HEADER LIGASE 23-SEP-13 4MV1 TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN TITLE 2 COMPLEX WITH ADP AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 5 GENE: ACCC, HI_0972; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,T.S.CHAMPION,R.J.BONNOT, AUTHOR 2 G.L.WALDROP REVDAT 4 20-SEP-23 4MV1 1 REMARK SEQADV REVDAT 3 15-NOV-17 4MV1 1 REMARK REVDAT 2 01-JUL-15 4MV1 1 JRNL REVDAT 1 14-JAN-15 4MV1 0 JRNL AUTH T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,R.BONNOT,G.L.WALDROP JRNL TITL STRUCTURAL ANALYSIS OF SUBSTRATE, REACTION INTERMEDIATE, AND JRNL TITL 2 PRODUCT BINDING IN HAEMOPHILUS INFLUENZAE BIOTIN JRNL TITL 3 CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 54 3860 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26020841 JRNL DOI 10.1021/ACS.BIOCHEM.5B00340 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 32942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1730 - 4.3683 0.96 2584 130 0.1391 0.1420 REMARK 3 2 4.3683 - 3.4687 0.99 2638 137 0.1377 0.1599 REMARK 3 3 3.4687 - 3.0307 0.99 2606 139 0.1701 0.1953 REMARK 3 4 3.0307 - 2.7538 0.99 2632 137 0.1704 0.2389 REMARK 3 5 2.7538 - 2.5565 0.99 2615 142 0.1653 0.2163 REMARK 3 6 2.5565 - 2.4058 0.99 2628 135 0.1687 0.2150 REMARK 3 7 2.4058 - 2.2854 0.99 2607 136 0.1712 0.2389 REMARK 3 8 2.2854 - 2.1859 0.99 2588 132 0.1874 0.2622 REMARK 3 9 2.1859 - 2.1018 0.99 2605 135 0.1959 0.2814 REMARK 3 10 2.1018 - 2.0293 0.99 2598 131 0.2168 0.2700 REMARK 3 11 2.0293 - 1.9658 0.99 2653 130 0.2397 0.2754 REMARK 3 12 1.9658 - 1.9100 0.98 2573 131 0.2900 0.3586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3427 REMARK 3 ANGLE : 1.285 4635 REMARK 3 CHIRALITY : 0.068 521 REMARK 3 PLANARITY : 0.005 600 REMARK 3 DIHEDRAL : 15.181 1292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:116) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8962 17.3020 -22.4094 REMARK 3 T TENSOR REMARK 3 T11: 0.2406 T22: 0.2959 REMARK 3 T33: 0.3733 T12: 0.0703 REMARK 3 T13: -0.0852 T23: -0.1488 REMARK 3 L TENSOR REMARK 3 L11: 5.0194 L22: 3.2318 REMARK 3 L33: 2.4054 L12: -0.9097 REMARK 3 L13: 0.3521 L23: 0.2750 REMARK 3 S TENSOR REMARK 3 S11: 0.1931 S12: 0.5178 S13: -0.6564 REMARK 3 S21: -0.0526 S22: 0.0913 S23: -0.5901 REMARK 3 S31: 0.1480 S32: 0.4551 S33: -0.0958 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 117:207) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6591 -6.0736 -7.4841 REMARK 3 T TENSOR REMARK 3 T11: 0.5361 T22: 0.5966 REMARK 3 T33: 0.6882 T12: -0.0107 REMARK 3 T13: -0.1795 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 6.4178 L22: 5.9629 REMARK 3 L33: 1.6748 L12: 2.4432 REMARK 3 L13: 0.0077 L23: -0.6707 REMARK 3 S TENSOR REMARK 3 S11: 0.3564 S12: 1.1115 S13: -0.5645 REMARK 3 S21: 0.2596 S22: -0.1819 S23: 0.1345 REMARK 3 S31: 0.4166 S32: -0.0971 S33: -0.2168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 208:331) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8485 18.8188 -5.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.4838 T22: 0.2755 REMARK 3 T33: 0.2467 T12: 0.0008 REMARK 3 T13: -0.0208 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 3.6506 L22: 3.1186 REMARK 3 L33: 1.7736 L12: -0.7167 REMARK 3 L13: 0.6372 L23: -0.4633 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.6259 S13: -0.6201 REMARK 3 S21: 0.8230 S22: 0.1612 S23: 0.2086 REMARK 3 S31: 0.1203 S32: -0.1444 S33: -0.1044 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 332:444) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1059 25.9546 -24.1018 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2111 REMARK 3 T33: 0.3247 T12: -0.0153 REMARK 3 T13: -0.0466 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 3.3488 L22: 3.6718 REMARK 3 L33: 2.0892 L12: -1.0937 REMARK 3 L13: 0.5697 L23: 0.2336 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: 0.3433 S13: -0.4603 REMARK 3 S21: -0.1112 S22: -0.0459 S23: 0.7296 REMARK 3 S31: 0.0023 S32: -0.1382 S33: -0.0071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED TO THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SINGLE REMARK 200 CRYSTAL SI (311) SIDE BOUNCE REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 42.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE (PH 6.0), 20% REMARK 280 PEGMME 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.34733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.69467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.34733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.69467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -42.86650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.24696 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 769 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 GLU A 188 REMARK 465 ALA A 189 REMARK 465 LYS A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 PHE A 193 REMARK 465 ASN A 194 REMARK 465 ASN A 195 REMARK 465 GLY A 445 REMARK 465 MET A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 184 CG SD CE REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 186 O ASP A 196 1.26 REMARK 500 HH22 ARG A 173 OE2 GLU A 205 1.50 REMARK 500 HZ3 LYS A 186 OD1 ASP A 196 1.54 REMARK 500 NZ LYS A 186 O ASP A 196 1.70 REMARK 500 O HOH A 789 O HOH A 790 2.08 REMARK 500 O ALA A 177 OG SER A 181 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -166.69 -163.20 REMARK 500 SER A 59 -84.22 -130.53 REMARK 500 PHE A 84 -118.18 42.04 REMARK 500 ASP A 135 70.89 48.05 REMARK 500 SER A 139 -155.34 -91.08 REMARK 500 ALA A 226 -145.93 53.14 REMARK 500 ASN A 281 48.13 34.98 REMARK 500 TYR A 381 -154.02 -125.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE WITH ADPCF2P REMARK 900 RELATED ID: 4MV3 RELATED DB: PDB REMARK 900 RELATED ID: 4MV4 RELATED DB: PDB REMARK 900 RELATED ID: 4MV6 RELATED DB: PDB REMARK 900 RELATED ID: 4MV7 RELATED DB: PDB REMARK 900 RELATED ID: 4MV8 RELATED DB: PDB REMARK 900 RELATED ID: 4MV9 RELATED DB: PDB DBREF 4MV1 A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 4MV1 MET A -19 UNP P43873 EXPRESSION TAG SEQADV 4MV1 GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 4MV1 SER A -17 UNP P43873 EXPRESSION TAG SEQADV 4MV1 SER A -16 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 4MV1 SER A -9 UNP P43873 EXPRESSION TAG SEQADV 4MV1 SER A -8 UNP P43873 EXPRESSION TAG SEQADV 4MV1 GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 4MV1 LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 4MV1 VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 4MV1 PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 4MV1 ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 4MV1 GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 4MV1 SER A -1 UNP P43873 EXPRESSION TAG SEQADV 4MV1 HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET PO4 A 501 5 HET ADP A 502 39 HET EDO A 503 10 HET EDO A 504 10 HETNAM PO4 PHOSPHATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *192(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 THR A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 SER A 174 ASP A 176 5 3 HELIX 11 11 ALA A 177 ALA A 187 1 11 HELIX 12 12 THR A 249 GLY A 268 1 20 HELIX 13 13 GLU A 296 GLY A 305 1 10 HELIX 14 14 ASP A 307 ALA A 317 1 11 HELIX 15 15 LYS A 324 ILE A 328 5 5 HELIX 16 16 THR A 394 THR A 409 1 16 HELIX 17 17 ASN A 417 GLU A 426 1 10 HELIX 18 18 ASP A 427 GLY A 433 1 7 HELIX 19 19 HIS A 438 LEU A 444 1 7 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N VAL A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 B 3 ARG A 170 VAL A 172 0 SHEET 2 B 3 ILE A 156 ALA A 160 -1 N ILE A 156 O VAL A 172 SHEET 3 B 3 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 GLY A 271 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 C 8 ARG A 208 ALA A 216 -1 N ALA A 216 O GLY A 271 SHEET 4 C 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 C 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 C 8 MET A 384 GLY A 392 -1 O ILE A 385 N ILE A 339 SHEET 8 C 8 VAL A 365 SER A 369 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 E 2 HIS A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 CISPEP 1 TYR A 154 PRO A 155 0 2.31 CISPEP 2 ALA A 243 PRO A 244 0 -8.22 SITE 1 AC1 9 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 2 AC1 9 GLU A 296 ARG A 338 HOH A 772 HOH A 773 SITE 3 AC1 9 HOH A 789 SITE 1 AC2 9 LYS A 116 LYS A 159 GLU A 201 LYS A 202 SITE 2 AC2 9 TYR A 203 LEU A 204 HIS A 236 LEU A 278 SITE 3 AC2 9 ILE A 437 SITE 1 AC3 1 LEU A 2 SITE 1 AC4 3 GLU A 175 ASP A 176 ASN A 436 CRYST1 85.733 85.733 103.042 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011664 0.006734 0.000000 0.00000 SCALE2 0.000000 0.013469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009705 0.00000