HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-SEP-13 4MP7 TITLE CRYSTAL STRUCTURE OF PYRUVATE DEHYDROGENASE KINASE ISOFORM 2 IN TITLE 2 COMPLEX WITH INHIBITOR PA7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: [PYRUVATE DEHYDROGENASE [LIPOAMIDE]] KINASE ISOZYME 2, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PYRUVATE DEHYDROGENASE KINASE ISOFORM 2, PDH KINASE 2, COMPND 6 PDKII; COMPND 7 EC: 2.7.11.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDK2, PDHK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GHKL PROTEIN KINASE, PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL KEYWDS 2 PROTEIN KINASES, IMPAIRED GLUCOSE OXIDATION, HEPATIC STEATOSIS, TYPE KEYWDS 3 2 DIABETES, CANCER, BERGERAT NUCLEOTIDE-BINDING FOLD, PROTEIN KEYWDS 4 KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.J.GUI,S.C.TSO,J.L.CHUANG,C.Y.WU,X.QI,U.K.TAMBAR,R.M.WYNN,D.T.CHUANG REVDAT 3 28-FEB-24 4MP7 1 REMARK SEQADV REVDAT 2 05-MAR-14 4MP7 1 JRNL REVDAT 1 01-JAN-14 4MP7 0 JRNL AUTH S.C.TSO,X.QI,W.J.GUI,C.Y.WU,J.L.CHUANG, JRNL AUTH 2 I.WERNSTEDT-ASTERHOLM,L.K.MORLOCK,K.R.OWENS,P.E.SCHERER, JRNL AUTH 3 N.S.WILLIAMS,U.K.TAMBAR,R.M.WYNN,D.T.CHUANG JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF SPECIFIC PYRUVATE JRNL TITL 2 DEHYDROGENASE KINASE INHIBITORS TARGETING THE ATP-BINDING JRNL TITL 3 POCKET. JRNL REF J.BIOL.CHEM. V. 289 4432 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24356970 JRNL DOI 10.1074/JBC.M113.533885 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0244 - 4.3346 0.99 4708 150 0.2039 0.2155 REMARK 3 2 4.3346 - 3.4417 1.00 4565 146 0.1756 0.2006 REMARK 3 3 3.4417 - 3.0069 1.00 4525 144 0.1875 0.2015 REMARK 3 4 3.0069 - 2.7322 1.00 4507 144 0.1936 0.1991 REMARK 3 5 2.7322 - 2.5364 1.00 4478 143 0.1923 0.1822 REMARK 3 6 2.5364 - 2.3869 1.00 4459 142 0.1870 0.2095 REMARK 3 7 2.3869 - 2.2674 1.00 4503 144 0.1774 0.1887 REMARK 3 8 2.2674 - 2.1687 1.00 4424 140 0.1802 0.2024 REMARK 3 9 2.1687 - 2.0852 1.00 4441 142 0.1784 0.2220 REMARK 3 10 2.0852 - 2.0133 1.00 4468 143 0.1827 0.2029 REMARK 3 11 2.0133 - 1.9504 1.00 4427 141 0.1854 0.2006 REMARK 3 12 1.9504 - 1.8946 1.00 4406 140 0.2068 0.1942 REMARK 3 13 1.8946 - 1.8447 1.00 4439 142 0.2293 0.2275 REMARK 3 14 1.8447 - 1.7997 0.99 4361 139 0.2793 0.2978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16300 REMARK 3 B22 (A**2) : 1.16300 REMARK 3 B33 (A**2) : -2.32600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3074 REMARK 3 ANGLE : 1.018 4176 REMARK 3 CHIRALITY : 0.069 456 REMARK 3 PLANARITY : 0.004 537 REMARK 3 DIHEDRAL : 13.462 1166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.5811 17.1606 -25.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0993 REMARK 3 T33: 0.1061 T12: 0.0127 REMARK 3 T13: 0.0054 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8621 L22: 0.8102 REMARK 3 L33: 1.7126 L12: 0.2341 REMARK 3 L13: 0.3059 L23: 0.5916 REMARK 3 S TENSOR REMARK 3 S11: -0.0959 S12: -0.0584 S13: 0.1384 REMARK 3 S21: -0.0277 S22: 0.0255 S23: 0.0240 REMARK 3 S31: -0.2062 S32: -0.0514 S33: 0.0396 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64743 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.91100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M AMMONIUM TARTRATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.00350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.87200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.93600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.00350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.80800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 170.80800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.00350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.93600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.00350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.87200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.00350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 113.87200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.00350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 170.80800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 56.93600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.00350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 56.93600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 170.80800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.00350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.00350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 113.87200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 ASN A 181 REMARK 465 ALA A 311 REMARK 465 PRO A 312 REMARK 465 THR A 313 REMARK 465 PRO A 314 REMARK 465 GLN A 315 REMARK 465 PRO A 316 REMARK 465 GLY A 317 REMARK 465 THR A 318 REMARK 465 GLY A 319 REMARK 465 GLY A 320 REMARK 465 THR A 321 REMARK 465 PRO A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 465 GLY A 325 REMARK 465 PHE A 326 REMARK 465 SER A 395 REMARK 465 THR A 396 REMARK 465 GLU A 397 REMARK 465 PRO A 398 REMARK 465 LYS A 399 REMARK 465 ASN A 400 REMARK 465 THR A 401 REMARK 465 SER A 402 REMARK 465 THR A 403 REMARK 465 TYR A 404 REMARK 465 ARG A 405 REMARK 465 VAL A 406 REMARK 465 SER A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 352 -64.48 -123.55 REMARK 500 GLN A 383 74.39 -66.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MP2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT INHIBITOR REMARK 900 RELATED ID: 4MPC RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT INHIBITOR REMARK 900 RELATED ID: 4MPE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT INHIBITOR DBREF 4MP7 A 9 407 UNP Q15119 PDK2_HUMAN 9 407 SEQADV 4MP7 SER A 8 UNP Q15119 EXPRESSION TAG SEQRES 1 A 400 SER LYS ASN ALA SER LEU ALA GLY ALA PRO LYS TYR ILE SEQRES 2 A 400 GLU HIS PHE SER LYS PHE SER PRO SER PRO LEU SER MET SEQRES 3 A 400 LYS GLN PHE LEU ASP PHE GLY SER SER ASN ALA CYS GLU SEQRES 4 A 400 LYS THR SER PHE THR PHE LEU ARG GLN GLU LEU PRO VAL SEQRES 5 A 400 ARG LEU ALA ASN ILE MET LYS GLU ILE ASN LEU LEU PRO SEQRES 6 A 400 ASP ARG VAL LEU SER THR PRO SER VAL GLN LEU VAL GLN SEQRES 7 A 400 SER TRP TYR VAL GLN SER LEU LEU ASP ILE MET GLU PHE SEQRES 8 A 400 LEU ASP LYS ASP PRO GLU ASP HIS ARG THR LEU SER GLN SEQRES 9 A 400 PHE THR ASP ALA LEU VAL THR ILE ARG ASN ARG HIS ASN SEQRES 10 A 400 ASP VAL VAL PRO THR MET ALA GLN GLY VAL LEU GLU TYR SEQRES 11 A 400 LYS ASP THR TYR GLY ASP ASP PRO VAL SER ASN GLN ASN SEQRES 12 A 400 ILE GLN TYR PHE LEU ASP ARG PHE TYR LEU SER ARG ILE SEQRES 13 A 400 SER ILE ARG MET LEU ILE ASN GLN HIS THR LEU ILE PHE SEQRES 14 A 400 ASP GLY SER THR ASN PRO ALA HIS PRO LYS HIS ILE GLY SEQRES 15 A 400 SER ILE ASP PRO ASN CYS ASN VAL SER GLU VAL VAL LYS SEQRES 16 A 400 ASP ALA TYR ASP MET ALA LYS LEU LEU CYS ASP LYS TYR SEQRES 17 A 400 TYR MET ALA SER PRO ASP LEU GLU ILE GLN GLU ILE ASN SEQRES 18 A 400 ALA ALA ASN SER LYS GLN PRO ILE HIS MET VAL TYR VAL SEQRES 19 A 400 PRO SER HIS LEU TYR HIS MET LEU PHE GLU LEU PHE LYS SEQRES 20 A 400 ASN ALA MET ARG ALA THR VAL GLU SER HIS GLU SER SER SEQRES 21 A 400 LEU ILE LEU PRO PRO ILE LYS VAL MET VAL ALA LEU GLY SEQRES 22 A 400 GLU GLU ASP LEU SER ILE LYS MET SER ASP ARG GLY GLY SEQRES 23 A 400 GLY VAL PRO LEU ARG LYS ILE GLU ARG LEU PHE SER TYR SEQRES 24 A 400 MET TYR SER THR ALA PRO THR PRO GLN PRO GLY THR GLY SEQRES 25 A 400 GLY THR PRO LEU ALA GLY PHE GLY TYR GLY LEU PRO ILE SEQRES 26 A 400 SER ARG LEU TYR ALA LYS TYR PHE GLN GLY ASP LEU GLN SEQRES 27 A 400 LEU PHE SER MET GLU GLY PHE GLY THR ASP ALA VAL ILE SEQRES 28 A 400 TYR LEU LYS ALA LEU SER THR ASP SER VAL GLU ARG LEU SEQRES 29 A 400 PRO VAL TYR ASN LYS SER ALA TRP ARG HIS TYR GLN THR SEQRES 30 A 400 ILE GLN GLU ALA GLY ASP TRP CYS VAL PRO SER THR GLU SEQRES 31 A 400 PRO LYS ASN THR SER THR TYR ARG VAL SER HET PFT A 501 19 HET TLA A 502 10 HETNAM PFT 4-(1,3-DIHYDRO-2H-ISOINDOL-2-YLCARBONYL)BENZENE-1,3- HETNAM 2 PFT DIOL HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 PFT C15 H13 N O3 FORMUL 3 TLA C4 H6 O6 FORMUL 4 HOH *213(H2 O) HELIX 1 1 GLY A 15 LYS A 25 1 11 HELIX 2 2 SER A 32 ASP A 38 1 7 HELIX 3 3 SER A 42 ASN A 69 1 28 HELIX 4 4 PRO A 72 SER A 77 1 6 HELIX 5 5 THR A 78 GLU A 97 1 20 HELIX 6 6 ASP A 105 HIS A 123 1 19 HELIX 7 7 ASP A 125 GLY A 142 1 18 HELIX 8 8 ASP A 144 PHE A 176 1 33 HELIX 9 9 VAL A 197 MET A 217 1 21 HELIX 10 10 VAL A 241 SER A 263 1 23 HELIX 11 11 PRO A 296 SER A 305 5 10 HELIX 12 12 TYR A 328 PHE A 340 1 13 HELIX 13 13 ASN A 375 GLN A 383 1 9 SHEET 1 A 2 ASP A 192 ASN A 196 0 SHEET 2 A 2 HIS A 237 TYR A 240 -1 O TYR A 240 N ASP A 192 SHEET 1 B 5 LEU A 222 ASN A 228 0 SHEET 2 B 5 ILE A 273 LEU A 279 1 O VAL A 275 N GLU A 223 SHEET 3 B 5 ASP A 283 SER A 289 -1 O SER A 289 N LYS A 274 SHEET 4 B 5 GLY A 353 LYS A 361 -1 O ALA A 356 N MET A 288 SHEET 5 B 5 ASP A 343 MET A 349 -1 N GLN A 345 O VAL A 357 SITE 1 AC1 12 LEU A 252 ASN A 255 ARG A 258 ALA A 259 SITE 2 AC1 12 GLU A 262 ASP A 290 GLY A 294 VAL A 295 SITE 3 AC1 12 LEU A 346 THR A 354 HOH A 602 HOH A 617 SITE 1 AC2 5 GLU A 262 SER A 263 HIS A 264 GLU A 265 SITE 2 AC2 5 SER A 266 CRYST1 110.007 110.007 227.744 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004391 0.00000