HEADER LIGASE 23-SEP-13 4MV6 TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN TITLE 2 COMPLEX WITH PHOSPHONOACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 5 GENE: ACCC, HI_0972; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,T.S.CHAMPION,R.J.BONNOT, AUTHOR 2 G.L.WALDROP REVDAT 4 20-SEP-23 4MV6 1 REMARK SEQADV REVDAT 3 15-NOV-17 4MV6 1 REMARK REVDAT 2 01-JUL-15 4MV6 1 JRNL REVDAT 1 14-JAN-15 4MV6 0 JRNL AUTH T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,R.BONNOT,G.L.WALDROP JRNL TITL STRUCTURAL ANALYSIS OF SUBSTRATE, REACTION INTERMEDIATE, AND JRNL TITL 2 PRODUCT BINDING IN HAEMOPHILUS INFLUENZAE BIOTIN JRNL TITL 3 CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 54 3860 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26020841 JRNL DOI 10.1021/ACS.BIOCHEM.5B00340 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 40727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2200 - 4.2635 0.94 2703 137 0.1590 0.1733 REMARK 3 2 4.2635 - 3.3845 0.95 2700 141 0.1574 0.1912 REMARK 3 3 3.3845 - 2.9568 0.98 2784 145 0.1785 0.1969 REMARK 3 4 2.9568 - 2.6865 0.97 2753 145 0.1733 0.1923 REMARK 3 5 2.6865 - 2.4940 0.98 2765 146 0.1666 0.2159 REMARK 3 6 2.4940 - 2.3469 0.99 2789 141 0.1743 0.2012 REMARK 3 7 2.3469 - 2.2294 0.99 2807 147 0.1752 0.2116 REMARK 3 8 2.2294 - 2.1324 0.98 2772 147 0.1794 0.2552 REMARK 3 9 2.1324 - 2.0503 0.98 2763 134 0.1872 0.2335 REMARK 3 10 2.0503 - 1.9795 0.99 2793 141 0.1994 0.2507 REMARK 3 11 1.9795 - 1.9176 0.99 2784 144 0.2095 0.2347 REMARK 3 12 1.9176 - 1.8628 0.99 2769 141 0.2245 0.2580 REMARK 3 13 1.8628 - 1.8138 0.99 2831 144 0.2406 0.2721 REMARK 3 14 1.8138 - 1.7700 0.97 2724 137 0.2654 0.2709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3297 REMARK 3 ANGLE : 0.998 4459 REMARK 3 CHIRALITY : 0.063 500 REMARK 3 PLANARITY : 0.005 585 REMARK 3 DIHEDRAL : 14.336 1242 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6606 4.7074 -7.2414 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.3046 REMARK 3 T33: 0.3364 T12: 0.0631 REMARK 3 T13: 0.0827 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 2.9813 L22: 2.5967 REMARK 3 L33: 2.0234 L12: -1.0234 REMARK 3 L13: -0.1364 L23: -0.4329 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.1958 S13: 0.0053 REMARK 3 S21: 0.2136 S22: 0.1986 S23: 0.6688 REMARK 3 S31: -0.2694 S32: -0.3980 S33: -0.1971 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3168 -28.2998 -23.1061 REMARK 3 T TENSOR REMARK 3 T11: 0.8809 T22: 0.6140 REMARK 3 T33: 1.0306 T12: -0.0433 REMARK 3 T13: -0.3515 T23: 0.1121 REMARK 3 L TENSOR REMARK 3 L11: 5.2096 L22: 1.5204 REMARK 3 L33: 1.3002 L12: -0.2925 REMARK 3 L13: -2.4617 L23: 0.3590 REMARK 3 S TENSOR REMARK 3 S11: -0.8833 S12: -0.6796 S13: -0.6455 REMARK 3 S21: 0.2854 S22: 0.5657 S23: 0.1898 REMARK 3 S31: 0.3901 S32: -0.2733 S33: 0.2808 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0911 -8.0750 -24.2818 REMARK 3 T TENSOR REMARK 3 T11: 0.3574 T22: 0.3388 REMARK 3 T33: 0.3490 T12: -0.0320 REMARK 3 T13: -0.1363 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 3.5885 L22: 2.4729 REMARK 3 L33: 1.6808 L12: -0.5961 REMARK 3 L13: 0.8745 L23: -0.1315 REMARK 3 S TENSOR REMARK 3 S11: 0.2753 S12: 0.6028 S13: -0.7083 REMARK 3 S21: -0.5160 S22: 0.0319 S23: 0.5400 REMARK 3 S31: 0.2384 S32: -0.0145 S33: -0.0500 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5480 -13.2141 -6.2937 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.2087 REMARK 3 T33: 0.3394 T12: -0.0170 REMARK 3 T13: -0.0017 T23: 0.0898 REMARK 3 L TENSOR REMARK 3 L11: 3.6780 L22: 1.7959 REMARK 3 L33: 1.9437 L12: -0.4619 REMARK 3 L13: -0.0253 L23: -0.2897 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.3051 S13: -0.8579 REMARK 3 S21: 0.1389 S22: 0.1082 S23: 0.1845 REMARK 3 S31: 0.1191 S32: 0.1216 S33: 0.0082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED TO THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL SI (111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 42.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.21400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.42800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.21400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.42800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.78200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 EDO A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 VAL A 138 REMARK 465 SER A 139 REMARK 465 ASN A 140 REMARK 465 ASP A 141 REMARK 465 ILE A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ASN A 145 REMARK 465 LYS A 159 REMARK 465 ALA A 160 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 MET A 169 REMARK 465 GLU A 188 REMARK 465 ALA A 189 REMARK 465 LYS A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 PHE A 193 REMARK 465 ASN A 194 REMARK 465 ASN A 195 REMARK 465 ASP A 196 REMARK 465 MET A 197 REMARK 465 GLY A 445 REMARK 465 MET A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ILE A 158 CG1 CG2 CD1 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ILE A 182 CG1 CG2 CD1 REMARK 470 VAL A 198 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 382 O HOH A 624 2.19 REMARK 500 O HOH A 703 O HOH A 751 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -166.60 -166.60 REMARK 500 SER A 59 -80.22 -132.44 REMARK 500 PHE A 84 -113.90 40.67 REMARK 500 LYS A 116 -37.52 -36.36 REMARK 500 GLU A 201 161.71 175.08 REMARK 500 LEU A 225 63.87 -116.05 REMARK 500 ALA A 226 -155.32 54.44 REMARK 500 ASN A 281 52.47 33.64 REMARK 500 GLU A 288 148.01 -170.07 REMARK 500 TYR A 381 -153.54 -122.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCT A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE WITH ADPCF2P REMARK 900 RELATED ID: 4MV1 RELATED DB: PDB REMARK 900 RELATED ID: 4MV3 RELATED DB: PDB REMARK 900 RELATED ID: 4MV4 RELATED DB: PDB REMARK 900 RELATED ID: 4MV7 RELATED DB: PDB REMARK 900 RELATED ID: 4MV8 RELATED DB: PDB REMARK 900 RELATED ID: 4MV9 RELATED DB: PDB DBREF 4MV6 A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 4MV6 MET A -19 UNP P43873 EXPRESSION TAG SEQADV 4MV6 GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 4MV6 SER A -17 UNP P43873 EXPRESSION TAG SEQADV 4MV6 SER A -16 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 4MV6 SER A -9 UNP P43873 EXPRESSION TAG SEQADV 4MV6 SER A -8 UNP P43873 EXPRESSION TAG SEQADV 4MV6 GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 4MV6 LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 4MV6 VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 4MV6 PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 4MV6 ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 4MV6 GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 4MV6 SER A -1 UNP P43873 EXPRESSION TAG SEQADV 4MV6 HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET EDO A 501 10 HET EDO A 502 10 HET EDO A 503 10 HET PCT A 504 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM PCT PHOSPHONOACETAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 PCT C2 H6 N O4 P FORMUL 6 HOH *175(H2 O) HELIX 1 1 ARG A 10 LEU A 24 1 15 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 THR A 106 MET A 113 1 8 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 GLU A 147 GLY A 153 1 7 HELIX 10 10 ALA A 177 ALA A 187 1 11 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 GLU A 296 GLY A 305 1 10 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 ILE A 328 5 5 HELIX 15 15 THR A 394 THR A 409 1 16 HELIX 16 16 ASN A 417 GLU A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 LYS A 443 1 6 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N ILE A 7 O VAL A 29 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 B 8 GLU A 283 ASN A 290 0 SHEET 2 B 8 GLY A 271 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 B 8 ARG A 208 ALA A 216 -1 N VAL A 214 O GLY A 273 SHEET 4 B 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 B 8 GLN A 237 ALA A 243 -1 O GLU A 242 N ASP A 229 SHEET 6 B 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 B 8 MET A 384 GLY A 392 -1 O ILE A 385 N ILE A 339 SHEET 8 B 8 VAL A 365 ASP A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 C 2 GLY A 352 LYS A 353 0 SHEET 2 C 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 D 2 HIS A 356 HIS A 358 0 SHEET 2 D 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 CISPEP 1 TYR A 154 PRO A 155 0 2.72 CISPEP 2 ALA A 243 PRO A 244 0 -7.30 SITE 1 AC1 3 MET A 1 LEU A 2 ALA A 317 SITE 1 AC2 7 ALA A 341 PRO A 349 PRO A 351 VAL A 377 SITE 2 AC2 7 PRO A 378 PRO A 379 SER A 383 SITE 1 AC3 5 SER A 359 PRO A 360 GLY A 361 TRP A 367 SITE 2 AC3 5 HOH A 628 SITE 1 AC4 8 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 2 AC4 8 GLU A 296 ARG A 338 HOH A 654 HOH A 748 CRYST1 85.782 85.782 102.642 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011657 0.006730 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009743 0.00000