HEADER SPLICING 18-SEP-13 4MSX TITLE CRYSTAL STRUCTURE OF AN ESSENTIAL YEAST SPLICING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR SAD1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SNRNP ASSEMBLY-DEFECTIVE PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SAD1, YFR005C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DEUBIQUITINASE, ZINC FINGER UBIQUITIN BINDING PROTEIN, ZNF-UBP, KEYWDS 2 UBIQUITIN SPECIFIC PROTEASE, USP, PRE-MRNA SPLICING, SPLICEOSOME KEYWDS 3 ASSEMBLY, PSEUDO-DEUBIQUITINASE, NUCLEAR, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR H.HADJIVASSILIOU,C.GUTHRIE,O.S.ROSENBERG REVDAT 3 28-FEB-24 4MSX 1 REMARK SEQADV LINK REVDAT 2 07-MAY-14 4MSX 1 JRNL REVDAT 1 16-APR-14 4MSX 0 JRNL AUTH H.HADJIVASSILIOU,O.S.ROSENBERG,C.GUTHRIE JRNL TITL THE CRYSTAL STRUCTURE OF S. CEREVISIAE SAD1, A CATALYTICALLY JRNL TITL 2 INACTIVE DEUBIQUITINASE THAT IS BROADLY REQUIRED FOR JRNL TITL 3 PRE-MRNA SPLICING. JRNL REF RNA V. 20 656 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 24681967 JRNL DOI 10.1261/RNA.042838.113 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 70394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8423 - 4.5054 0.97 5068 150 0.1746 0.1975 REMARK 3 2 4.5054 - 3.5767 1.00 5003 146 0.1487 0.1766 REMARK 3 3 3.5767 - 3.1247 1.00 4945 144 0.1937 0.2359 REMARK 3 4 3.1247 - 2.8391 1.00 4929 144 0.1811 0.2414 REMARK 3 5 2.8391 - 2.6356 1.00 4898 143 0.1745 0.2300 REMARK 3 6 2.6356 - 2.4802 1.00 4877 143 0.1760 0.1993 REMARK 3 7 2.4802 - 2.3560 1.00 4886 142 0.1761 0.2182 REMARK 3 8 2.3560 - 2.2535 1.00 4859 142 0.1879 0.2318 REMARK 3 9 2.2535 - 2.1667 1.00 4850 141 0.1959 0.2581 REMARK 3 10 2.1667 - 2.0920 1.00 4864 142 0.2049 0.2330 REMARK 3 11 2.0920 - 2.0266 1.00 4806 140 0.2265 0.2643 REMARK 3 12 2.0266 - 1.9686 0.99 4821 140 0.2578 0.2995 REMARK 3 13 1.9686 - 1.9168 0.99 4807 140 0.3191 0.3636 REMARK 3 14 1.9168 - 1.8700 0.99 4785 139 0.3970 0.3967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.92680 REMARK 3 B22 (A**2) : -5.92680 REMARK 3 B33 (A**2) : 11.85360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3476 REMARK 3 ANGLE : 1.605 4738 REMARK 3 CHIRALITY : 0.126 534 REMARK 3 PLANARITY : 0.009 599 REMARK 3 DIHEDRAL : 13.007 1305 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11; 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159; 1.2146 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111); REMARK 200 DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 98.511 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 10.5000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.94500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG4000, 0.1 M SODIUM ACETATE, 0.1 REMARK 280 M MAGNESIUM ACETATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.36850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.65750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.05275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.65750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.68425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.65750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.05275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.65750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.68425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.36850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 812 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 GLN A 16 REMARK 465 GLU A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 LYS A 20 REMARK 465 LYS A 21 REMARK 465 ILE A 22 REMARK 465 LYS A 23 REMARK 465 SER A 24 REMARK 465 GLN A 25 REMARK 465 GLU A 26 REMARK 465 PRO A 27 REMARK 465 ASN A 28 REMARK 465 VAL A 267 REMARK 465 GLU A 268 REMARK 465 ASN A 269 REMARK 465 LYS A 270 REMARK 465 PRO A 271 REMARK 465 GLU A 272 REMARK 465 ALA A 273 REMARK 465 SER A 323 REMARK 465 ARG A 324 REMARK 465 SER A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 THR A 328 REMARK 465 SER A 329 REMARK 465 LYS A 389 REMARK 465 GLN A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 THR A 393 REMARK 465 ASP A 394 REMARK 465 GLY A 395 REMARK 465 ASN A 396 REMARK 465 ALA A 397 REMARK 465 PHE A 398 REMARK 465 ASN A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 359 OE1 GLU A 438 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 734 O HOH A 735 8665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 73 -16.55 79.14 REMARK 500 TYR A 122 81.87 -157.68 REMARK 500 PHE A 149 58.96 -109.91 REMARK 500 HIS A 208 36.65 -81.68 REMARK 500 ASN A 226 28.50 -143.24 REMARK 500 LYS A 319 -48.09 -29.47 REMARK 500 ASN A 351 45.08 -95.91 REMARK 500 HIS A 354 63.73 39.78 REMARK 500 SER A 367 -153.62 -118.38 REMARK 500 LEU A 373 60.34 37.09 REMARK 500 HIS A 374 -1.44 73.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 60 SG REMARK 620 2 CYS A 63 SG 112.2 REMARK 620 3 HIS A 79 NE2 110.3 105.9 REMARK 620 4 HIS A 85 ND1 111.6 110.5 105.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 DBREF 4MSX A 1 448 UNP P43589 SAD1_YEAST 1 448 SEQADV 4MSX MET A -33 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -32 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -31 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -30 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -29 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -28 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -27 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -26 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -25 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -24 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -23 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -22 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -21 UNP P43589 EXPRESSION TAG SEQADV 4MSX LEU A -20 UNP P43589 EXPRESSION TAG SEQADV 4MSX VAL A -19 UNP P43589 EXPRESSION TAG SEQADV 4MSX PRO A -18 UNP P43589 EXPRESSION TAG SEQADV 4MSX ARG A -17 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -16 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -15 UNP P43589 EXPRESSION TAG SEQADV 4MSX HIS A -14 UNP P43589 EXPRESSION TAG SEQADV 4MSX MET A -13 UNP P43589 EXPRESSION TAG SEQADV 4MSX ALA A -12 UNP P43589 EXPRESSION TAG SEQADV 4MSX SER A -11 UNP P43589 EXPRESSION TAG SEQADV 4MSX MET A -10 UNP P43589 EXPRESSION TAG SEQADV 4MSX THR A -9 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -8 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -7 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLN A -6 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLN A -5 UNP P43589 EXPRESSION TAG SEQADV 4MSX MET A -4 UNP P43589 EXPRESSION TAG SEQADV 4MSX GLY A -3 UNP P43589 EXPRESSION TAG SEQADV 4MSX ARG A -2 UNP P43589 EXPRESSION TAG SEQADV 4MSX ASP A -1 UNP P43589 EXPRESSION TAG SEQADV 4MSX PRO A 0 UNP P43589 EXPRESSION TAG SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 482 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 482 GLY GLN GLN MET GLY ARG ASP PRO MET GLU VAL ASP ASN SEQRES 4 A 482 LYS ARG ARG HIS SER GLU ASP GLU LEU LYS GLN GLU ALA SEQRES 5 A 482 VAL LYS LYS ILE LYS SER GLN GLU PRO ASN TYR ALA TYR SEQRES 6 A 482 LEU GLU THR VAL VAL ARG GLU LYS LEU ASP PHE ASP SER SEQRES 7 A 482 GLU LYS ILE CYS CYS ILE THR LEU SER PRO LEU ASN VAL SEQRES 8 A 482 TYR CYS CYS LEU VAL CYS GLY HIS TYR TYR GLN GLY ARG SEQRES 9 A 482 HIS GLU LYS SER PRO ALA PHE ILE HIS SER ILE ASP GLU SEQRES 10 A 482 ASN HIS HIS VAL PHE LEU ASN LEU THR SER LEU LYS PHE SEQRES 11 A 482 TYR MET LEU PRO GLN ASN VAL GLN ILE LEU HIS ASP GLY SEQRES 12 A 482 GLU VAL GLN LEU LEU ASN SER ILE LYS PHE ALA ALA TYR SEQRES 13 A 482 PRO THR TYR CYS PRO LYS ASP LEU GLU ASP PHE PRO ARG SEQRES 14 A 482 GLN CYS PHE ASP LEU SER ASN ARG THR TYR LEU ASN GLY SEQRES 15 A 482 PHE ILE GLY PHE THR ASN ALA ALA THR TYR ASP TYR ALA SEQRES 16 A 482 HIS SER VAL LEU LEU LEU ILE SER HIS MET VAL PRO VAL SEQRES 17 A 482 ARG ASP HIS PHE LEU LEU ASN HIS PHE ASP ASN GLN GLY SEQRES 18 A 482 GLU PHE ILE LYS ARG LEU SER ILE CYS VAL LYS LYS ILE SEQRES 19 A 482 TRP SER PRO LYS LEU PHE LYS HIS HIS LEU SER VAL ASP SEQRES 20 A 482 ASP PHE VAL SER TYR LEU LYS VAL ARG GLU GLY LEU ASN SEQRES 21 A 482 LEU ASN PRO ILE ASP PRO ARG LEU PHE LEU LEU TRP LEU SEQRES 22 A 482 PHE ASN LYS ILE CYS SER SER SER ASN ASP LEU LYS SER SEQRES 23 A 482 ILE LEU ASN HIS SER CYS LYS GLY LYS VAL LYS ILE ALA SEQRES 24 A 482 LYS VAL GLU ASN LYS PRO GLU ALA SER GLU SER VAL THR SEQRES 25 A 482 GLY LYS VAL ILE VAL LYS PRO PHE TRP VAL LEU THR LEU SEQRES 26 A 482 ASP LEU PRO GLU PHE SER PRO PHE GLU ASP GLY ASN SER SEQRES 27 A 482 VAL ASP ASP LEU PRO GLN ILE ASN ILE THR LYS LEU LEU SEQRES 28 A 482 THR LYS PHE THR LYS SER ARG SER SER SER THR SER THR SEQRES 29 A 482 VAL PHE GLU LEU THR ARG LEU PRO GLN PHE LEU ILE PHE SEQRES 30 A 482 HIS PHE ASN ARG PHE ASP ARG ASN SER ASP HIS PRO VAL SEQRES 31 A 482 LYS ASN ARG ASN GLN THR LEU VAL GLU PHE SER SER GLU SEQRES 32 A 482 LEU GLU ILE LEU HIS VAL LYS TYR ARG LEU LYS ALA ASN SEQRES 33 A 482 VAL VAL HIS VAL VAL ILE LYS GLN PRO SER THR ASP GLY SEQRES 34 A 482 ASN ALA PHE ASN GLY ASP GLU LYS SER HIS TRP ILE THR SEQRES 35 A 482 GLN LEU TYR ASP ASN LYS SER GLU LYS TRP ILE GLU ILE SEQRES 36 A 482 ASP GLY ILE ASN THR THR GLU ARG GLU ALA GLU LEU LEU SEQRES 37 A 482 PHE LEU LYS GLU THR PHE ILE GLN VAL TRP GLU LYS GLN SEQRES 38 A 482 GLU HET ZN A 501 1 HET ACT A 502 7 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *321(H2 O) HELIX 1 1 TYR A 29 VAL A 35 5 7 HELIX 2 2 VAL A 36 LEU A 40 5 5 HELIX 3 3 SER A 74 GLU A 83 1 10 HELIX 4 4 HIS A 107 GLU A 110 5 4 HELIX 5 5 VAL A 111 TYR A 122 1 12 HELIX 6 6 CYS A 126 ASP A 132 1 7 HELIX 7 7 ASN A 154 HIS A 170 1 17 HELIX 8 8 MET A 171 ASN A 181 1 11 HELIX 9 9 GLY A 187 TRP A 201 1 15 HELIX 10 10 VAL A 212 GLU A 223 1 12 HELIX 11 11 ASP A 231 SER A 247 1 17 HELIX 12 12 SER A 247 LYS A 259 1 13 HELIX 13 13 SER A 304 LEU A 308 5 5 HELIX 14 14 ILE A 313 LEU A 317 1 5 HELIX 15 15 LEU A 317 LYS A 322 1 6 HELIX 16 16 GLU A 430 LYS A 437 5 8 SHEET 1 A 5 TYR A 66 GLN A 68 0 SHEET 2 A 5 VAL A 57 CYS A 60 -1 N TYR A 58 O TYR A 67 SHEET 3 A 5 VAL A 87 ASN A 90 -1 O LEU A 89 N CYS A 59 SHEET 4 A 5 PHE A 96 MET A 98 -1 O TYR A 97 N PHE A 88 SHEET 5 A 5 VAL A 103 GLN A 104 -1 O VAL A 103 N MET A 98 SHEET 1 B 2 GLN A 136 PHE A 138 0 SHEET 2 B 2 THR A 144 LEU A 146 -1 O TYR A 145 N CYS A 137 SHEET 1 C 2 GLY A 151 PHE A 152 0 SHEET 2 C 2 HIS A 209 LEU A 210 1 O LEU A 210 N GLY A 151 SHEET 1 D 3 VAL A 281 PHE A 286 0 SHEET 2 D 3 GLY A 260 ALA A 265 -1 N VAL A 262 O LYS A 284 SHEET 3 D 3 VAL A 331 ARG A 336 -1 O GLU A 333 N LYS A 263 SHEET 1 E 5 LEU A 289 LEU A 291 0 SHEET 2 E 5 PHE A 340 PHE A 345 1 O ILE A 342 N LEU A 289 SHEET 3 E 5 GLU A 438 LYS A 446 -1 O TRP A 444 N LEU A 341 SHEET 4 E 5 VAL A 375 ILE A 388 -1 N VAL A 383 O ILE A 441 SHEET 5 E 5 GLU A 369 ILE A 372 -1 N ILE A 372 O VAL A 375 SHEET 1 F 7 LEU A 289 LEU A 291 0 SHEET 2 F 7 PHE A 340 PHE A 345 1 O ILE A 342 N LEU A 289 SHEET 3 F 7 GLU A 438 LYS A 446 -1 O TRP A 444 N LEU A 341 SHEET 4 F 7 VAL A 375 ILE A 388 -1 N VAL A 383 O ILE A 441 SHEET 5 F 7 LYS A 403 ASP A 412 -1 O HIS A 405 N VAL A 386 SHEET 6 F 7 LYS A 417 ASP A 422 -1 O ILE A 421 N THR A 408 SHEET 7 F 7 ASN A 425 ARG A 429 -1 O THR A 427 N GLU A 420 SHEET 1 G 2 GLN A 310 ASN A 312 0 SHEET 2 G 2 LEU A 363 GLU A 365 1 O GLU A 365 N ILE A 311 LINK SG CYS A 60 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 63 ZN ZN A 501 1555 1555 2.40 LINK NE2 HIS A 79 ZN ZN A 501 1555 1555 2.04 LINK ND1 HIS A 85 ZN ZN A 501 1555 1555 2.23 CISPEP 1 GLY A 69 ARG A 70 0 -2.19 CISPEP 2 LEU A 99 PRO A 100 0 9.65 CISPEP 3 PHE A 133 PRO A 134 0 -3.31 CISPEP 4 ASN A 228 PRO A 229 0 12.48 SITE 1 AC1 4 CYS A 60 CYS A 63 HIS A 79 HIS A 85 SITE 1 AC2 6 ASN A 346 ARG A 347 ASP A 349 ASN A 360 SITE 2 AC2 6 HOH A 777 HOH A 909 CRYST1 139.315 139.315 86.737 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011529 0.00000