data_4MR6 # _entry.id 4MR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MR6 pdb_00004mr6 10.2210/pdb4mr6/pdb RCSB RCSB082263 ? ? WWPDB D_1000082263 ? ? # _pdbx_database_status.entry_id 4MR6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Felletar, I.' 3 'Martin, S.' 4 'Fedorov, O.' 5 'von Delft, F.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Weigelt, J.' 9 'Bountra, C.' 10 'Knapp, S.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 19754 _citation.page_last 19759 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24248379 _citation.pdbx_database_id_DOI 10.1073/pnas.1310658110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Picaud, S.' 1 ? primary 'Wells, C.' 2 ? primary 'Felletar, I.' 3 ? primary 'Brotherton, D.' 4 ? primary 'Martin, S.' 5 ? primary 'Savitsky, P.' 6 ? primary 'Diez-Dacal, B.' 7 ? primary 'Philpott, M.' 8 ? primary 'Bountra, C.' 9 ? primary 'Lingard, H.' 10 ? primary 'Fedorov, O.' 11 ? primary 'Muller, S.' 12 ? primary 'Brennan, P.E.' 13 ? primary 'Knapp, S.' 14 ? primary 'Filippakopoulos, P.' 15 ? # _cell.length_a 32.118 _cell.length_b 52.692 _cell.length_c 72.119 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4MR6 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.entry_id 4MR6 _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13375.410 1 ? ? 'unp residues 344-455' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 4 non-polymer syn '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 370.399 1 ? ? ? ? 5 water nat water 18.015 179 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1, Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 LEU n 1 10 LYS n 1 11 HIS n 1 12 CYS n 1 13 ASN n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 ALA n 1 40 LEU n 1 41 GLY n 1 42 LEU n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 GLU n 1 64 ASN n 1 65 ARG n 1 66 ASP n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLU n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 PHE n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFS NCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 344 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MR6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 344 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 344 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MR6 SER A 1 ? UNP P25440 ? ? 'expression tag' 342 1 1 4MR6 MET A 2 ? UNP P25440 ? ? 'expression tag' 343 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1K0 non-polymer . '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' ? 'C20 H22 N2 O5' 370.399 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4MR6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.2M KSCN, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2012-06-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.52 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.52 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4MR6 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.67 _reflns.d_resolution_low 19.60 _reflns.number_all 14814 _reflns.number_obs 13910 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs 0.119 _reflns.pdbx_Rsym_value 0.119 _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.B_iso_Wilson_estimate 12.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.67 1.76 ? 93.9 0.703 2.0 0.703 4.6 1721 ? ? ? ? 1 1 1.76 1.86 ? 96.0 0.531 3.1 0.531 4.9 1860 ? ? ? ? 2 1 1.86 1.99 ? 96.5 0.347 4.8 0.347 4.9 1792 ? ? ? ? 3 1 1.99 2.15 ? 97.0 0.206 8.0 0.206 4.9 1679 ? ? ? ? 4 1 2.15 2.36 ? 97.5 0.147 11.0 0.147 4.9 1568 ? ? ? ? 5 1 2.36 2.63 ? 97.9 0.118 13.1 0.118 4.8 1450 ? ? ? ? 6 1 2.63 3.04 ? 98.3 0.082 17.6 0.082 4.8 1293 ? ? ? ? 7 1 3.04 3.72 ? 98.5 0.047 26.7 0.047 4.8 1119 ? ? ? ? 8 1 3.72 5.27 ? 98.5 0.038 31.5 0.038 4.6 907 ? ? ? ? 9 1 5.27 19.60 ? 97.6 0.038 29.1 0.038 4.2 521 ? ? ? ? 10 1 # _refine.entry_id 4MR6 _refine.ls_d_res_high 1.6700 _refine.ls_d_res_low 19.6000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.6600 _refine.ls_number_reflns_obs 13867 _refine.ls_number_reflns_all 14815 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1568 _refine.ls_R_factor_R_work 0.1549 _refine.ls_wR_factor_R_work 0.1325 _refine.ls_R_factor_R_free 0.1932 _refine.ls_wR_factor_R_free 0.1715 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 700 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.7968 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5800 _refine.aniso_B[2][2] -0.3800 _refine.aniso_B[3][3] -0.2000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI 0.0992 _refine.overall_SU_R_free 0.0996 _refine.pdbx_overall_ESU_R 0.0990 _refine.pdbx_overall_ESU_R_Free 0.1000 _refine.overall_SU_ML 0.0600 _refine.overall_SU_B 3.3280 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3ONI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8990 _refine.B_iso_max 122.060 _refine.B_iso_min 6.050 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 907 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 1129 _refine_hist.d_res_high 1.6700 _refine_hist.d_res_low 19.6000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1008 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 705 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1358 1.588 1.989 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1705 1.016 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 117 5.650 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 50 36.811 23.400 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 174 12.304 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 26.100 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 132 0.102 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1217 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 214 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6700 _refine_ls_shell.d_res_low 1.7130 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 74.6500 _refine_ls_shell.number_reflns_R_work 723 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.R_factor_R_free 0.2830 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 754 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MR6 _struct.title 'Crystal Structure of the second bromodomain of human BRD2 in complex with a quinazolinone ligand (RVX-208)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MR6 _struct_keywords.pdbx_keywords 'TRANSCRIPTION/TRANSCRIPTION inhibitor' _struct_keywords.text ;BRD2, RING3, Small molecule inhibitor, RVX-208, inhibitor complex, Structural Genomics Consortium, SGC, TRANSCRIPTION-TRANSCRIPTION inhibitor complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 5 ? LEU A 20 ? LEU A 346 LEU A 361 1 ? 16 HELX_P HELX_P2 2 SER A 21 ? LYS A 23 ? SER A 362 LYS A 364 5 ? 3 HELX_P HELX_P3 3 HIS A 24 ? TRP A 29 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P4 4 PRO A 30 ? TYR A 32 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P5 5 ASP A 36 ? GLY A 41 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P6 6 ASP A 44 ? ILE A 49 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P7 7 ASP A 54 ? ASN A 64 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P8 8 ASP A 69 ? ASN A 88 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P9 9 HIS A 92 ? ALA A 110 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 501 ? 7 'BINDING SITE FOR RESIDUE EDO A 501' AC2 Software A EDO 502 ? 7 'BINDING SITE FOR RESIDUE EDO A 502' AC3 Software A EDO 503 ? 6 'BINDING SITE FOR RESIDUE EDO A 503' AC4 Software A DMS 504 ? 5 'BINDING SITE FOR RESIDUE DMS A 504' AC5 Software A 1K0 505 ? 11 'BINDING SITE FOR RESIDUE 1K0 A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TYR A 27 ? TYR A 368 . ? 1_555 ? 2 AC1 7 LYS A 61 ? LYS A 402 . ? 1_455 ? 3 AC1 7 ASP A 66 ? ASP A 407 . ? 1_455 ? 4 AC1 7 GLU A 72 ? GLU A 413 . ? 1_455 ? 5 AC1 7 MET A 97 ? MET A 438 . ? 1_555 ? 6 AC1 7 LYS A 100 ? LYS A 441 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 616 . ? 1_555 ? 8 AC2 7 TYR A 85 ? TYR A 426 . ? 2_566 ? 9 AC2 7 ARG A 99 ? ARG A 440 . ? 2_566 ? 10 AC2 7 GLN A 102 ? GLN A 443 . ? 1_555 ? 11 AC2 7 ASP A 103 ? ASP A 444 . ? 1_555 ? 12 AC2 7 GLU A 106 ? GLU A 447 . ? 1_555 ? 13 AC2 7 PHE A 107 ? PHE A 448 . ? 1_555 ? 14 AC2 7 HOH G . ? HOH A 724 . ? 1_555 ? 15 AC3 6 LYS A 10 ? LYS A 351 . ? 1_555 ? 16 AC3 6 ASP A 44 ? ASP A 385 . ? 4_564 ? 17 AC3 6 TYR A 87 ? TYR A 428 . ? 4_564 ? 18 AC3 6 PRO A 89 ? PRO A 430 . ? 4_564 ? 19 AC3 6 HOH G . ? HOH A 754 . ? 1_555 ? 20 AC3 6 HOH G . ? HOH A 772 . ? 4_564 ? 21 AC4 5 TRP A 29 ? TRP A 370 . ? 1_555 ? 22 AC4 5 HIS A 92 ? HIS A 433 . ? 1_555 ? 23 AC4 5 MET A 97 ? MET A 438 . ? 1_555 ? 24 AC4 5 HOH G . ? HOH A 660 . ? 1_555 ? 25 AC4 5 HOH G . ? HOH A 723 . ? 1_555 ? 26 AC5 11 LYS A 10 ? LYS A 351 . ? 4_565 ? 27 AC5 11 TRP A 29 ? TRP A 370 . ? 1_555 ? 28 AC5 11 PRO A 30 ? PRO A 371 . ? 1_555 ? 29 AC5 11 PHE A 31 ? PHE A 372 . ? 1_555 ? 30 AC5 11 VAL A 35 ? VAL A 376 . ? 1_555 ? 31 AC5 11 LEU A 40 ? LEU A 381 . ? 1_555 ? 32 AC5 11 LEU A 42 ? LEU A 383 . ? 1_555 ? 33 AC5 11 ASN A 88 ? ASN A 429 . ? 1_555 ? 34 AC5 11 HIS A 92 ? HIS A 433 . ? 1_555 ? 35 AC5 11 HOH G . ? HOH A 606 . ? 1_555 ? 36 AC5 11 HOH G . ? HOH A 660 . ? 1_555 ? # _atom_sites.entry_id 4MR6 _atom_sites.fract_transf_matrix[1][1] 0.031135 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018978 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013866 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 342 ? ? ? A . n A 1 2 MET 2 343 ? ? ? A . n A 1 3 GLY 3 344 ? ? ? A . n A 1 4 LYS 4 345 ? ? ? A . n A 1 5 LEU 5 346 346 LEU LEU A . n A 1 6 SER 6 347 347 SER SER A . n A 1 7 GLU 7 348 348 GLU GLU A . n A 1 8 GLN 8 349 349 GLN GLN A . n A 1 9 LEU 9 350 350 LEU LEU A . n A 1 10 LYS 10 351 351 LYS LYS A . n A 1 11 HIS 11 352 352 HIS HIS A . n A 1 12 CYS 12 353 353 CYS CYS A . n A 1 13 ASN 13 354 354 ASN ASN A . n A 1 14 GLY 14 355 355 GLY GLY A . n A 1 15 ILE 15 356 356 ILE ILE A . n A 1 16 LEU 16 357 357 LEU LEU A . n A 1 17 LYS 17 358 358 LYS LYS A . n A 1 18 GLU 18 359 359 GLU GLU A . n A 1 19 LEU 19 360 360 LEU LEU A . n A 1 20 LEU 20 361 361 LEU LEU A . n A 1 21 SER 21 362 362 SER SER A . n A 1 22 LYS 22 363 363 LYS LYS A . n A 1 23 LYS 23 364 364 LYS LYS A . n A 1 24 HIS 24 365 365 HIS HIS A . n A 1 25 ALA 25 366 366 ALA ALA A . n A 1 26 ALA 26 367 367 ALA ALA A . n A 1 27 TYR 27 368 368 TYR TYR A . n A 1 28 ALA 28 369 369 ALA ALA A . n A 1 29 TRP 29 370 370 TRP TRP A . n A 1 30 PRO 30 371 371 PRO PRO A . n A 1 31 PHE 31 372 372 PHE PHE A . n A 1 32 TYR 32 373 373 TYR TYR A . n A 1 33 LYS 33 374 374 LYS LYS A . n A 1 34 PRO 34 375 375 PRO PRO A . n A 1 35 VAL 35 376 376 VAL VAL A . n A 1 36 ASP 36 377 377 ASP ASP A . n A 1 37 ALA 37 378 378 ALA ALA A . n A 1 38 SER 38 379 379 SER SER A . n A 1 39 ALA 39 380 380 ALA ALA A . n A 1 40 LEU 40 381 381 LEU LEU A . n A 1 41 GLY 41 382 382 GLY GLY A . n A 1 42 LEU 42 383 383 LEU LEU A . n A 1 43 HIS 43 384 384 HIS HIS A . n A 1 44 ASP 44 385 385 ASP ASP A . n A 1 45 TYR 45 386 386 TYR TYR A . n A 1 46 HIS 46 387 387 HIS HIS A . n A 1 47 ASP 47 388 388 ASP ASP A . n A 1 48 ILE 48 389 389 ILE ILE A . n A 1 49 ILE 49 390 390 ILE ILE A . n A 1 50 LYS 50 391 391 LYS LYS A . n A 1 51 HIS 51 392 392 HIS HIS A . n A 1 52 PRO 52 393 393 PRO PRO A . n A 1 53 MET 53 394 394 MET MET A . n A 1 54 ASP 54 395 395 ASP ASP A . n A 1 55 LEU 55 396 396 LEU LEU A . n A 1 56 SER 56 397 397 SER SER A . n A 1 57 THR 57 398 398 THR THR A . n A 1 58 VAL 58 399 399 VAL VAL A . n A 1 59 LYS 59 400 400 LYS LYS A . n A 1 60 ARG 60 401 401 ARG ARG A . n A 1 61 LYS 61 402 402 LYS LYS A . n A 1 62 MET 62 403 403 MET MET A . n A 1 63 GLU 63 404 404 GLU GLU A . n A 1 64 ASN 64 405 405 ASN ASN A . n A 1 65 ARG 65 406 406 ARG ARG A . n A 1 66 ASP 66 407 407 ASP ASP A . n A 1 67 TYR 67 408 408 TYR TYR A . n A 1 68 ARG 68 409 409 ARG ARG A . n A 1 69 ASP 69 410 410 ASP ASP A . n A 1 70 ALA 70 411 411 ALA ALA A . n A 1 71 GLN 71 412 412 GLN GLN A . n A 1 72 GLU 72 413 413 GLU GLU A . n A 1 73 PHE 73 414 414 PHE PHE A . n A 1 74 ALA 74 415 415 ALA ALA A . n A 1 75 ALA 75 416 416 ALA ALA A . n A 1 76 ASP 76 417 417 ASP ASP A . n A 1 77 VAL 77 418 418 VAL VAL A . n A 1 78 ARG 78 419 419 ARG ARG A . n A 1 79 LEU 79 420 420 LEU LEU A . n A 1 80 MET 80 421 421 MET MET A . n A 1 81 PHE 81 422 422 PHE PHE A . n A 1 82 SER 82 423 423 SER SER A . n A 1 83 ASN 83 424 424 ASN ASN A . n A 1 84 CYS 84 425 425 CYS CYS A . n A 1 85 TYR 85 426 426 TYR TYR A . n A 1 86 LYS 86 427 427 LYS LYS A . n A 1 87 TYR 87 428 428 TYR TYR A . n A 1 88 ASN 88 429 429 ASN ASN A . n A 1 89 PRO 89 430 430 PRO PRO A . n A 1 90 PRO 90 431 431 PRO PRO A . n A 1 91 ASP 91 432 432 ASP ASP A . n A 1 92 HIS 92 433 433 HIS HIS A . n A 1 93 ASP 93 434 434 ASP ASP A . n A 1 94 VAL 94 435 435 VAL VAL A . n A 1 95 VAL 95 436 436 VAL VAL A . n A 1 96 ALA 96 437 437 ALA ALA A . n A 1 97 MET 97 438 438 MET MET A . n A 1 98 ALA 98 439 439 ALA ALA A . n A 1 99 ARG 99 440 440 ARG ARG A . n A 1 100 LYS 100 441 441 LYS LYS A . n A 1 101 LEU 101 442 442 LEU LEU A . n A 1 102 GLN 102 443 443 GLN GLN A . n A 1 103 ASP 103 444 444 ASP ASP A . n A 1 104 VAL 104 445 445 VAL VAL A . n A 1 105 PHE 105 446 446 PHE PHE A . n A 1 106 GLU 106 447 447 GLU GLU A . n A 1 107 PHE 107 448 448 PHE PHE A . n A 1 108 ARG 108 449 449 ARG ARG A . n A 1 109 TYR 109 450 450 TYR TYR A . n A 1 110 ALA 110 451 451 ALA ALA A . n A 1 111 LYS 111 452 452 LYS LYS A . n A 1 112 MET 112 453 453 MET MET A . n A 1 113 PRO 113 454 454 PRO PRO A . n A 1 114 ASP 114 455 455 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 501 1 EDO EDO A . C 2 EDO 1 502 2 EDO EDO A . D 2 EDO 1 503 3 EDO EDO A . E 3 DMS 1 504 1 DMS DMS A . F 4 1K0 1 505 1 1K0 DRG A . G 5 HOH 1 601 1 HOH HOH A . G 5 HOH 2 602 3 HOH HOH A . G 5 HOH 3 603 4 HOH HOH A . G 5 HOH 4 604 6 HOH HOH A . G 5 HOH 5 605 7 HOH HOH A . G 5 HOH 6 606 9 HOH HOH A . G 5 HOH 7 607 10 HOH HOH A . G 5 HOH 8 608 11 HOH HOH A . G 5 HOH 9 609 12 HOH HOH A . G 5 HOH 10 610 13 HOH HOH A . G 5 HOH 11 611 16 HOH HOH A . G 5 HOH 12 612 17 HOH HOH A . G 5 HOH 13 613 18 HOH HOH A . G 5 HOH 14 614 21 HOH HOH A . G 5 HOH 15 615 22 HOH HOH A . G 5 HOH 16 616 23 HOH HOH A . G 5 HOH 17 617 24 HOH HOH A . G 5 HOH 18 618 25 HOH HOH A . G 5 HOH 19 619 26 HOH HOH A . G 5 HOH 20 620 27 HOH HOH A . G 5 HOH 21 621 28 HOH HOH A . G 5 HOH 22 622 29 HOH HOH A . G 5 HOH 23 623 30 HOH HOH A . G 5 HOH 24 624 31 HOH HOH A . G 5 HOH 25 625 32 HOH HOH A . G 5 HOH 26 626 35 HOH HOH A . G 5 HOH 27 627 38 HOH HOH A . G 5 HOH 28 628 39 HOH HOH A . G 5 HOH 29 629 40 HOH HOH A . G 5 HOH 30 630 44 HOH HOH A . G 5 HOH 31 631 46 HOH HOH A . G 5 HOH 32 632 48 HOH HOH A . G 5 HOH 33 633 50 HOH HOH A . G 5 HOH 34 634 51 HOH HOH A . G 5 HOH 35 635 52 HOH HOH A . G 5 HOH 36 636 53 HOH HOH A . G 5 HOH 37 637 54 HOH HOH A . G 5 HOH 38 638 56 HOH HOH A . G 5 HOH 39 639 58 HOH HOH A . G 5 HOH 40 640 59 HOH HOH A . G 5 HOH 41 641 60 HOH HOH A . G 5 HOH 42 642 61 HOH HOH A . G 5 HOH 43 643 62 HOH HOH A . G 5 HOH 44 644 63 HOH HOH A . G 5 HOH 45 645 65 HOH HOH A . G 5 HOH 46 646 66 HOH HOH A . G 5 HOH 47 647 68 HOH HOH A . G 5 HOH 48 648 69 HOH HOH A . G 5 HOH 49 649 73 HOH HOH A . G 5 HOH 50 650 74 HOH HOH A . G 5 HOH 51 651 75 HOH HOH A . G 5 HOH 52 652 76 HOH HOH A . G 5 HOH 53 653 78 HOH HOH A . G 5 HOH 54 654 80 HOH HOH A . G 5 HOH 55 655 81 HOH HOH A . G 5 HOH 56 656 82 HOH HOH A . G 5 HOH 57 657 83 HOH HOH A . G 5 HOH 58 658 84 HOH HOH A . G 5 HOH 59 659 85 HOH HOH A . G 5 HOH 60 660 86 HOH HOH A . G 5 HOH 61 661 88 HOH HOH A . G 5 HOH 62 662 89 HOH HOH A . G 5 HOH 63 663 91 HOH HOH A . G 5 HOH 64 664 92 HOH HOH A . G 5 HOH 65 665 93 HOH HOH A . G 5 HOH 66 666 95 HOH HOH A . G 5 HOH 67 667 96 HOH HOH A . G 5 HOH 68 668 97 HOH HOH A . G 5 HOH 69 669 98 HOH HOH A . G 5 HOH 70 670 99 HOH HOH A . G 5 HOH 71 671 103 HOH HOH A . G 5 HOH 72 672 104 HOH HOH A . G 5 HOH 73 673 106 HOH HOH A . G 5 HOH 74 674 107 HOH HOH A . G 5 HOH 75 675 108 HOH HOH A . G 5 HOH 76 676 111 HOH HOH A . G 5 HOH 77 677 113 HOH HOH A . G 5 HOH 78 678 114 HOH HOH A . G 5 HOH 79 679 116 HOH HOH A . G 5 HOH 80 680 120 HOH HOH A . G 5 HOH 81 681 122 HOH HOH A . G 5 HOH 82 682 123 HOH HOH A . G 5 HOH 83 683 124 HOH HOH A . G 5 HOH 84 684 125 HOH HOH A . G 5 HOH 85 685 126 HOH HOH A . G 5 HOH 86 686 127 HOH HOH A . G 5 HOH 87 687 128 HOH HOH A . G 5 HOH 88 688 129 HOH HOH A . G 5 HOH 89 689 130 HOH HOH A . G 5 HOH 90 690 131 HOH HOH A . G 5 HOH 91 691 132 HOH HOH A . G 5 HOH 92 692 133 HOH HOH A . G 5 HOH 93 693 134 HOH HOH A . G 5 HOH 94 694 135 HOH HOH A . G 5 HOH 95 695 136 HOH HOH A . G 5 HOH 96 696 137 HOH HOH A . G 5 HOH 97 697 138 HOH HOH A . G 5 HOH 98 698 139 HOH HOH A . G 5 HOH 99 699 140 HOH HOH A . G 5 HOH 100 700 141 HOH HOH A . G 5 HOH 101 701 142 HOH HOH A . G 5 HOH 102 702 143 HOH HOH A . G 5 HOH 103 703 144 HOH HOH A . G 5 HOH 104 704 145 HOH HOH A . G 5 HOH 105 705 146 HOH HOH A . G 5 HOH 106 706 147 HOH HOH A . G 5 HOH 107 707 148 HOH HOH A . G 5 HOH 108 708 149 HOH HOH A . G 5 HOH 109 709 150 HOH HOH A . G 5 HOH 110 710 151 HOH HOH A . G 5 HOH 111 711 152 HOH HOH A . G 5 HOH 112 712 153 HOH HOH A . G 5 HOH 113 713 155 HOH HOH A . G 5 HOH 114 714 156 HOH HOH A . G 5 HOH 115 715 157 HOH HOH A . G 5 HOH 116 716 158 HOH HOH A . G 5 HOH 117 717 159 HOH HOH A . G 5 HOH 118 718 160 HOH HOH A . G 5 HOH 119 719 161 HOH HOH A . G 5 HOH 120 720 162 HOH HOH A . G 5 HOH 121 721 163 HOH HOH A . G 5 HOH 122 722 164 HOH HOH A . G 5 HOH 123 723 165 HOH HOH A . G 5 HOH 124 724 166 HOH HOH A . G 5 HOH 125 725 167 HOH HOH A . G 5 HOH 126 726 168 HOH HOH A . G 5 HOH 127 727 169 HOH HOH A . G 5 HOH 128 728 170 HOH HOH A . G 5 HOH 129 729 171 HOH HOH A . G 5 HOH 130 730 172 HOH HOH A . G 5 HOH 131 731 173 HOH HOH A . G 5 HOH 132 732 174 HOH HOH A . G 5 HOH 133 733 175 HOH HOH A . G 5 HOH 134 734 176 HOH HOH A . G 5 HOH 135 735 177 HOH HOH A . G 5 HOH 136 736 178 HOH HOH A . G 5 HOH 137 737 179 HOH HOH A . G 5 HOH 138 738 180 HOH HOH A . G 5 HOH 139 739 181 HOH HOH A . G 5 HOH 140 740 182 HOH HOH A . G 5 HOH 141 741 183 HOH HOH A . G 5 HOH 142 742 184 HOH HOH A . G 5 HOH 143 743 185 HOH HOH A . G 5 HOH 144 744 186 HOH HOH A . G 5 HOH 145 745 187 HOH HOH A . G 5 HOH 146 746 188 HOH HOH A . G 5 HOH 147 747 189 HOH HOH A . G 5 HOH 148 748 190 HOH HOH A . G 5 HOH 149 749 191 HOH HOH A . G 5 HOH 150 750 193 HOH HOH A . G 5 HOH 151 751 194 HOH HOH A . G 5 HOH 152 752 195 HOH HOH A . G 5 HOH 153 753 196 HOH HOH A . G 5 HOH 154 754 197 HOH HOH A . G 5 HOH 155 755 198 HOH HOH A . G 5 HOH 156 756 200 HOH HOH A . G 5 HOH 157 757 201 HOH HOH A . G 5 HOH 158 758 202 HOH HOH A . G 5 HOH 159 759 203 HOH HOH A . G 5 HOH 160 760 204 HOH HOH A . G 5 HOH 161 761 205 HOH HOH A . G 5 HOH 162 762 206 HOH HOH A . G 5 HOH 163 763 207 HOH HOH A . G 5 HOH 164 764 208 HOH HOH A . G 5 HOH 165 765 209 HOH HOH A . G 5 HOH 166 766 210 HOH HOH A . G 5 HOH 167 767 211 HOH HOH A . G 5 HOH 168 768 212 HOH HOH A . G 5 HOH 169 769 213 HOH HOH A . G 5 HOH 170 770 214 HOH HOH A . G 5 HOH 171 771 215 HOH HOH A . G 5 HOH 172 772 216 HOH HOH A . G 5 HOH 173 773 217 HOH HOH A . G 5 HOH 174 774 218 HOH HOH A . G 5 HOH 175 775 219 HOH HOH A . G 5 HOH 176 776 220 HOH HOH A . G 5 HOH 177 777 221 HOH HOH A . G 5 HOH 178 778 222 HOH HOH A . G 5 HOH 179 779 223 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-27 2 'Structure model' 1 1 2014-01-22 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.666 _diffrn_reflns.pdbx_d_res_low 19.603 _diffrn_reflns.pdbx_number_obs 13910 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.119 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 6.40 _diffrn_reflns.pdbx_redundancy 4.80 _diffrn_reflns.pdbx_percent_possible_obs 93.90 _diffrn_reflns.number 66405 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.27 19.60 ? ? 0.038 0.038 ? 4.20 97.60 1 3.72 5.27 ? ? 0.038 0.038 ? 4.60 99.00 1 3.04 3.72 ? ? 0.047 0.047 ? 4.80 98.40 1 2.63 3.04 ? ? 0.082 0.082 ? 4.80 97.80 1 2.36 2.63 ? ? 0.118 0.118 ? 4.80 96.90 1 2.15 2.36 ? ? 0.147 0.147 ? 4.90 96.10 1 1.99 2.15 ? ? 0.206 0.206 ? 4.90 95.40 1 1.86 1.99 ? ? 0.347 0.347 ? 4.90 94.10 1 1.76 1.86 ? ? 0.531 0.531 ? 4.90 93.30 1 1.67 1.76 ? ? 0.703 0.703 ? 4.60 82.00 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -1.1262 _pdbx_refine_tls.origin_y 36.6357 _pdbx_refine_tls.origin_z 33.5289 _pdbx_refine_tls.T[1][1] 0.0415 _pdbx_refine_tls.T[2][2] 0.0505 _pdbx_refine_tls.T[3][3] 0.0588 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] 0.0008 _pdbx_refine_tls.T[2][3] -0.0020 _pdbx_refine_tls.L[1][1] 0.0526 _pdbx_refine_tls.L[2][2] 0.2738 _pdbx_refine_tls.L[3][3] 0.6360 _pdbx_refine_tls.L[1][2] -0.1106 _pdbx_refine_tls.L[1][3] -0.0942 _pdbx_refine_tls.L[2][3] 0.0664 _pdbx_refine_tls.S[1][1] -0.0063 _pdbx_refine_tls.S[2][2] -0.0099 _pdbx_refine_tls.S[3][3] 0.0163 _pdbx_refine_tls.S[1][2] 0.0049 _pdbx_refine_tls.S[1][3] -0.0029 _pdbx_refine_tls.S[2][3] 0.0074 _pdbx_refine_tls.S[2][1] 0.0060 _pdbx_refine_tls.S[3][1] -0.0031 _pdbx_refine_tls.S[3][2] 0.0125 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 346 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 455 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 4MR6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 19.600 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 19.600 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.3.0 'Sun Jun 26 20:05:17 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 StructureStudio . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 679 ? ? O A HOH 769 ? ? 2.08 2 1 O A HOH 683 ? ? O A HOH 754 ? ? 2.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 346 ? CG ? A LEU 5 CG 2 1 Y 1 A LEU 346 ? CD1 ? A LEU 5 CD1 3 1 Y 1 A LEU 346 ? CD2 ? A LEU 5 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 342 ? A SER 1 2 1 Y 1 A MET 343 ? A MET 2 3 1 Y 1 A GLY 344 ? A GLY 3 4 1 Y 1 A LYS 345 ? A LYS 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1K0 O1 O N N 1 1K0 C1 C N N 2 1K0 C2 C Y N 3 1K0 C3 C Y N 4 1K0 C4 C Y N 5 1K0 N1 N N N 6 1K0 C5 C N N 7 1K0 O2 O N N 8 1K0 C6 C Y N 9 1K0 O3 O N N 10 1K0 N2 N N N 11 1K0 C7 C N N 12 1K0 C8 C N N 13 1K0 O4 O N N 14 1K0 O5 O N N 15 1K0 C9 C Y N 16 1K0 C18 C Y N 17 1K0 C16 C Y N 18 1K0 C17 C N N 19 1K0 C13 C Y N 20 1K0 C14 C N N 21 1K0 C15 C N N 22 1K0 C11 C Y N 23 1K0 C12 C N N 24 1K0 C10 C Y N 25 1K0 C19 C Y N 26 1K0 C20 C Y N 27 1K0 H1 H N N 28 1K0 H2 H N N 29 1K0 H3 H N N 30 1K0 H4 H N N 31 1K0 H5 H N N 32 1K0 H6 H N N 33 1K0 H7 H N N 34 1K0 H8 H N N 35 1K0 H9 H N N 36 1K0 H10 H N N 37 1K0 H11 H N N 38 1K0 H12 H N N 39 1K0 H13 H N N 40 1K0 H14 H N N 41 1K0 H15 H N N 42 1K0 H16 H N N 43 1K0 H17 H N N 44 1K0 H18 H N N 45 1K0 H19 H N N 46 1K0 H20 H N N 47 1K0 H21 H N N 48 1K0 H22 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 DMS S S N N 137 DMS O O N N 138 DMS C1 C N N 139 DMS C2 C N N 140 DMS H11 H N N 141 DMS H12 H N N 142 DMS H13 H N N 143 DMS H21 H N N 144 DMS H22 H N N 145 DMS H23 H N N 146 EDO C1 C N N 147 EDO O1 O N N 148 EDO C2 C N N 149 EDO O2 O N N 150 EDO H11 H N N 151 EDO H12 H N N 152 EDO HO1 H N N 153 EDO H21 H N N 154 EDO H22 H N N 155 EDO HO2 H N N 156 GLN N N N N 157 GLN CA C N S 158 GLN C C N N 159 GLN O O N N 160 GLN CB C N N 161 GLN CG C N N 162 GLN CD C N N 163 GLN OE1 O N N 164 GLN NE2 N N N 165 GLN OXT O N N 166 GLN H H N N 167 GLN H2 H N N 168 GLN HA H N N 169 GLN HB2 H N N 170 GLN HB3 H N N 171 GLN HG2 H N N 172 GLN HG3 H N N 173 GLN HE21 H N N 174 GLN HE22 H N N 175 GLN HXT H N N 176 GLU N N N N 177 GLU CA C N S 178 GLU C C N N 179 GLU O O N N 180 GLU CB C N N 181 GLU CG C N N 182 GLU CD C N N 183 GLU OE1 O N N 184 GLU OE2 O N N 185 GLU OXT O N N 186 GLU H H N N 187 GLU H2 H N N 188 GLU HA H N N 189 GLU HB2 H N N 190 GLU HB3 H N N 191 GLU HG2 H N N 192 GLU HG3 H N N 193 GLU HE2 H N N 194 GLU HXT H N N 195 GLY N N N N 196 GLY CA C N N 197 GLY C C N N 198 GLY O O N N 199 GLY OXT O N N 200 GLY H H N N 201 GLY H2 H N N 202 GLY HA2 H N N 203 GLY HA3 H N N 204 GLY HXT H N N 205 HIS N N N N 206 HIS CA C N S 207 HIS C C N N 208 HIS O O N N 209 HIS CB C N N 210 HIS CG C Y N 211 HIS ND1 N Y N 212 HIS CD2 C Y N 213 HIS CE1 C Y N 214 HIS NE2 N Y N 215 HIS OXT O N N 216 HIS H H N N 217 HIS H2 H N N 218 HIS HA H N N 219 HIS HB2 H N N 220 HIS HB3 H N N 221 HIS HD1 H N N 222 HIS HD2 H N N 223 HIS HE1 H N N 224 HIS HE2 H N N 225 HIS HXT H N N 226 HOH O O N N 227 HOH H1 H N N 228 HOH H2 H N N 229 ILE N N N N 230 ILE CA C N S 231 ILE C C N N 232 ILE O O N N 233 ILE CB C N S 234 ILE CG1 C N N 235 ILE CG2 C N N 236 ILE CD1 C N N 237 ILE OXT O N N 238 ILE H H N N 239 ILE H2 H N N 240 ILE HA H N N 241 ILE HB H N N 242 ILE HG12 H N N 243 ILE HG13 H N N 244 ILE HG21 H N N 245 ILE HG22 H N N 246 ILE HG23 H N N 247 ILE HD11 H N N 248 ILE HD12 H N N 249 ILE HD13 H N N 250 ILE HXT H N N 251 LEU N N N N 252 LEU CA C N S 253 LEU C C N N 254 LEU O O N N 255 LEU CB C N N 256 LEU CG C N N 257 LEU CD1 C N N 258 LEU CD2 C N N 259 LEU OXT O N N 260 LEU H H N N 261 LEU H2 H N N 262 LEU HA H N N 263 LEU HB2 H N N 264 LEU HB3 H N N 265 LEU HG H N N 266 LEU HD11 H N N 267 LEU HD12 H N N 268 LEU HD13 H N N 269 LEU HD21 H N N 270 LEU HD22 H N N 271 LEU HD23 H N N 272 LEU HXT H N N 273 LYS N N N N 274 LYS CA C N S 275 LYS C C N N 276 LYS O O N N 277 LYS CB C N N 278 LYS CG C N N 279 LYS CD C N N 280 LYS CE C N N 281 LYS NZ N N N 282 LYS OXT O N N 283 LYS H H N N 284 LYS H2 H N N 285 LYS HA H N N 286 LYS HB2 H N N 287 LYS HB3 H N N 288 LYS HG2 H N N 289 LYS HG3 H N N 290 LYS HD2 H N N 291 LYS HD3 H N N 292 LYS HE2 H N N 293 LYS HE3 H N N 294 LYS HZ1 H N N 295 LYS HZ2 H N N 296 LYS HZ3 H N N 297 LYS HXT H N N 298 MET N N N N 299 MET CA C N S 300 MET C C N N 301 MET O O N N 302 MET CB C N N 303 MET CG C N N 304 MET SD S N N 305 MET CE C N N 306 MET OXT O N N 307 MET H H N N 308 MET H2 H N N 309 MET HA H N N 310 MET HB2 H N N 311 MET HB3 H N N 312 MET HG2 H N N 313 MET HG3 H N N 314 MET HE1 H N N 315 MET HE2 H N N 316 MET HE3 H N N 317 MET HXT H N N 318 PHE N N N N 319 PHE CA C N S 320 PHE C C N N 321 PHE O O N N 322 PHE CB C N N 323 PHE CG C Y N 324 PHE CD1 C Y N 325 PHE CD2 C Y N 326 PHE CE1 C Y N 327 PHE CE2 C Y N 328 PHE CZ C Y N 329 PHE OXT O N N 330 PHE H H N N 331 PHE H2 H N N 332 PHE HA H N N 333 PHE HB2 H N N 334 PHE HB3 H N N 335 PHE HD1 H N N 336 PHE HD2 H N N 337 PHE HE1 H N N 338 PHE HE2 H N N 339 PHE HZ H N N 340 PHE HXT H N N 341 PRO N N N N 342 PRO CA C N S 343 PRO C C N N 344 PRO O O N N 345 PRO CB C N N 346 PRO CG C N N 347 PRO CD C N N 348 PRO OXT O N N 349 PRO H H N N 350 PRO HA H N N 351 PRO HB2 H N N 352 PRO HB3 H N N 353 PRO HG2 H N N 354 PRO HG3 H N N 355 PRO HD2 H N N 356 PRO HD3 H N N 357 PRO HXT H N N 358 SER N N N N 359 SER CA C N S 360 SER C C N N 361 SER O O N N 362 SER CB C N N 363 SER OG O N N 364 SER OXT O N N 365 SER H H N N 366 SER H2 H N N 367 SER HA H N N 368 SER HB2 H N N 369 SER HB3 H N N 370 SER HG H N N 371 SER HXT H N N 372 THR N N N N 373 THR CA C N S 374 THR C C N N 375 THR O O N N 376 THR CB C N R 377 THR OG1 O N N 378 THR CG2 C N N 379 THR OXT O N N 380 THR H H N N 381 THR H2 H N N 382 THR HA H N N 383 THR HB H N N 384 THR HG1 H N N 385 THR HG21 H N N 386 THR HG22 H N N 387 THR HG23 H N N 388 THR HXT H N N 389 TRP N N N N 390 TRP CA C N S 391 TRP C C N N 392 TRP O O N N 393 TRP CB C N N 394 TRP CG C Y N 395 TRP CD1 C Y N 396 TRP CD2 C Y N 397 TRP NE1 N Y N 398 TRP CE2 C Y N 399 TRP CE3 C Y N 400 TRP CZ2 C Y N 401 TRP CZ3 C Y N 402 TRP CH2 C Y N 403 TRP OXT O N N 404 TRP H H N N 405 TRP H2 H N N 406 TRP HA H N N 407 TRP HB2 H N N 408 TRP HB3 H N N 409 TRP HD1 H N N 410 TRP HE1 H N N 411 TRP HE3 H N N 412 TRP HZ2 H N N 413 TRP HZ3 H N N 414 TRP HH2 H N N 415 TRP HXT H N N 416 TYR N N N N 417 TYR CA C N S 418 TYR C C N N 419 TYR O O N N 420 TYR CB C N N 421 TYR CG C Y N 422 TYR CD1 C Y N 423 TYR CD2 C Y N 424 TYR CE1 C Y N 425 TYR CE2 C Y N 426 TYR CZ C Y N 427 TYR OH O N N 428 TYR OXT O N N 429 TYR H H N N 430 TYR H2 H N N 431 TYR HA H N N 432 TYR HB2 H N N 433 TYR HB3 H N N 434 TYR HD1 H N N 435 TYR HD2 H N N 436 TYR HE1 H N N 437 TYR HE2 H N N 438 TYR HH H N N 439 TYR HXT H N N 440 VAL N N N N 441 VAL CA C N S 442 VAL C C N N 443 VAL O O N N 444 VAL CB C N N 445 VAL CG1 C N N 446 VAL CG2 C N N 447 VAL OXT O N N 448 VAL H H N N 449 VAL H2 H N N 450 VAL HA H N N 451 VAL HB H N N 452 VAL HG11 H N N 453 VAL HG12 H N N 454 VAL HG13 H N N 455 VAL HG21 H N N 456 VAL HG22 H N N 457 VAL HG23 H N N 458 VAL HXT H N N 459 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1K0 C5 O2 sing N N 1 1K0 O2 C4 sing N N 2 1K0 C3 C4 doub Y N 3 1K0 C3 C2 sing Y N 4 1K0 O1 C2 sing N N 5 1K0 O1 C1 sing N N 6 1K0 C4 C6 sing Y N 7 1K0 C2 C20 doub Y N 8 1K0 C6 C19 doub Y N 9 1K0 C6 C7 sing N N 10 1K0 C20 C19 sing Y N 11 1K0 O5 C7 doub N N 12 1K0 C19 N2 sing N N 13 1K0 C7 N1 sing N N 14 1K0 N2 C8 doub N N 15 1K0 N1 C8 sing N N 16 1K0 C8 C9 sing N N 17 1K0 C9 C18 doub Y N 18 1K0 C9 C10 sing Y N 19 1K0 C18 C16 sing Y N 20 1K0 C10 C11 doub Y N 21 1K0 C16 C17 sing N N 22 1K0 C16 C13 doub Y N 23 1K0 C11 C13 sing Y N 24 1K0 C11 C12 sing N N 25 1K0 C13 O3 sing N N 26 1K0 O3 C14 sing N N 27 1K0 C14 C15 sing N N 28 1K0 O4 C15 sing N N 29 1K0 C1 H1 sing N N 30 1K0 C1 H2 sing N N 31 1K0 C1 H3 sing N N 32 1K0 C3 H4 sing N N 33 1K0 N1 H5 sing N N 34 1K0 C5 H6 sing N N 35 1K0 C5 H7 sing N N 36 1K0 C5 H8 sing N N 37 1K0 O4 H9 sing N N 38 1K0 C18 H10 sing N N 39 1K0 C17 H11 sing N N 40 1K0 C17 H12 sing N N 41 1K0 C17 H13 sing N N 42 1K0 C14 H14 sing N N 43 1K0 C14 H15 sing N N 44 1K0 C15 H16 sing N N 45 1K0 C15 H17 sing N N 46 1K0 C12 H18 sing N N 47 1K0 C12 H19 sing N N 48 1K0 C12 H20 sing N N 49 1K0 C10 H21 sing N N 50 1K0 C20 H22 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 DMS S O doub N N 134 DMS S C1 sing N N 135 DMS S C2 sing N N 136 DMS C1 H11 sing N N 137 DMS C1 H12 sing N N 138 DMS C1 H13 sing N N 139 DMS C2 H21 sing N N 140 DMS C2 H22 sing N N 141 DMS C2 H23 sing N N 142 EDO C1 O1 sing N N 143 EDO C1 C2 sing N N 144 EDO C1 H11 sing N N 145 EDO C1 H12 sing N N 146 EDO O1 HO1 sing N N 147 EDO C2 O2 sing N N 148 EDO C2 H21 sing N N 149 EDO C2 H22 sing N N 150 EDO O2 HO2 sing N N 151 GLN N CA sing N N 152 GLN N H sing N N 153 GLN N H2 sing N N 154 GLN CA C sing N N 155 GLN CA CB sing N N 156 GLN CA HA sing N N 157 GLN C O doub N N 158 GLN C OXT sing N N 159 GLN CB CG sing N N 160 GLN CB HB2 sing N N 161 GLN CB HB3 sing N N 162 GLN CG CD sing N N 163 GLN CG HG2 sing N N 164 GLN CG HG3 sing N N 165 GLN CD OE1 doub N N 166 GLN CD NE2 sing N N 167 GLN NE2 HE21 sing N N 168 GLN NE2 HE22 sing N N 169 GLN OXT HXT sing N N 170 GLU N CA sing N N 171 GLU N H sing N N 172 GLU N H2 sing N N 173 GLU CA C sing N N 174 GLU CA CB sing N N 175 GLU CA HA sing N N 176 GLU C O doub N N 177 GLU C OXT sing N N 178 GLU CB CG sing N N 179 GLU CB HB2 sing N N 180 GLU CB HB3 sing N N 181 GLU CG CD sing N N 182 GLU CG HG2 sing N N 183 GLU CG HG3 sing N N 184 GLU CD OE1 doub N N 185 GLU CD OE2 sing N N 186 GLU OE2 HE2 sing N N 187 GLU OXT HXT sing N N 188 GLY N CA sing N N 189 GLY N H sing N N 190 GLY N H2 sing N N 191 GLY CA C sing N N 192 GLY CA HA2 sing N N 193 GLY CA HA3 sing N N 194 GLY C O doub N N 195 GLY C OXT sing N N 196 GLY OXT HXT sing N N 197 HIS N CA sing N N 198 HIS N H sing N N 199 HIS N H2 sing N N 200 HIS CA C sing N N 201 HIS CA CB sing N N 202 HIS CA HA sing N N 203 HIS C O doub N N 204 HIS C OXT sing N N 205 HIS CB CG sing N N 206 HIS CB HB2 sing N N 207 HIS CB HB3 sing N N 208 HIS CG ND1 sing Y N 209 HIS CG CD2 doub Y N 210 HIS ND1 CE1 doub Y N 211 HIS ND1 HD1 sing N N 212 HIS CD2 NE2 sing Y N 213 HIS CD2 HD2 sing N N 214 HIS CE1 NE2 sing Y N 215 HIS CE1 HE1 sing N N 216 HIS NE2 HE2 sing N N 217 HIS OXT HXT sing N N 218 HOH O H1 sing N N 219 HOH O H2 sing N N 220 ILE N CA sing N N 221 ILE N H sing N N 222 ILE N H2 sing N N 223 ILE CA C sing N N 224 ILE CA CB sing N N 225 ILE CA HA sing N N 226 ILE C O doub N N 227 ILE C OXT sing N N 228 ILE CB CG1 sing N N 229 ILE CB CG2 sing N N 230 ILE CB HB sing N N 231 ILE CG1 CD1 sing N N 232 ILE CG1 HG12 sing N N 233 ILE CG1 HG13 sing N N 234 ILE CG2 HG21 sing N N 235 ILE CG2 HG22 sing N N 236 ILE CG2 HG23 sing N N 237 ILE CD1 HD11 sing N N 238 ILE CD1 HD12 sing N N 239 ILE CD1 HD13 sing N N 240 ILE OXT HXT sing N N 241 LEU N CA sing N N 242 LEU N H sing N N 243 LEU N H2 sing N N 244 LEU CA C sing N N 245 LEU CA CB sing N N 246 LEU CA HA sing N N 247 LEU C O doub N N 248 LEU C OXT sing N N 249 LEU CB CG sing N N 250 LEU CB HB2 sing N N 251 LEU CB HB3 sing N N 252 LEU CG CD1 sing N N 253 LEU CG CD2 sing N N 254 LEU CG HG sing N N 255 LEU CD1 HD11 sing N N 256 LEU CD1 HD12 sing N N 257 LEU CD1 HD13 sing N N 258 LEU CD2 HD21 sing N N 259 LEU CD2 HD22 sing N N 260 LEU CD2 HD23 sing N N 261 LEU OXT HXT sing N N 262 LYS N CA sing N N 263 LYS N H sing N N 264 LYS N H2 sing N N 265 LYS CA C sing N N 266 LYS CA CB sing N N 267 LYS CA HA sing N N 268 LYS C O doub N N 269 LYS C OXT sing N N 270 LYS CB CG sing N N 271 LYS CB HB2 sing N N 272 LYS CB HB3 sing N N 273 LYS CG CD sing N N 274 LYS CG HG2 sing N N 275 LYS CG HG3 sing N N 276 LYS CD CE sing N N 277 LYS CD HD2 sing N N 278 LYS CD HD3 sing N N 279 LYS CE NZ sing N N 280 LYS CE HE2 sing N N 281 LYS CE HE3 sing N N 282 LYS NZ HZ1 sing N N 283 LYS NZ HZ2 sing N N 284 LYS NZ HZ3 sing N N 285 LYS OXT HXT sing N N 286 MET N CA sing N N 287 MET N H sing N N 288 MET N H2 sing N N 289 MET CA C sing N N 290 MET CA CB sing N N 291 MET CA HA sing N N 292 MET C O doub N N 293 MET C OXT sing N N 294 MET CB CG sing N N 295 MET CB HB2 sing N N 296 MET CB HB3 sing N N 297 MET CG SD sing N N 298 MET CG HG2 sing N N 299 MET CG HG3 sing N N 300 MET SD CE sing N N 301 MET CE HE1 sing N N 302 MET CE HE2 sing N N 303 MET CE HE3 sing N N 304 MET OXT HXT sing N N 305 PHE N CA sing N N 306 PHE N H sing N N 307 PHE N H2 sing N N 308 PHE CA C sing N N 309 PHE CA CB sing N N 310 PHE CA HA sing N N 311 PHE C O doub N N 312 PHE C OXT sing N N 313 PHE CB CG sing N N 314 PHE CB HB2 sing N N 315 PHE CB HB3 sing N N 316 PHE CG CD1 doub Y N 317 PHE CG CD2 sing Y N 318 PHE CD1 CE1 sing Y N 319 PHE CD1 HD1 sing N N 320 PHE CD2 CE2 doub Y N 321 PHE CD2 HD2 sing N N 322 PHE CE1 CZ doub Y N 323 PHE CE1 HE1 sing N N 324 PHE CE2 CZ sing Y N 325 PHE CE2 HE2 sing N N 326 PHE CZ HZ sing N N 327 PHE OXT HXT sing N N 328 PRO N CA sing N N 329 PRO N CD sing N N 330 PRO N H sing N N 331 PRO CA C sing N N 332 PRO CA CB sing N N 333 PRO CA HA sing N N 334 PRO C O doub N N 335 PRO C OXT sing N N 336 PRO CB CG sing N N 337 PRO CB HB2 sing N N 338 PRO CB HB3 sing N N 339 PRO CG CD sing N N 340 PRO CG HG2 sing N N 341 PRO CG HG3 sing N N 342 PRO CD HD2 sing N N 343 PRO CD HD3 sing N N 344 PRO OXT HXT sing N N 345 SER N CA sing N N 346 SER N H sing N N 347 SER N H2 sing N N 348 SER CA C sing N N 349 SER CA CB sing N N 350 SER CA HA sing N N 351 SER C O doub N N 352 SER C OXT sing N N 353 SER CB OG sing N N 354 SER CB HB2 sing N N 355 SER CB HB3 sing N N 356 SER OG HG sing N N 357 SER OXT HXT sing N N 358 THR N CA sing N N 359 THR N H sing N N 360 THR N H2 sing N N 361 THR CA C sing N N 362 THR CA CB sing N N 363 THR CA HA sing N N 364 THR C O doub N N 365 THR C OXT sing N N 366 THR CB OG1 sing N N 367 THR CB CG2 sing N N 368 THR CB HB sing N N 369 THR OG1 HG1 sing N N 370 THR CG2 HG21 sing N N 371 THR CG2 HG22 sing N N 372 THR CG2 HG23 sing N N 373 THR OXT HXT sing N N 374 TRP N CA sing N N 375 TRP N H sing N N 376 TRP N H2 sing N N 377 TRP CA C sing N N 378 TRP CA CB sing N N 379 TRP CA HA sing N N 380 TRP C O doub N N 381 TRP C OXT sing N N 382 TRP CB CG sing N N 383 TRP CB HB2 sing N N 384 TRP CB HB3 sing N N 385 TRP CG CD1 doub Y N 386 TRP CG CD2 sing Y N 387 TRP CD1 NE1 sing Y N 388 TRP CD1 HD1 sing N N 389 TRP CD2 CE2 doub Y N 390 TRP CD2 CE3 sing Y N 391 TRP NE1 CE2 sing Y N 392 TRP NE1 HE1 sing N N 393 TRP CE2 CZ2 sing Y N 394 TRP CE3 CZ3 doub Y N 395 TRP CE3 HE3 sing N N 396 TRP CZ2 CH2 doub Y N 397 TRP CZ2 HZ2 sing N N 398 TRP CZ3 CH2 sing Y N 399 TRP CZ3 HZ3 sing N N 400 TRP CH2 HH2 sing N N 401 TRP OXT HXT sing N N 402 TYR N CA sing N N 403 TYR N H sing N N 404 TYR N H2 sing N N 405 TYR CA C sing N N 406 TYR CA CB sing N N 407 TYR CA HA sing N N 408 TYR C O doub N N 409 TYR C OXT sing N N 410 TYR CB CG sing N N 411 TYR CB HB2 sing N N 412 TYR CB HB3 sing N N 413 TYR CG CD1 doub Y N 414 TYR CG CD2 sing Y N 415 TYR CD1 CE1 sing Y N 416 TYR CD1 HD1 sing N N 417 TYR CD2 CE2 doub Y N 418 TYR CD2 HD2 sing N N 419 TYR CE1 CZ doub Y N 420 TYR CE1 HE1 sing N N 421 TYR CE2 CZ sing Y N 422 TYR CE2 HE2 sing N N 423 TYR CZ OH sing N N 424 TYR OH HH sing N N 425 TYR OXT HXT sing N N 426 VAL N CA sing N N 427 VAL N H sing N N 428 VAL N H2 sing N N 429 VAL CA C sing N N 430 VAL CA CB sing N N 431 VAL CA HA sing N N 432 VAL C O doub N N 433 VAL C OXT sing N N 434 VAL CB CG1 sing N N 435 VAL CB CG2 sing N N 436 VAL CB HB sing N N 437 VAL CG1 HG11 sing N N 438 VAL CG1 HG12 sing N N 439 VAL CG1 HG13 sing N N 440 VAL CG2 HG21 sing N N 441 VAL CG2 HG22 sing N N 442 VAL CG2 HG23 sing N N 443 VAL OXT HXT sing N N 444 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'DIMETHYL SULFOXIDE' DMS 4 '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 1K0 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ONI _pdbx_initial_refinement_model.details 'PDB ENTRY 3ONI' #