILE GLY ARG ASP ALA PHE SER SEQRES 36 A 633 TYR GLY ALA VAL GLN GLN SER ILE ASP SER ARG LEU ILE SEQRES 37 A 633 VAL ASP TRP ARG PHE PHE GLY ARG THR GLU PRO LYS GLU SEQRES 38 A 633 GLU ASN LYS LEU TRP PHE SER ASP LYS ILE THR ASP ALA SEQRES 39 A 633 TYR ASN MET PRO GLN PRO THR PHE ASP PHE ARG PHE PRO SEQRES 40 A 633 ALA GLY ARG THR SER LYS GLU ALA GLU ASP MET MET THR SEQRES 41 A 633 ASP MET CYS VAL MET SER ALA LYS ILE GLY GLY PHE LEU SEQRES 42 A 633 PRO GLY SER LEU PRO GLN PHE MET GLU PRO GLY LEU VAL SEQRES 43 A 633 LEU HIS LEU GLY GLY THR HIS ARG MET GLY PHE ASP GLU SEQRES 44 A 633 LYS GLU ASP ASN CYS CYS VAL ASN THR ASP SER ARG VAL SEQRES 45 A 633 PHE GLY PHE LYS ASN LEU PHE LEU GLY GLY CYS GLY ASN SEQRES 46 A 633 ILE PRO THR ALA TYR GLY ALA ASN PRO THR LEU THR ALA SEQRES 47 A 633 MET SER LEU ALA ILE LYS SER CYS GLU TYR ILE LYS GLN SEQRES 48 A 633 ASN PHE THR PRO SER PRO PHE THR SER GLU ALA ALA ALA SEQRES 49 A 633 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET FDA A 801 53 HET G2F A 802 12 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE HETSYN G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 G2F GLUCOSE; 2-DEOXY-2-FLUORO-GLUCOSE FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 G2F C6 H11 F O5 FORMUL 4 HOH *622(H2 O) HELIX 1 1 GLY A 55 ALA A 68 1 14 HELIX 2 2 THR A 93 ASN A 99 1 7 HELIX 3 3 ILE A 100 LYS A 102 5 3 HELIX 4 4 PHE A 103 GLN A 110 1 8 HELIX 5 5 GLY A 162 HIS A 167 5 6 HELIX 6 6 ASP A 176 ARG A 180 5 5 HELIX 7 7 ASP A 187 GLN A 207 1 21 HELIX 8 8 SER A 216 TYR A 230 1 15 HELIX 9 9 SER A 255 PHE A 260 1 6 HELIX 10 10 GLY A 321 ASN A 331 1 11 HELIX 11 11 SER A 369 LYS A 377 1 9 HELIX 12 12 PRO A 405 HIS A 419 1 15 HELIX 13 13 ASP A 464 ARG A 466 5 3 HELIX 14 14 GLY A 509 ALA A 527 1 19 HELIX 15 15 GLY A 582 ILE A 586 5 5 HELIX 16 16 PRO A 594 PHE A 613 1 20 SHEET 1 A 6 ARG A 265 ASN A 267 0 SHEET 2 A 6 ALA A 270 PHE A 278 -1 O PHE A 275 N ARG A 265 SHEET 3 A 6 LYS A 71 PHE A 75 1 N MET A 74 O PHE A 278 SHEET 4 A 6 TYR A 47 VAL A 52 1 N VAL A 49 O ALA A 73 SHEET 5 A 6 ALA A 313 LEU A 318 1 O VAL A 317 N VAL A 50 SHEET 6 A 6 LEU A 578 LEU A 580 1 O PHE A 579 N LEU A 318 SHEET 1 B 2 MET A 112 SER A 113 0 SHEET 2 B 2 ALA A 156 VAL A 157 -1 O VAL A 157 N MET A 112 SHEET 1 C 3 THR A 208 GLY A 209 0 SHEET 2 C 3 LEU A 241 SER A 247 -1 O LEU A 241 N GLY A 209 SHEET 3 C 3 PHE A 250 TRP A 253 -1 O PHE A 250 N ARG A 246 SHEET 1 D 6 GLN A 237 GLN A 238 0 SHEET 2 D 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 D 6 TRP A 445 GLY A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 D 6 ILE A 468 GLY A 475 -1 O ASP A 470 N GLY A 450 SHEET 5 D 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 D 6 GLY A 530 PHE A 532 -1 O GLY A 531 N VAL A 367 SHEET 1 E 6 GLN A 237 GLN A 238 0 SHEET 2 E 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 E 6 TRP A 445 GLY A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 E 6 ILE A 468 GLY A 475 -1 O ASP A 470 N GLY A 450 SHEET 5 E 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 E 6 GLN A 539 PHE A 540 -1 O GLN A 539 N PHE A 363 SHEET 1 F 3 VAL A 281 ARG A 288 0 SHEET 2 F 3 ILE A 295 ASP A 302 -1 O HIS A 299 N ARG A 285 SHEET 3 F 3 ARG A 308 ILE A 311 -1 O PHE A 309 N ILE A 300 SHEET 1 G 2 THR A 381 ARG A 383 0 SHEET 2 G 2 SER A 392 THR A 394 -1 O THR A 394 N THR A 381 SHEET 1 H 2 LYS A 484 THR A 492 0 SHEET 2 H 2 PRO A 498 ASP A 503 -1 O THR A 501 N TRP A 486 LINK NE2 HIS A 167 C8M FDA A 801 1555 1555 1.46 CISPEP 1 ARG A 265 PRO A 266 0 9.74 CRYST1 102.340 102.340 128.510 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007781 0.00000