data_4MS5
# 
_entry.id   4MS5 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.379 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4MS5         pdb_00004ms5 10.2210/pdb4ms5/pdb 
NDB   NA2735       ?            ?                   
RCSB  RCSB082298   ?            ?                   
WWPDB D_1000082298 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4MS5 
_pdbx_database_status.recvd_initial_deposition_date   2013-09-18 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Hall, J.P.'   1 
'Cardin, C.J.' 2 
# 
_citation.id                        primary 
_citation.title                     'The effects of disubstitution on the binding of ruthenium complexes to DNA' 
_citation.journal_abbrev            'Thesis, University of Reading' 
_citation.journal_volume            ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.year                      2014 
_citation.journal_id_ASTM           ? 
_citation.country                   ? 
_citation.journal_id_ISSN           ? 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      ? 
# 
_citation_author.citation_id        primary 
_citation_author.name               'Hall, J.P.' 
_citation_author.ordinal            1 
_citation_author.identifier_ORCID   ? 
# 
_cell.entry_id           4MS5 
_cell.length_a           47.610 
_cell.length_b           47.610 
_cell.length_c           34.600 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4MS5 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn DNA 3045.992 1  ? ? ? ? 
2 non-polymer syn 'BARIUM ION' 137.327  1  ? ? ? ? 
3 non-polymer syn 
"(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
783.713  1  ? ? ? ? 
4 water       nat water 18.015   15 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCGGATCCGG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DG n 
1 4  DG n 
1 5  DA n 
1 6  DT n 
1 7  DC n 
1 8  DC n 
1 9  DG n 
1 10 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'DNA synthesised by ATDBio' 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4MS5 
_struct_ref.pdbx_db_accession          4MS5 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CCGGATCCGG 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              4MS5 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             4MS5 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BA  non-polymer   . 'BARIUM ION' ? 'Ba 2'                137.327 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'     331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'      307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'     347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P'     322.208 
HOH non-polymer   . WATER ? 'H2 O'                18.015  
RKF non-polymer   . 
"(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
? 'C38 H20 F2 N12 Ru 2' 783.713 
# 
_exptl.entry_id          4MS5 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.22 
_exptl_crystal.density_percent_sol   61.78 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            277 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.3 
_exptl_crystal_grow.pdbx_details    
;1ul 1mM (CCGGATCCGG)2, 1ul 2mM Ru(TAP)2(dppz-11,12-(F)2]Cl2, 6ul of 40mM Na-cacodylate, 12mM spermine, 20mM BaCl2, 80mM KCl, 10% 2-methyl-2,4-pentanediol. Equilibriated against 1ml 35% 2-methyl-2,4-pentanediol, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               PIXEL 
_diffrn_detector.type                   'DECTRIS PILATUS 6M' 
_diffrn_detector.pdbx_collection_date   2012-12-13 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'dual Si(111)' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.8266 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I02' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I02 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.8266 
# 
_reflns.entry_id                     4MS5 
_reflns.observed_criterion_sigma_I   2 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             34.60 
_reflns.d_resolution_high            2.23 
_reflns.number_obs                   2136 
_reflns.number_all                   2136 
_reflns.percent_possible_obs         99 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             2.23 
_reflns_shell.d_res_low              2.29 
_reflns_shell.percent_possible_all   99.7 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 4MS5 
_refine.ls_number_reflns_obs                     2016 
_refine.ls_number_reflns_all                     2016 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          . 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             28.01 
_refine.ls_d_res_high                            2.23 
_refine.ls_percent_reflns_obs                    98.05 
_refine.ls_R_factor_obs                          0.22011 
_refine.ls_R_factor_all                          0.22011 
_refine.ls_R_factor_R_work                       0.21882 
_refine.ls_R_factor_R_free                       0.24525 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 4.5 
_refine.ls_number_reflns_R_free                  95 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.950 
_refine.correlation_coeff_Fo_to_Fc_free          0.941 
_refine.B_iso_mean                               36.835 
_refine.aniso_B[1][1]                            0.13 
_refine.aniso_B[2][2]                            0.13 
_refine.aniso_B[3][3]                            -0.26 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      'PDB ENTRY 3QRN' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.269 
_refine.pdbx_overall_ESU_R_Free                  0.205 
_refine.overall_SU_ML                            0.184 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             8.526 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   202 
_refine_hist.pdbx_number_atoms_ligand         54 
_refine_hist.number_atoms_solvent             15 
_refine_hist.number_atoms_total               271 
_refine_hist.d_res_high                       2.23 
_refine_hist.d_res_low                        28.01 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
r_bond_refined_d             0.010 0.013  ? 292 ? 'X-RAY DIFFRACTION' 
r_bond_other_d               0.092 0.020  ? 132 ? 'X-RAY DIFFRACTION' 
r_angle_refined_deg          2.433 1.610  ? 460 ? 'X-RAY DIFFRACTION' 
r_angle_other_deg            1.863 3.000  ? 304 ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_1_deg       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_2_deg       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_3_deg       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_4_deg       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_chiral_restr               0.107 0.200  ? 30  ? 'X-RAY DIFFRACTION' 
r_gen_planes_refined         0.019 0.020  ? 176 ? 'X-RAY DIFFRACTION' 
r_gen_planes_other           0.009 0.020  ? 74  ? 'X-RAY DIFFRACTION' 
r_nbd_refined                ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbd_other                  ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_refined              ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_other                ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_refined        ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_other          ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_refined          ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_other            ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_refined       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_other         ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_refined     ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_other       ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_refined ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_other   ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_it                  ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_other               ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcangle_it                 ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcangle_other              ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_scbond_it                  3.279 3.726  ? 292 ? 'X-RAY DIFFRACTION' 
r_scbond_other               3.273 3.723  ? 293 ? 'X-RAY DIFFRACTION' 
r_scangle_it                 ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_scangle_other              4.728 5.557  ? 461 ? 'X-RAY DIFFRACTION' 
r_long_range_B_refined       6.030 39.900 ? 693 ? 'X-RAY DIFFRACTION' 
r_long_range_B_other         6.031 39.902 ? 692 ? 'X-RAY DIFFRACTION' 
r_rigid_bond_restr           ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_sphericity_free            ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_sphericity_bonded          ?     ?      ? ?   ? 'X-RAY DIFFRACTION' 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       2.231 
_refine_ls_shell.d_res_low                        2.289 
_refine_ls_shell.number_reflns_R_work             146 
_refine_ls_shell.R_factor_R_work                  0.356 
_refine_ls_shell.percent_reflns_obs               99.36 
_refine_ls_shell.R_factor_R_free                  0.388 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             10 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  4MS5 
_struct.title                     'Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4MS5 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Intercalation, semi-intercalation, DNA, ruthenium' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 4  O6 ? ? ? 1_555 B BA .  BA ? ? A DG 4  A BA 101 1_555 ? ? ? ? ? ? ?            3.057 ? ? 
hydrog1  hydrog ? ? A DC 1  N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1  A DG 10  8_555 ? ? ? ? ? ? 'DC-DG PAIR' ?     ? ? 
hydrog2  hydrog ? ? A DC 2  N3 ? ? ? 1_555 A DG 9  N1 ? ? A DC 2  A DG 9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 2  N4 ? ? ? 1_555 A DG 9  O6 ? ? A DC 2  A DG 9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DC 2  O2 ? ? ? 1_555 A DG 9  N2 ? ? A DC 2  A DG 9   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 3  N1 ? ? ? 1_555 A DC 8  N3 ? ? A DG 3  A DC 8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 3  N2 ? ? ? 1_555 A DC 8  O2 ? ? A DG 3  A DC 8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 3  O6 ? ? ? 1_555 A DC 8  N4 ? ? A DG 3  A DC 8   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DG 4  N1 ? ? ? 1_555 A DC 7  N3 ? ? A DG 4  A DC 7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DG 4  N2 ? ? ? 1_555 A DC 7  O2 ? ? A DG 4  A DC 7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  O6 ? ? ? 1_555 A DC 7  N4 ? ? A DG 4  A DC 7   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DA 5  N1 ? ? ? 1_555 A DT 6  N3 ? ? A DA 5  A DT 6   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DA 5  N6 ? ? ? 1_555 A DT 6  O4 ? ? A DA 5  A DT 6   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DT 6  N3 ? ? ? 1_555 A DA 5  N1 ? ? A DT 6  A DA 5   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DT 6  O4 ? ? ? 1_555 A DA 5  N6 ? ? A DT 6  A DA 5   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DC 7  N3 ? ? ? 1_555 A DG 4  N1 ? ? A DC 7  A DG 4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DC 7  N4 ? ? ? 1_555 A DG 4  O6 ? ? A DC 7  A DG 4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DC 7  O2 ? ? ? 1_555 A DG 4  N2 ? ? A DC 7  A DG 4   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DC 8  N3 ? ? ? 1_555 A DG 3  N1 ? ? A DC 8  A DG 3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DC 8  N4 ? ? ? 1_555 A DG 3  O6 ? ? A DC 8  A DG 3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DC 8  O2 ? ? ? 1_555 A DG 3  N2 ? ? A DC 8  A DG 3   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DG 9  N1 ? ? ? 1_555 A DC 2  N3 ? ? A DG 9  A DC 2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DG 9  N2 ? ? ? 1_555 A DC 2  O2 ? ? A DG 9  A DC 2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DG 9  O6 ? ? ? 1_555 A DC 2  N4 ? ? A DG 9  A DC 2   8_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1  N4 ? ? A DG 10 A DC 1   8_555 ? ? ? ? ? ? 'DG-DC PAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A BA  101 ? 2  'BINDING SITE FOR RESIDUE BA A 101'  
AC2 Software A RKF 102 ? 10 'BINDING SITE FOR RESIDUE RKF A 102' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 2  DG  A 3  ? DG  A 3   . ? 1_555 ? 
2  AC1 2  DG  A 4  ? DG  A 4   . ? 1_555 ? 
3  AC2 10 DC  A 1  ? DC  A 1   . ? 8_555 ? 
4  AC2 10 DC  A 2  ? DC  A 2   . ? 8_555 ? 
5  AC2 10 DG  A 3  ? DG  A 3   . ? 6_445 ? 
6  AC2 10 DG  A 3  ? DG  A 3   . ? 8_555 ? 
7  AC2 10 DG  A 4  ? DG  A 4   . ? 6_445 ? 
8  AC2 10 DC  A 7  ? DC  A 7   . ? 3_444 ? 
9  AC2 10 DC  A 8  ? DC  A 8   . ? 3_444 ? 
10 AC2 10 DG  A 9  ? DG  A 9   . ? 1_555 ? 
11 AC2 10 DG  A 10 ? DG  A 10  . ? 1_555 ? 
12 AC2 10 HOH D .  ? HOH A 215 . ? 4_545 ? 
# 
_database_PDB_matrix.entry_id          4MS5 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    4MS5 
_atom_sites.fract_transf_matrix[1][1]   0.021004 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   -0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.021004 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   -0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.028902 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
F  
N  
O  
P  
RU 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DC 2  2  2  DC DC A . n 
A 1 3  DG 3  3  3  DG DG A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DA 5  5  5  DA DA A . n 
A 1 6  DT 6  6  6  DT DT A . n 
A 1 7  DC 7  7  7  DC DC A . n 
A 1 8  DC 8  8  8  DC DC A . n 
A 1 9  DG 9  9  9  DG DG A . n 
A 1 10 DG 10 10 10 DG DG A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 BA  1  101 102 BA  BA  A . 
C 3 RKF 1  102 11  RKF RKF A . 
D 4 HOH 1  201 1   HOH HOH A . 
D 4 HOH 2  202 3   HOH HOH A . 
D 4 HOH 3  203 4   HOH HOH A . 
D 4 HOH 4  204 5   HOH HOH A . 
D 4 HOH 5  205 6   HOH HOH A . 
D 4 HOH 6  206 7   HOH HOH A . 
D 4 HOH 7  207 11  HOH HOH A . 
D 4 HOH 8  208 13  HOH HOH A . 
D 4 HOH 9  209 14  HOH HOH A . 
D 4 HOH 10 210 15  HOH HOH A . 
D 4 HOH 11 211 16  HOH HOH A . 
D 4 HOH 12 212 17  HOH HOH A . 
D 4 HOH 13 213 19  HOH HOH A . 
D 4 HOH 14 214 20  HOH HOH A . 
D 4 HOH 15 215 21  HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2020 ? 
1 MORE         -31  ? 
1 'SSA (A^2)'  4360 ? 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z        1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17.3000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2014-10-08 
2 'Structure model' 1 1 2017-03-08 
3 'Structure model' 1 2 2023-09-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Data collection'        
3 3 'Structure model' 'Database references'    
4 3 'Structure model' 'Derived calculations'   
5 3 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_initial_refinement_model 
5 3 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                
2 3 'Structure model' '_database_2.pdbx_database_accession' 
3 3 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 3 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 3 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
GDA     'data collection' .        ? 1 
PHASER  phasing           .        ? 2 
REFMAC  refinement        5.7.0032 ? 3 
XDS     'data reduction'  .        ? 4 
Aimless 'data scaling'    .        ? 5 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BA  BA     BA N N 1   
DA  OP3    O  N N 2   
DA  P      P  N N 3   
DA  OP1    O  N N 4   
DA  OP2    O  N N 5   
DA  "O5'"  O  N N 6   
DA  "C5'"  C  N N 7   
DA  "C4'"  C  N R 8   
DA  "O4'"  O  N N 9   
DA  "C3'"  C  N S 10  
DA  "O3'"  O  N N 11  
DA  "C2'"  C  N N 12  
DA  "C1'"  C  N R 13  
DA  N9     N  Y N 14  
DA  C8     C  Y N 15  
DA  N7     N  Y N 16  
DA  C5     C  Y N 17  
DA  C6     C  Y N 18  
DA  N6     N  N N 19  
DA  N1     N  Y N 20  
DA  C2     C  Y N 21  
DA  N3     N  Y N 22  
DA  C4     C  Y N 23  
DA  HOP3   H  N N 24  
DA  HOP2   H  N N 25  
DA  "H5'"  H  N N 26  
DA  "H5''" H  N N 27  
DA  "H4'"  H  N N 28  
DA  "H3'"  H  N N 29  
DA  "HO3'" H  N N 30  
DA  "H2'"  H  N N 31  
DA  "H2''" H  N N 32  
DA  "H1'"  H  N N 33  
DA  H8     H  N N 34  
DA  H61    H  N N 35  
DA  H62    H  N N 36  
DA  H2     H  N N 37  
DC  OP3    O  N N 38  
DC  P      P  N N 39  
DC  OP1    O  N N 40  
DC  OP2    O  N N 41  
DC  "O5'"  O  N N 42  
DC  "C5'"  C  N N 43  
DC  "C4'"  C  N R 44  
DC  "O4'"  O  N N 45  
DC  "C3'"  C  N S 46  
DC  "O3'"  O  N N 47  
DC  "C2'"  C  N N 48  
DC  "C1'"  C  N R 49  
DC  N1     N  N N 50  
DC  C2     C  N N 51  
DC  O2     O  N N 52  
DC  N3     N  N N 53  
DC  C4     C  N N 54  
DC  N4     N  N N 55  
DC  C5     C  N N 56  
DC  C6     C  N N 57  
DC  HOP3   H  N N 58  
DC  HOP2   H  N N 59  
DC  "H5'"  H  N N 60  
DC  "H5''" H  N N 61  
DC  "H4'"  H  N N 62  
DC  "H3'"  H  N N 63  
DC  "HO3'" H  N N 64  
DC  "H2'"  H  N N 65  
DC  "H2''" H  N N 66  
DC  "H1'"  H  N N 67  
DC  H41    H  N N 68  
DC  H42    H  N N 69  
DC  H5     H  N N 70  
DC  H6     H  N N 71  
DG  OP3    O  N N 72  
DG  P      P  N N 73  
DG  OP1    O  N N 74  
DG  OP2    O  N N 75  
DG  "O5'"  O  N N 76  
DG  "C5'"  C  N N 77  
DG  "C4'"  C  N R 78  
DG  "O4'"  O  N N 79  
DG  "C3'"  C  N S 80  
DG  "O3'"  O  N N 81  
DG  "C2'"  C  N N 82  
DG  "C1'"  C  N R 83  
DG  N9     N  Y N 84  
DG  C8     C  Y N 85  
DG  N7     N  Y N 86  
DG  C5     C  Y N 87  
DG  C6     C  N N 88  
DG  O6     O  N N 89  
DG  N1     N  N N 90  
DG  C2     C  N N 91  
DG  N2     N  N N 92  
DG  N3     N  N N 93  
DG  C4     C  Y N 94  
DG  HOP3   H  N N 95  
DG  HOP2   H  N N 96  
DG  "H5'"  H  N N 97  
DG  "H5''" H  N N 98  
DG  "H4'"  H  N N 99  
DG  "H3'"  H  N N 100 
DG  "HO3'" H  N N 101 
DG  "H2'"  H  N N 102 
DG  "H2''" H  N N 103 
DG  "H1'"  H  N N 104 
DG  H8     H  N N 105 
DG  H1     H  N N 106 
DG  H21    H  N N 107 
DG  H22    H  N N 108 
DT  OP3    O  N N 109 
DT  P      P  N N 110 
DT  OP1    O  N N 111 
DT  OP2    O  N N 112 
DT  "O5'"  O  N N 113 
DT  "C5'"  C  N N 114 
DT  "C4'"  C  N R 115 
DT  "O4'"  O  N N 116 
DT  "C3'"  C  N S 117 
DT  "O3'"  O  N N 118 
DT  "C2'"  C  N N 119 
DT  "C1'"  C  N R 120 
DT  N1     N  N N 121 
DT  C2     C  N N 122 
DT  O2     O  N N 123 
DT  N3     N  N N 124 
DT  C4     C  N N 125 
DT  O4     O  N N 126 
DT  C5     C  N N 127 
DT  C7     C  N N 128 
DT  C6     C  N N 129 
DT  HOP3   H  N N 130 
DT  HOP2   H  N N 131 
DT  "H5'"  H  N N 132 
DT  "H5''" H  N N 133 
DT  "H4'"  H  N N 134 
DT  "H3'"  H  N N 135 
DT  "HO3'" H  N N 136 
DT  "H2'"  H  N N 137 
DT  "H2''" H  N N 138 
DT  "H1'"  H  N N 139 
DT  H3     H  N N 140 
DT  H71    H  N N 141 
DT  H72    H  N N 142 
DT  H73    H  N N 143 
DT  H6     H  N N 144 
HOH O      O  N N 145 
HOH H1     H  N N 146 
HOH H2     H  N N 147 
RKF F2     F  N N 148 
RKF C17    C  Y N 149 
RKF C18    C  Y N 150 
RKF F1     F  N N 151 
RKF C14    C  Y N 152 
RKF C13    C  Y N 153 
RKF N4     N  Y N 154 
RKF C7     C  Y N 155 
RKF C8     C  Y N 156 
RKF C9     C  Y N 157 
RKF C11    C  Y N 158 
RKF C12    C  Y N 159 
RKF C10    C  Y N 160 
RKF N1     N  Y N 161 
RKF C16    C  Y N 162 
RKF C15    C  Y N 163 
RKF N3     N  Y N 164 
RKF C6     C  Y N 165 
RKF C5     C  Y N 166 
RKF C1     C  Y N 167 
RKF C4     C  Y N 168 
RKF C3     C  Y N 169 
RKF C2     C  Y N 170 
RKF N2     N  Y N 171 
RKF RU     RU N N 172 
RKF N12    N  Y N 173 
RKF C36    C  Y N 174 
RKF C38    C  Y N 175 
RKF N5     N  Y N 176 
RKF C20    C  Y N 177 
RKF C21    C  Y N 178 
RKF N6     N  Y N 179 
RKF C19    C  Y N 180 
RKF C22    C  Y N 181 
RKF C23    C  Y N 182 
RKF C24    C  Y N 183 
RKF C25    C  Y N 184 
RKF N7     N  Y N 185 
RKF C27    C  Y N 186 
RKF C28    C  Y N 187 
RKF C26    C  Y N 188 
RKF N8     N  Y N 189 
RKF N9     N  Y N 190 
RKF C29    C  Y N 191 
RKF C30    C  Y N 192 
RKF C31    C  Y N 193 
RKF N10    N  Y N 194 
RKF C32    C  Y N 195 
RKF C33    C  Y N 196 
RKF C34    C  Y N 197 
RKF C35    C  Y N 198 
RKF N11    N  Y N 199 
RKF C37    C  Y N 200 
RKF H1     H  N N 201 
RKF H2     H  N N 202 
RKF H3     H  N N 203 
RKF H4     H  N N 204 
RKF H5     H  N N 205 
RKF H6     H  N N 206 
RKF H7     H  N N 207 
RKF H8     H  N N 208 
RKF H9     H  N N 209 
RKF H10    H  N N 210 
RKF H11    H  N N 211 
RKF H12    H  N N 212 
RKF H13    H  N N 213 
RKF H14    H  N N 214 
RKF H15    H  N N 215 
RKF H16    H  N N 216 
RKF H17    H  N N 217 
RKF H18    H  N N 218 
RKF H19    H  N N 219 
RKF H20    H  N N 220 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
RKF F2    C17    sing N N 152 
RKF F1    C18    sing N N 153 
RKF C17   C18    doub Y N 154 
RKF C17   C16    sing Y N 155 
RKF C18   C14    sing Y N 156 
RKF C16   C15    doub Y N 157 
RKF C14   C13    doub Y N 158 
RKF C15   C13    sing Y N 159 
RKF C15   N3     sing Y N 160 
RKF C13   N4     sing Y N 161 
RKF N10   C31    doub Y N 162 
RKF N10   C32    sing Y N 163 
RKF N3    C6     doub Y N 164 
RKF C31   C30    sing Y N 165 
RKF N4    C7     doub Y N 166 
RKF C33   C32    doub Y N 167 
RKF C33   C34    sing Y N 168 
RKF C6    C7     sing Y N 169 
RKF C6    C5     sing Y N 170 
RKF C32   C29    sing Y N 171 
RKF C7    C8     sing Y N 172 
RKF C30   N9     doub Y N 173 
RKF C4    C5     doub Y N 174 
RKF C4    C3     sing Y N 175 
RKF C5    C1     sing Y N 176 
RKF C34   C35    doub Y N 177 
RKF C3    C2     doub Y N 178 
RKF C8    C9     doub Y N 179 
RKF C8    C10    sing Y N 180 
RKF C29   N9     sing Y N 181 
RKF C29   C36    doub Y N 182 
RKF N9    RU     sing N N 183 
RKF C9    C11    sing Y N 184 
RKF C1    C10    sing Y N 185 
RKF C1    N2     doub Y N 186 
RKF C10   N1     doub Y N 187 
RKF C2    N2     sing Y N 188 
RKF N2    RU     sing N N 189 
RKF C35   C36    sing Y N 190 
RKF C35   N11    sing Y N 191 
RKF C36   N12    sing Y N 192 
RKF C11   C12    doub Y N 193 
RKF N1    C12    sing Y N 194 
RKF N1    RU     sing N N 195 
RKF RU    N12    sing N N 196 
RKF RU    N8     sing N N 197 
RKF RU    N5     sing N N 198 
RKF N11   C37    doub Y N 199 
RKF N12   C38    doub Y N 200 
RKF C28   N8     doub Y N 201 
RKF C28   C27    sing Y N 202 
RKF N8    C26    sing Y N 203 
RKF C37   C38    sing Y N 204 
RKF C27   N7     doub Y N 205 
RKF N5    C20    doub Y N 206 
RKF N5    C19    sing Y N 207 
RKF C20   C21    sing Y N 208 
RKF C26   C19    doub Y N 209 
RKF C26   C25    sing Y N 210 
RKF C19   C22    sing Y N 211 
RKF N7    C25    sing Y N 212 
RKF C25   C24    doub Y N 213 
RKF C21   N6     doub Y N 214 
RKF C22   N6     sing Y N 215 
RKF C22   C23    doub Y N 216 
RKF C24   C23    sing Y N 217 
RKF C14   H1     sing N N 218 
RKF C9    H2     sing N N 219 
RKF C11   H3     sing N N 220 
RKF C12   H4     sing N N 221 
RKF C16   H5     sing N N 222 
RKF C4    H6     sing N N 223 
RKF C3    H7     sing N N 224 
RKF C2    H8     sing N N 225 
RKF C38   H9     sing N N 226 
RKF C20   H10    sing N N 227 
RKF C21   H11    sing N N 228 
RKF C23   H12    sing N N 229 
RKF C24   H13    sing N N 230 
RKF C27   H14    sing N N 231 
RKF C28   H15    sing N N 232 
RKF C30   H16    sing N N 233 
RKF C31   H17    sing N N 234 
RKF C33   H18    sing N N 235 
RKF C34   H19    sing N N 236 
RKF C37   H20    sing N N 237 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
4MS5 'double helix'        
4MS5 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 A DG 10 8_555 1.021  1.416  -0.178 6.232   19.319 -72.975 1  A_DC1:DG10_A A 1 ? A 10 ? ?  ? 
1 A DC 1 1_555 A DG 10 1_555 1.021  1.416  -0.178 6.232   19.318 -72.975 2  A_DC1:DG10_A A 1 ? A 10 ? ?  ? 
1 A DC 2 1_555 A DG 9  8_555 -0.092 -0.086 0.255  -7.347  3.119  3.776   3  A_DC2:DG9_A  A 2 ? A 9  ? 19 1 
1 A DG 3 1_555 A DC 8  8_555 -0.044 0.050  0.143  22.541  -6.009 0.615   4  A_DG3:DC8_A  A 3 ? A 8  ? 19 1 
1 A DG 4 1_555 A DC 7  8_555 -0.214 -0.148 0.274  -4.529  2.374  -2.786  5  A_DG4:DC7_A  A 4 ? A 7  ? 19 1 
1 A DA 5 1_555 A DT 6  8_555 -0.401 -0.408 0.515  3.140   -4.623 5.233   6  A_DA5:DT6_A  A 5 ? A 6  ? 20 1 
1 A DT 6 1_555 A DA 5  8_555 0.401  -0.408 0.515  -3.140  -4.623 5.233   7  A_DT6:DA5_A  A 6 ? A 5  ? 20 1 
1 A DC 7 1_555 A DG 4  8_555 0.214  -0.148 0.274  4.529   2.374  -2.786  8  A_DC7:DG4_A  A 7 ? A 4  ? 19 1 
1 A DC 8 1_555 A DG 3  8_555 0.044  0.050  0.143  -22.541 -6.009 0.615   9  A_DC8:DG3_A  A 8 ? A 3  ? 19 1 
1 A DG 9 1_555 A DC 2  8_555 0.092  -0.086 0.255  7.347   3.119  3.776   10 A_DG9:DC2_A  A 9 ? A 2  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 2 1_555 A DG 9 8_555 A DG 3 1_555 A DC 8 8_555 -0.315 1.671  2.799 3.058  4.785  23.589 2.616  1.621  3.009 11.492 -7.344  
24.254 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DG 3 1_555 A DC 8 8_555 A DG 4 1_555 A DC 7 8_555 -0.007 0.601  5.153 -5.302 48.087 14.245 -5.552 -0.681 2.075 74.120 8.172   
50.310 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DG 4 1_555 A DC 7 8_555 A DA 5 1_555 A DT 6 8_555 -0.732 -0.016 3.225 -7.543 10.184 31.362 -1.701 0.021  3.156 17.949 13.294  
33.766 3 AA_DG4DA5:DT6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DA 5 1_555 A DT 6 8_555 A DT 6 1_555 A DA 5 8_555 0.000  -0.394 3.579 0.000  3.796  34.850 -1.274 0.000  3.518 6.315  0.000   
35.050 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DT 6 1_555 A DA 5 8_555 A DC 7 1_555 A DG 4 8_555 0.732  -0.016 3.225 7.543  10.184 31.362 -1.701 -0.021 3.156 17.949 -13.294 
33.766 5 AA_DT6DC7:DG4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DC 7 1_555 A DG 4 8_555 A DC 8 1_555 A DG 3 8_555 0.007  0.601  5.153 5.302  48.087 14.245 -5.552 0.681  2.075 74.120 -8.172  
50.310 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DC 8 1_555 A DG 3 8_555 A DG 9 1_555 A DC 2 8_555 0.315  1.671  2.799 -3.058 4.785  23.589 2.616  -1.621 3.009 11.492 7.344   
24.254 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'BARIUM ION' BA  
3 
"(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
RKF 
4 water HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3QRN 
_pdbx_initial_refinement_model.details          'PDB ENTRY 3QRN' 
#