HEADER LYASE 13-SEP-13 4MPR TITLE BENZOYLFORMATE DECARBOXYLASE: IS THE TETRAMER VITAL FOR ACTIVITY? COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYLFORMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BFD, BFDC; COMPND 5 EC: 4.1.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS THDP-DEPENDENT, CYTOL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.H.ANDREWS,M.J.MCLEISH REVDAT 2 28-FEB-24 4MPR 1 REMARK SEQADV LINK REVDAT 1 27-AUG-14 4MPR 0 JRNL AUTH F.H.ANDREWS,M.P.ROGERS,L.N.PAUL,M.J.MCLEISH JRNL TITL PERTURBATION OF THE MONOMER-MONOMER INTERFACES OF THE JRNL TITL 2 BENZOYLFORMATE DECARBOXYLASE TETRAMER. JRNL REF BIOCHEMISTRY V. 53 4358 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24956165 JRNL DOI 10.1021/BI500081R REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 104731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0137 - 3.3759 1.00 7658 148 0.1474 0.1540 REMARK 3 2 3.3759 - 2.6796 1.00 7441 145 0.1343 0.1281 REMARK 3 3 2.6796 - 2.3409 1.00 7388 143 0.1198 0.1378 REMARK 3 4 2.3409 - 2.1269 1.00 7358 144 0.1087 0.1398 REMARK 3 5 2.1269 - 1.9744 1.00 7346 142 0.1041 0.1430 REMARK 3 6 1.9744 - 1.8580 1.00 7326 143 0.1032 0.1464 REMARK 3 7 1.8580 - 1.7650 1.00 7320 143 0.0999 0.1428 REMARK 3 8 1.7650 - 1.6881 1.00 7316 142 0.1077 0.1420 REMARK 3 9 1.6881 - 1.6232 1.00 7277 142 0.1050 0.1516 REMARK 3 10 1.6232 - 1.5671 1.00 7298 142 0.1088 0.1740 REMARK 3 11 1.5671 - 1.5181 1.00 7282 142 0.1179 0.1724 REMARK 3 12 1.5181 - 1.4747 1.00 7230 140 0.1292 0.1646 REMARK 3 13 1.4747 - 1.4359 1.00 7287 143 0.1511 0.2130 REMARK 3 14 1.4359 - 1.4010 0.99 7207 138 0.1689 0.2312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4228 REMARK 3 ANGLE : 1.563 5795 REMARK 3 CHIRALITY : 0.106 640 REMARK 3 PLANARITY : 0.010 771 REMARK 3 DIHEDRAL : 12.713 1540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104795 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM, 22% V/V PEG400, REMARK 280 0.15 M CALCIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.48800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.98550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.67450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.48800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.98550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.67450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.48800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.98550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.67450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.48800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.98550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.67450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -337.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 161.95200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.97100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 161.95200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 274.69800 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 95.97100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 274.69800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 709 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 837 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1111 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1152 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 527 REMARK 465 LYS A 528 REMARK 465 ARG A 529 REMARK 465 SER A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1171 O HOH A 1174 2.04 REMARK 500 O HOH A 818 O HOH A 964 2.06 REMARK 500 O HOH A 1247 O HOH A 1255 2.07 REMARK 500 O HOH A 1248 O HOH A 1250 2.07 REMARK 500 O HOH A 988 O HOH A 1107 2.09 REMARK 500 O HOH A 878 O HOH A 1095 2.10 REMARK 500 O HOH A 1153 O HOH A 1213 2.10 REMARK 500 O HOH A 810 O HOH A 940 2.13 REMARK 500 O HOH A 1137 O HOH A 1160 2.13 REMARK 500 O HOH A 984 O HOH A 1074 2.13 REMARK 500 O HOH A 1275 O HOH A 1276 2.14 REMARK 500 O HOH A 864 O HOH A 1083 2.15 REMARK 500 O HOH A 1037 O HOH A 1215 2.15 REMARK 500 O HOH A 1163 O HOH A 1230 2.15 REMARK 500 O HOH A 910 O HOH A 987 2.16 REMARK 500 O HOH A 1238 O HOH A 1240 2.16 REMARK 500 O HOH A 1133 O HOH A 1140 2.16 REMARK 500 O HOH A 1065 O HOH A 1105 2.16 REMARK 500 OD1 ASP A 114 O HOH A 1109 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1224 O HOH A 1224 3757 1.91 REMARK 500 O HOH A 982 O HOH A 1260 2765 2.03 REMARK 500 O HOH A 1138 O HOH A 1147 3757 2.04 REMARK 500 O HOH A 1267 O HOH A 1277 4567 2.06 REMARK 500 O HOH A 987 O HOH A 1023 3757 2.10 REMARK 500 O HOH A 1244 O HOH A 1244 3757 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 107 CD GLU A 107 OE2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -147.71 47.98 REMARK 500 ASN A 202 65.24 -152.31 REMARK 500 HIS A 281 -77.37 -138.33 REMARK 500 ASP A 284 69.46 -152.83 REMARK 500 GLU A 375 47.95 -141.53 REMARK 500 PRO A 447 43.41 -85.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 117 O REMARK 620 2 LEU A 118 O 73.8 REMARK 620 3 ARG A 120 O 93.0 92.2 REMARK 620 4 HOH A 759 O 59.3 132.7 85.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 141 OE1 REMARK 620 2 GLU A 141 OE2 51.4 REMARK 620 3 HOH A 857 O 77.4 94.7 REMARK 620 4 HOH A 894 O 107.4 75.2 160.4 REMARK 620 5 HOH A 897 O 161.5 146.7 93.9 86.3 REMARK 620 6 HOH A 925 O 122.3 80.4 77.0 84.6 70.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD1 REMARK 620 2 HOH A 780 O 69.5 REMARK 620 3 HOH A 853 O 76.3 79.6 REMARK 620 4 HOH A 886 O 79.4 83.4 154.0 REMARK 620 5 HOH A 936 O 139.3 134.1 77.3 128.2 REMARK 620 6 HOH A1232 O 131.3 135.4 137.7 67.1 61.2 REMARK 620 7 HOH A1269 O 145.1 76.0 92.6 102.2 66.1 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 428 OD1 REMARK 620 2 ASN A 455 OD1 87.0 REMARK 620 3 THR A 457 O 107.0 83.1 REMARK 620 4 TPP A 602 O2A 89.4 175.5 95.3 REMARK 620 5 TPP A 602 O3B 164.2 100.2 87.9 84.0 REMARK 620 6 HOH A 726 O 80.5 86.0 166.4 96.1 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MPP RELATED DB: PDB REMARK 900 RELATED ID: 4MQS RELATED DB: PDB DBREF 4MPR A 1 528 UNP P20906 MDLC_PSEPU 1 528 SEQADV 4MPR GLU A 141 UNP P20906 ARG 141 ENGINEERED MUTATION SEQADV 4MPR ARG A 529 UNP P20906 EXPRESSION TAG SEQADV 4MPR SER A 530 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 531 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 532 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 533 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 534 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 535 UNP P20906 EXPRESSION TAG SEQADV 4MPR HIS A 536 UNP P20906 EXPRESSION TAG SEQRES 1 A 536 MET ALA SER VAL HIS GLY THR THR TYR GLU LEU LEU ARG SEQRES 2 A 536 ARG GLN GLY ILE ASP THR VAL PHE GLY ASN PRO GLY SER SEQRES 3 A 536 ASN GLU LEU PRO PHE LEU LYS ASP PHE PRO GLU ASP PHE SEQRES 4 A 536 ARG TYR ILE LEU ALA LEU GLN GLU ALA CYS VAL VAL GLY SEQRES 5 A 536 ILE ALA ASP GLY TYR ALA GLN ALA SER ARG LYS PRO ALA SEQRES 6 A 536 PHE ILE ASN LEU HIS SER ALA ALA GLY THR GLY ASN ALA SEQRES 7 A 536 MET GLY ALA LEU SER ASN ALA TRP ASN SER HIS SER PRO SEQRES 8 A 536 LEU ILE VAL THR ALA GLY GLN GLN THR ARG ALA MET ILE SEQRES 9 A 536 GLY VAL GLU ALA LEU LEU THR ASN VAL ASP ALA ALA ASN SEQRES 10 A 536 LEU PRO ARG PRO LEU VAL LYS TRP SER TYR GLU PRO ALA SEQRES 11 A 536 SER ALA ALA GLU VAL PRO HIS ALA MET SER GLU ALA ILE SEQRES 12 A 536 HIS MET ALA SER MET ALA PRO GLN GLY PRO VAL TYR LEU SEQRES 13 A 536 SER VAL PRO TYR ASP ASP TRP ASP LYS ASP ALA ASP PRO SEQRES 14 A 536 GLN SER HIS HIS LEU PHE ASP ARG HIS VAL SER SER SER SEQRES 15 A 536 VAL ARG LEU ASN ASP GLN ASP LEU ASP ILE LEU VAL LYS SEQRES 16 A 536 ALA LEU ASN SER ALA SER ASN PRO ALA ILE VAL LEU GLY SEQRES 17 A 536 PRO ASP VAL ASP ALA ALA ASN ALA ASN ALA ASP CYS VAL SEQRES 18 A 536 MET LEU ALA GLU ARG LEU LYS ALA PRO VAL TRP VAL ALA SEQRES 19 A 536 PRO SER ALA PRO ARG CYS PRO PHE PRO THR ARG HIS PRO SEQRES 20 A 536 CYS PHE ARG GLY LEU MET PRO ALA GLY ILE ALA ALA ILE SEQRES 21 A 536 SER GLN LEU LEU GLU GLY HIS ASP VAL VAL LEU VAL ILE SEQRES 22 A 536 GLY ALA PRO VAL PHE ARG TYR HIS GLN TYR ASP PRO GLY SEQRES 23 A 536 GLN TYR LEU LYS PRO GLY THR ARG LEU ILE SER VAL THR SEQRES 24 A 536 CYS ASP PRO LEU GLU ALA ALA ARG ALA PRO MET GLY ASP SEQRES 25 A 536 ALA ILE VAL ALA ASP ILE GLY ALA MET ALA SER ALA LEU SEQRES 26 A 536 ALA ASN LEU VAL GLU GLU SER SER ARG GLN LEU PRO THR SEQRES 27 A 536 ALA ALA PRO GLU PRO ALA LYS VAL ASP GLN ASP ALA GLY SEQRES 28 A 536 ARG LEU HIS PRO GLU THR VAL PHE ASP THR LEU ASN ASP SEQRES 29 A 536 MET ALA PRO GLU ASN ALA ILE TYR LEU ASN GLU SER THR SEQRES 30 A 536 SER THR THR ALA GLN MET TRP GLN ARG LEU ASN MET ARG SEQRES 31 A 536 ASN PRO GLY SER TYR TYR PHE CYS ALA ALA GLY GLY LEU SEQRES 32 A 536 GLY PHE ALA LEU PRO ALA ALA ILE GLY VAL GLN LEU ALA SEQRES 33 A 536 GLU PRO GLU ARG GLN VAL ILE ALA VAL ILE GLY ASP GLY SEQRES 34 A 536 SER ALA ASN TYR SER ILE SER ALA LEU TRP THR ALA ALA SEQRES 35 A 536 GLN TYR ASN ILE PRO THR ILE PHE VAL ILE MET ASN ASN SEQRES 36 A 536 GLY THR TYR GLY ALA LEU ARG TRP PHE ALA GLY VAL LEU SEQRES 37 A 536 GLU ALA GLU ASN VAL PRO GLY LEU ASP VAL PRO GLY ILE SEQRES 38 A 536 ASP PHE ARG ALA LEU ALA LYS GLY TYR GLY VAL GLN ALA SEQRES 39 A 536 LEU LYS ALA ASP ASN LEU GLU GLN LEU LYS GLY SER LEU SEQRES 40 A 536 GLN GLU ALA LEU SER ALA LYS GLY PRO VAL LEU ILE GLU SEQRES 41 A 536 VAL SER THR VAL SER PRO VAL LYS ARG SER HIS HIS HIS SEQRES 42 A 536 HIS HIS HIS HET CA A 601 1 HET TPP A 602 26 HET CA A 603 1 HET GOL A 604 14 HET GOL A 605 14 HET CA A 606 1 HET GOL A 607 14 HET CL A 608 1 HET NA A 609 1 HETNAM CA CALCIUM ION HETNAM TPP THIAMINE DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 3(CA 2+) FORMUL 3 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 5 GOL 3(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 10 NA NA 1+ FORMUL 11 HOH *585(H2 O) HELIX 1 1 SER A 3 GLN A 15 1 13 HELIX 2 2 GLY A 25 ASN A 27 5 3 HELIX 3 3 GLU A 28 LYS A 33 1 6 HELIX 4 4 GLN A 46 ARG A 62 1 17 HELIX 5 5 SER A 71 ALA A 78 1 8 HELIX 6 6 ALA A 78 SER A 88 1 11 HELIX 7 7 THR A 100 ILE A 104 5 5 HELIX 8 8 ASP A 114 LEU A 118 5 5 HELIX 9 9 SER A 131 ALA A 133 5 3 HELIX 10 10 GLU A 134 MET A 148 1 15 HELIX 11 11 ASP A 161 TRP A 163 5 3 HELIX 12 12 ASP A 168 PHE A 175 5 8 HELIX 13 13 ASN A 186 ALA A 200 1 15 HELIX 14 14 GLY A 208 ALA A 214 1 7 HELIX 15 15 ALA A 216 LYS A 228 1 13 HELIX 16 16 GLY A 256 LEU A 264 1 9 HELIX 17 17 ASP A 301 ALA A 308 1 8 HELIX 18 18 ASP A 317 VAL A 329 1 13 HELIX 19 19 HIS A 354 ALA A 366 1 13 HELIX 20 20 THR A 379 LEU A 387 1 9 HELIX 21 21 PHE A 405 GLU A 417 1 13 HELIX 22 22 GLY A 429 TYR A 433 5 5 HELIX 23 23 SER A 434 ILE A 435 5 2 HELIX 24 24 SER A 436 TYR A 444 1 9 HELIX 25 25 TYR A 458 GLU A 469 1 12 HELIX 26 26 ASP A 482 TYR A 490 1 9 HELIX 27 27 ASN A 499 ALA A 513 1 15 SHEET 1 A 6 ARG A 40 LEU A 43 0 SHEET 2 A 6 THR A 19 GLY A 22 1 N VAL A 20 O ILE A 42 SHEET 3 A 6 ALA A 65 HIS A 70 1 O PHE A 66 N PHE A 21 SHEET 4 A 6 LEU A 92 GLN A 98 1 O ILE A 93 N ILE A 67 SHEET 5 A 6 VAL A 154 PRO A 159 1 O VAL A 154 N VAL A 94 SHEET 6 A 6 SER A 126 TYR A 127 1 N TYR A 127 O SER A 157 SHEET 1 B 6 PHE A 249 LEU A 252 0 SHEET 2 B 6 VAL A 231 VAL A 233 1 N VAL A 231 O ARG A 250 SHEET 3 B 6 ALA A 204 LEU A 207 1 N LEU A 207 O TRP A 232 SHEET 4 B 6 VAL A 269 ILE A 273 1 O LEU A 271 N ALA A 204 SHEET 5 B 6 ARG A 294 THR A 299 1 O VAL A 298 N VAL A 272 SHEET 6 B 6 ASP A 312 VAL A 315 1 O ILE A 314 N THR A 299 SHEET 1 C 6 TYR A 395 PHE A 397 0 SHEET 2 C 6 ILE A 371 GLU A 375 1 N ASN A 374 O TYR A 396 SHEET 3 C 6 VAL A 422 GLY A 427 1 O VAL A 425 N LEU A 373 SHEET 4 C 6 ILE A 449 ASN A 454 1 O VAL A 451 N ALA A 424 SHEET 5 C 6 VAL A 517 SER A 522 1 O VAL A 521 N ILE A 452 SHEET 6 C 6 GLN A 493 ALA A 497 1 N ALA A 497 O GLU A 520 LINK O ASN A 117 CA CA A 606 1555 1555 2.71 LINK O LEU A 118 CA CA A 606 1555 1555 2.57 LINK O ARG A 120 CA CA A 606 1555 1555 2.50 LINK OE1 GLU A 141 NA NA A 609 1555 1555 2.46 LINK OE2 GLU A 141 NA NA A 609 1555 1555 2.64 LINK OD1 ASP A 364 CA CA A 603 1555 1555 2.40 LINK OD1 ASP A 428 CA CA A 601 1555 1555 2.28 LINK OD1 ASN A 455 CA CA A 601 1555 1555 2.32 LINK O THR A 457 CA CA A 601 1555 1555 2.30 LINK CA CA A 601 O2A TPP A 602 1555 1555 2.24 LINK CA CA A 601 O3B TPP A 602 1555 1555 2.30 LINK CA CA A 601 O HOH A 726 1555 1555 2.35 LINK CA CA A 603 O HOH A 780 1555 1555 2.48 LINK CA CA A 603 O HOH A 853 1555 1555 2.49 LINK CA CA A 603 O HOH A 886 1555 1555 2.28 LINK CA CA A 603 O HOH A 936 1555 1555 2.59 LINK CA CA A 603 O HOH A1232 1555 1555 2.53 LINK CA CA A 603 O HOH A1269 1555 1555 2.47 LINK CA CA A 606 O HOH A 759 1555 1555 3.16 LINK NA NA A 609 O HOH A 857 1555 1555 2.32 LINK NA NA A 609 O HOH A 894 1555 1555 2.18 LINK NA NA A 609 O HOH A 897 1555 1555 2.47 LINK NA NA A 609 O HOH A 925 1555 1555 2.41 CISPEP 1 ARG A 120 PRO A 121 0 10.74 CISPEP 2 ALA A 149 PRO A 150 0 -9.45 CISPEP 3 VAL A 277 PHE A 278 0 -19.20 SITE 1 AC1 5 ASP A 428 ASN A 455 THR A 457 TPP A 602 SITE 2 AC1 5 HOH A 726 SITE 1 AC2 25 ASN A 23 PRO A 24 GLY A 25 GLU A 47 SITE 2 AC2 25 HIS A 70 ASN A 77 GLU A 375 THR A 377 SITE 3 AC2 25 SER A 378 GLY A 401 LEU A 403 GLY A 427 SITE 4 AC2 25 ASP A 428 GLY A 429 SER A 430 TYR A 433 SITE 5 AC2 25 ASN A 455 THR A 457 TYR A 458 GLY A 459 SITE 6 AC2 25 ALA A 460 CA A 601 HOH A 746 HOH A 924 SITE 7 AC2 25 HOH A 962 SITE 1 AC3 8 GLU A 37 ASP A 364 HOH A 780 HOH A 853 SITE 2 AC3 8 HOH A 886 HOH A 936 HOH A1232 HOH A1269 SITE 1 AC4 7 ALA A 196 ARG A 294 ILE A 296 ASP A 312 SITE 2 AC4 7 HOH A 802 HOH A1057 HOH A1164 SITE 1 AC5 5 GLU A 417 ARG A 420 HOH A 729 HOH A 945 SITE 2 AC5 5 HOH A1157 SITE 1 AC6 3 ASN A 117 LEU A 118 ARG A 120 SITE 1 AC7 8 LEU A 43 GLN A 443 GLY A 475 LEU A 476 SITE 2 AC7 8 ASP A 477 HOH A1055 HOH A1060 HOH A1092 SITE 1 AC8 2 ARG A 184 ASP A 187 SITE 1 AC9 6 GLY A 105 GLU A 141 HOH A 857 HOH A 894 SITE 2 AC9 6 HOH A 897 HOH A 925 CRYST1 80.976 95.971 137.349 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007281 0.00000