HEADER HYDROLASE/HYDROLASE INHIBITOR 17-SEP-13 4MQY TITLE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI LPXC/LPC-138 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ECOK1_0097, ENVA, LPXC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS LPXC, ANTIBIOTIC, ACYL UDP-GLCNAC, HYDROXAMATE, LPC-138, BAAB KEYWDS 2 SANDWICH, LIPID A BIOSYNTHESIS, LIPID A SYNTHESIS, DEACETYLATION, KEYWDS 3 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-J.LEE,J.NAJEEB,P.ZHOU REVDAT 4 28-FEB-24 4MQY 1 REMARK LINK REVDAT 3 15-NOV-17 4MQY 1 REMARK REVDAT 2 12-FEB-14 4MQY 1 JRNL REVDAT 1 23-OCT-13 4MQY 0 JRNL AUTH C.J.LEE,X.LIANG,R.GOPALASWAMY,J.NAJEEB,E.D.ARK,E.J.TOONE, JRNL AUTH 2 P.ZHOU JRNL TITL STRUCTURAL BASIS OF THE PROMISCUOUS INHIBITOR SUSCEPTIBILITY JRNL TITL 2 OF ESCHERICHIA COLI LPXC. JRNL REF ACS CHEM.BIOL. V. 9 237 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24117400 JRNL DOI 10.1021/CB400067G REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4219 - 4.1675 1.00 2598 136 0.1492 0.1869 REMARK 3 2 4.1675 - 3.3093 0.99 2517 133 0.1505 0.1870 REMARK 3 3 3.3093 - 2.8914 1.00 2510 139 0.1892 0.2189 REMARK 3 4 2.8914 - 2.6272 1.00 2515 140 0.1968 0.2426 REMARK 3 5 2.6272 - 2.4390 1.00 2480 144 0.2077 0.2819 REMARK 3 6 2.4390 - 2.2953 1.00 2503 144 0.2058 0.2538 REMARK 3 7 2.2953 - 2.1804 0.97 2445 130 0.3166 0.3621 REMARK 3 8 2.1804 - 2.0855 1.00 2523 104 0.2396 0.2976 REMARK 3 9 2.0855 - 2.0050 0.99 2479 144 0.2632 0.3239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2514 REMARK 3 ANGLE : 1.253 3415 REMARK 3 CHIRALITY : 0.080 375 REMARK 3 PLANARITY : 0.006 440 REMARK 3 DIHEDRAL : 12.329 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 202.9422 117.5547 3.5161 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.3515 REMARK 3 T33: 0.2716 T12: -0.0626 REMARK 3 T13: -0.0243 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 4.0581 L22: 3.6748 REMARK 3 L33: 4.3803 L12: -0.2830 REMARK 3 L13: -0.0005 L23: -1.6796 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: 0.2473 S13: 0.0188 REMARK 3 S21: -0.1040 S22: 0.0502 S23: 0.0281 REMARK 3 S31: 0.2332 S32: 0.3425 S33: -0.0744 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.5528 119.3853 -3.0968 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.3064 REMARK 3 T33: 0.3194 T12: -0.0698 REMARK 3 T13: -0.0434 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.0747 L22: 2.7852 REMARK 3 L33: 2.6726 L12: 1.0408 REMARK 3 L13: -0.0289 L23: -1.2498 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: 0.4948 S13: 0.3132 REMARK 3 S21: -0.4353 S22: 0.2943 S23: 0.3852 REMARK 3 S31: 0.0706 S32: 0.0647 S33: -0.1273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 180.9202 110.8765 -6.3217 REMARK 3 T TENSOR REMARK 3 T11: 0.3617 T22: 0.5016 REMARK 3 T33: 0.6268 T12: -0.0753 REMARK 3 T13: -0.1676 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.5917 L22: 4.5454 REMARK 3 L33: 2.6819 L12: 0.7701 REMARK 3 L13: -0.6761 L23: -2.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.3110 S12: 0.7989 S13: 0.2467 REMARK 3 S21: -0.8553 S22: 0.3822 S23: 1.2254 REMARK 3 S31: 0.0355 S32: -0.2626 S33: -0.1027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 189.8141 110.6374 -4.2137 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.3409 REMARK 3 T33: 0.2748 T12: -0.0146 REMARK 3 T13: -0.0501 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 2.6866 L22: 4.6149 REMARK 3 L33: 2.5829 L12: 1.8827 REMARK 3 L13: -0.5816 L23: -1.5345 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: 0.5080 S13: 0.1298 REMARK 3 S21: -0.2693 S22: 0.2870 S23: 0.3286 REMARK 3 S31: -0.0902 S32: -0.0209 S33: -0.0863 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 1.5-1.7 M LITHIUM REMARK 280 SULFATE, 16 MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.86767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.73533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.80150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.66917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.93383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 303 REMARK 465 LEU A 304 REMARK 465 ALA A 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 161 O HOH A 530 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -0.38 70.14 REMARK 500 LEU A 62 -104.07 -93.93 REMARK 500 CYS A 63 -137.31 -71.24 REMARK 500 CYS A 63 -155.66 61.19 REMARK 500 ASN A 97 43.42 -92.07 REMARK 500 MET A 104 -135.90 55.34 REMARK 500 SER A 107 -169.26 -116.20 REMARK 500 TYR A 150 131.65 -176.25 REMARK 500 ASN A 162 73.32 -110.33 REMARK 500 SER A 169 1.34 -61.63 REMARK 500 ASP A 219 -150.99 -95.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UKW A 409 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 98.1 REMARK 620 3 ASP A 242 OD1 90.4 96.7 REMARK 620 4 ASP A 242 OD2 145.9 87.4 55.5 REMARK 620 5 2CW A 402 O04 103.7 158.2 83.6 74.7 REMARK 620 6 2CW A 402 O01 112.0 96.2 152.2 100.7 75.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2CW A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UKW A 409 DBREF 4MQY A 1 305 UNP D5CV28 D5CV28_ECOKI 1 305 SEQRES 1 A 305 MET ILE LYS GLN ARG THR LEU LYS ARG ILE VAL GLN ALA SEQRES 2 A 305 THR GLY VAL GLY LEU HIS THR GLY LYS LYS VAL THR LEU SEQRES 3 A 305 THR LEU ARG PRO ALA PRO ALA ASN THR GLY VAL ILE TYR SEQRES 4 A 305 ARG ARG THR ASP LEU ASN PRO PRO VAL ASP PHE PRO ALA SEQRES 5 A 305 ASP ALA LYS SER VAL ARG ASP THR MET LEU CYS THR CYS SEQRES 6 A 305 LEU VAL ASN GLU HIS ASP VAL ARG ILE SER THR VAL GLU SEQRES 7 A 305 HIS LEU ASN ALA ALA LEU ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 305 ILE VAL ILE GLU VAL ASN ALA PRO GLU ILE PRO ILE MET SEQRES 9 A 305 ASP GLY SER ALA ALA PRO PHE VAL TYR LEU LEU LEU ASP SEQRES 10 A 305 ALA GLY ILE ASP GLU LEU ASN CYS ALA LYS LYS PHE VAL SEQRES 11 A 305 ARG ILE LYS GLU THR VAL ARG VAL GLU ASP GLY ASP LYS SEQRES 12 A 305 TRP ALA GLU PHE LYS PRO TYR ASN GLY PHE SER LEU ASP SEQRES 13 A 305 PHE THR ILE ASP PHE ASN HIS PRO ALA ILE ASP SER SER SEQRES 14 A 305 ASN GLN ARG TYR ALA MET ASN PHE SER ALA ASP ALA PHE SEQRES 15 A 305 MET ARG GLN ILE SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 305 ARG ASP ILE GLU TYR LEU GLN SER ARG GLY LEU CYS LEU SEQRES 17 A 305 GLY GLY SER PHE ASP CYS ALA ILE VAL VAL ASP ASP TYR SEQRES 18 A 305 ARG VAL LEU ASN GLU ASP GLY LEU ARG PHE GLU ASP GLU SEQRES 19 A 305 PHE VAL ARG HIS LYS MET LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 305 PHE MET CYS GLY HIS ASN ILE ILE GLY ALA PHE THR ALA SEQRES 21 A 305 TYR LYS SER GLY HIS ALA LEU ASN ASN LYS LEU LEU GLN SEQRES 22 A 305 ALA VAL LEU ALA LYS GLN GLU ALA TRP GLU TYR VAL THR SEQRES 23 A 305 PHE GLN ASP ASP ALA GLU LEU PRO LEU ALA PHE LYS ALA SEQRES 24 A 305 PRO SER ALA VAL LEU ALA HET ZN A 401 1 HET 2CW A 402 29 HET DMS A 403 4 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET UKW A 409 18 HETNAM ZN ZINC ION HETNAM 2CW 4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3- HETNAM 2 2CW HYDROXY-2-METHYL-1-NITROSO-1-OXOBUTAN-2-YL]BENZAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM UKW 4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL) HETNAM 2 UKW PROPYL]BENZAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 2CW C22 H19 N3 O4 FORMUL 4 DMS C2 H6 O S FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 UKW C13 H12 N2 O4 FORMUL 11 HOH *166(H2 O) HELIX 1 1 ASP A 53 LYS A 55 5 3 HELIX 2 2 VAL A 77 GLY A 88 1 12 HELIX 3 3 ALA A 108 GLY A 119 1 12 HELIX 4 4 ASP A 167 ASN A 170 5 4 HELIX 5 5 SER A 178 ILE A 186 1 9 HELIX 6 6 MET A 195 SER A 203 1 9 HELIX 7 7 ASP A 233 PHE A 248 1 16 HELIX 8 8 MET A 249 GLY A 251 5 3 HELIX 9 9 GLY A 264 LYS A 278 1 15 HELIX 10 10 ASP A 289 LEU A 293 5 5 HELIX 11 11 PRO A 294 LYS A 298 5 5 SHEET 1 A 2 LYS A 3 LEU A 7 0 SHEET 2 A 2 ILE A 120 ALA A 126 -1 O ASP A 121 N THR A 6 SHEET 1 B 5 VAL A 11 VAL A 16 0 SHEET 2 B 5 LYS A 23 ARG A 29 -1 O VAL A 24 N GLY A 15 SHEET 3 B 5 ILE A 92 VAL A 96 -1 O GLU A 95 N THR A 27 SHEET 4 B 5 VAL A 37 ARG A 41 1 N ILE A 38 O ILE A 94 SHEET 5 B 5 VAL A 48 PRO A 51 -1 O PHE A 50 N TYR A 39 SHEET 1 C 3 VAL A 57 ARG A 58 0 SHEET 2 C 3 CYS A 65 VAL A 67 -1 O CYS A 65 N ARG A 58 SHEET 3 C 3 ARG A 73 SER A 75 -1 O ILE A 74 N LEU A 66 SHEET 1 D 5 VAL A 136 ASP A 140 0 SHEET 2 D 5 LYS A 143 LYS A 148 -1 O LYS A 143 N ASP A 140 SHEET 3 D 5 ILE A 254 TYR A 261 -1 O ALA A 257 N LYS A 148 SHEET 4 D 5 PHE A 153 THR A 158 1 N SER A 154 O PHE A 258 SHEET 5 D 5 ARG A 172 ASN A 176 -1 O TYR A 173 N PHE A 157 SHEET 1 E 5 VAL A 136 ASP A 140 0 SHEET 2 E 5 LYS A 143 LYS A 148 -1 O LYS A 143 N ASP A 140 SHEET 3 E 5 ILE A 254 TYR A 261 -1 O ALA A 257 N LYS A 148 SHEET 4 E 5 PHE A 129 ILE A 132 1 N VAL A 130 O ILE A 255 SHEET 5 E 5 TRP A 282 VAL A 285 -1 O GLU A 283 N ARG A 131 SHEET 1 F 2 PHE A 192 PHE A 194 0 SHEET 2 F 2 ILE A 216 VAL A 218 1 O ILE A 216 N GLY A 193 LINK NE2 HIS A 79 ZN ZN A 401 1555 1555 1.98 LINK NE2 HIS A 238 ZN ZN A 401 1555 1555 2.04 LINK OD1 ASP A 242 ZN ZN A 401 1555 1555 2.14 LINK OD2 ASP A 242 ZN ZN A 401 1555 1555 2.42 LINK ZN ZN A 401 O04 2CW A 402 1555 1555 1.98 LINK ZN ZN A 401 O01 2CW A 402 1555 1555 2.41 CISPEP 1 ASN A 45 PRO A 46 0 3.67 SITE 1 AC1 4 HIS A 79 HIS A 238 ASP A 242 2CW A 402 SITE 1 AC2 20 LEU A 18 LEU A 62 CYS A 63 GLU A 78 SITE 2 AC2 20 HIS A 79 THR A 191 PHE A 192 ILE A 198 SITE 3 AC2 20 GLN A 202 GLY A 210 SER A 211 PHE A 212 SITE 4 AC2 20 ALA A 215 HIS A 238 ASP A 242 HIS A 265 SITE 5 AC2 20 ZN A 401 SO4 A 404 HOH A 511 HOH A 666 SITE 1 AC3 1 HOH A 649 SITE 1 AC4 9 ASP A 59 LYS A 239 GLY A 264 HIS A 265 SITE 2 AC4 9 2CW A 402 HOH A 511 HOH A 553 HOH A 638 SITE 3 AC4 9 HOH A 666 SITE 1 AC5 4 GLU A 122 LEU A 123 ASN A 124 HOH A 587 SITE 1 AC6 2 LYS A 22 LYS A 23 SITE 1 AC7 3 LYS A 8 ARG A 9 ARG A 204 SITE 1 AC8 2 CYS A 250 TYR A 284 SITE 1 AC9 11 MET A 61 TYR A 113 MET A 183 SER A 187 SITE 2 AC9 11 ARG A 188 PHE A 194 ASP A 197 LEU A 201 SITE 3 AC9 11 ALA A 302 HOH A 575 HOH A 606 CRYST1 107.515 107.515 53.603 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009301 0.005370 0.000000 0.00000 SCALE2 0.000000 0.010740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018656 0.00000