HEADER HYDROLASE 25-SEP-13 4MWT TITLE CRYSTAL STRUCTURE OF HUMAN PPCA (TRIGONAL CRYSTAL FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOSOMAL PROTECTIVE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARBOXYPEPTIDASE C, CARBOXYPEPTIDASE L, CATHEPSIN A, COMPND 5 PROTECTIVE PROTEIN CATHEPSIN A, PPCA, PROTECTIVE PROTEIN FOR BETA- COMPND 6 GALACTOSIDASE; COMPND 7 EC: 3.4.16.5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSA, PPGB; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI-FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: STABLE CELL LINE; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIB/V5-HIS-TOPO TA KEYWDS CATHEPSIN A, GLYCOPROTEIN, SERINE PROTEASE, CARBOXYPEPTIDASE, KEYWDS 2 PROTECTIVE PROTEIN, N-LINKED GLYCOSYLATION, PROTEOLYTICALLY KEYWDS 3 ACTIVATED FORM, LYSOSOMAL ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KOLLI,S.C.GARMAN REVDAT 4 29-JUL-20 4MWT 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 23-AUG-17 4MWT 1 REMARK REVDAT 2 15-APR-15 4MWT 1 JRNL REVDAT 1 12-MAR-14 4MWT 0 JRNL AUTH N.KOLLI,S.C.GARMAN JRNL TITL PROTEOLYTIC ACTIVATION OF HUMAN CATHEPSIN A. JRNL REF J.BIOL.CHEM. V. 289 11592 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24599961 JRNL DOI 10.1074/JBC.M113.524280 REMARK 2 REMARK 2 RESOLUTION. 3.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 9241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.323 REMARK 3 R VALUE (WORKING SET) : 0.323 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.966 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 153.587 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.751 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.701 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6873 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9354 ; 1.146 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 6.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;38.431 ;24.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;14.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 988 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5365 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 452 B 1 452 605 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 182 REMARK 3 RESIDUE RANGE : A 183 A 303 REMARK 3 RESIDUE RANGE : A 304 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0301 -26.5758 -6.3634 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.1154 REMARK 3 T33: 0.0426 T12: -0.0224 REMARK 3 T13: -0.0565 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.5283 L22: 0.9471 REMARK 3 L33: 0.6241 L12: -0.4361 REMARK 3 L13: -0.4927 L23: 0.2699 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.1108 S13: 0.0257 REMARK 3 S21: -0.1067 S22: 0.0012 S23: 0.0364 REMARK 3 S31: -0.0831 S32: -0.0983 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 182 REMARK 3 RESIDUE RANGE : B 183 B 303 REMARK 3 RESIDUE RANGE : B 304 B 452 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4834 -62.8614 -10.3275 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.0711 REMARK 3 T33: 0.0229 T12: 0.0357 REMARK 3 T13: 0.0490 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.2212 L22: 1.1240 REMARK 3 L33: 0.8569 L12: -0.4457 REMARK 3 L13: 0.0490 L23: 0.5418 REMARK 3 S TENSOR REMARK 3 S11: -0.2384 S12: -0.1357 S13: -0.0374 REMARK 3 S21: 0.0916 S22: 0.1648 S23: -0.0309 REMARK 3 S31: 0.2153 S32: 0.0612 S33: 0.0736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS CBF REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9724 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.1M AMMONIUM TARTRATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.51733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.51733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.25867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 289 REMARK 465 HIS A 290 REMARK 465 PHE A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 LYS A 296 REMARK 465 VAL A 297 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 SER B 289 REMARK 465 HIS B 290 REMARK 465 PHE B 291 REMARK 465 ARG B 292 REMARK 465 SER B 293 REMARK 465 GLY B 294 REMARK 465 ASP B 295 REMARK 465 LYS B 296 REMARK 465 VAL B 297 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 -79.43 -86.33 REMARK 500 ASP A 44 75.27 59.78 REMARK 500 HIS A 70 23.32 -144.34 REMARK 500 LYS A 112 16.24 59.57 REMARK 500 PHE A 136 64.74 -119.90 REMARK 500 SER A 150 -131.99 61.72 REMARK 500 ASN A 170 59.56 -91.07 REMARK 500 ASN A 178 59.87 34.02 REMARK 500 GLN A 215 85.19 35.22 REMARK 500 ASN A 216 13.43 83.36 REMARK 500 SER A 242 13.74 -144.71 REMARK 500 ASN A 248 100.19 -161.67 REMARK 500 ASN A 388 74.60 47.33 REMARK 500 GLU A 392 -83.22 -108.30 REMARK 500 ASP A 404 -48.74 79.56 REMARK 500 HIS A 418 -6.27 76.65 REMARK 500 GLN B 8 -78.95 -85.62 REMARK 500 ASP B 44 75.78 58.42 REMARK 500 HIS B 70 23.65 -144.60 REMARK 500 LYS B 112 17.53 59.35 REMARK 500 SER B 150 -131.97 61.83 REMARK 500 ASN B 170 59.00 -90.30 REMARK 500 ASN B 178 60.88 33.40 REMARK 500 SER B 242 13.73 -144.30 REMARK 500 ASN B 248 100.05 -161.46 REMARK 500 ASN B 388 74.49 48.16 REMARK 500 GLU B 392 -83.36 -108.82 REMARK 500 ASP B 404 -47.44 78.71 REMARK 500 HIS B 418 -3.09 73.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IVY RELATED DB: PDB REMARK 900 ZYMOGEN FORM REMARK 900 RELATED ID: 4MWS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN UNIDENTIFIED PROTEASE CONVERTED THE ZYMOGEN INTO ACTIVE ENZYME. REMARK 999 PUTATIVE TERMINI ASSUME PROTEOLYTIC REMOVAL OF 263-292, CONSISTENT REMARK 999 WITH MASS SPECTROMETRY AND N-TERMINAL SEQUENCING DATA. DBREF 4MWT A 1 452 UNP P10619 PPGB_HUMAN 29 480 DBREF 4MWT B 1 452 UNP P10619 PPGB_HUMAN 29 480 SEQADV 4MWT A UNP P10619 TYR 291 DELETION SEQADV 4MWT A UNP P10619 GLU 292 DELETION SEQADV 4MWT A UNP P10619 LYS 293 DELETION SEQADV 4MWT A UNP P10619 ASP 294 DELETION SEQADV 4MWT A UNP P10619 THR 295 DELETION SEQADV 4MWT A UNP P10619 VAL 296 DELETION SEQADV 4MWT A UNP P10619 VAL 297 DELETION SEQADV 4MWT A UNP P10619 VAL 298 DELETION SEQADV 4MWT A UNP P10619 GLN 299 DELETION SEQADV 4MWT A UNP P10619 ASP 300 DELETION SEQADV 4MWT A UNP P10619 LEU 301 DELETION SEQADV 4MWT A UNP P10619 GLY 302 DELETION SEQADV 4MWT A UNP P10619 ASN 303 DELETION SEQADV 4MWT A UNP P10619 ILE 304 DELETION SEQADV 4MWT A UNP P10619 PHE 305 DELETION SEQADV 4MWT A UNP P10619 THR 306 DELETION SEQADV 4MWT A UNP P10619 ARG 307 DELETION SEQADV 4MWT A UNP P10619 LEU 308 DELETION SEQADV 4MWT A UNP P10619 PRO 309 DELETION SEQADV 4MWT A UNP P10619 LEU 310 DELETION SEQADV 4MWT A UNP P10619 LYS 311 DELETION SEQADV 4MWT A UNP P10619 ARG 312 DELETION SEQADV 4MWT A UNP P10619 MET 313 DELETION SEQADV 4MWT A UNP P10619 TRP 314 DELETION SEQADV 4MWT A UNP P10619 HIS 315 DELETION SEQADV 4MWT A UNP P10619 GLN 316 DELETION SEQADV 4MWT A UNP P10619 ALA 317 DELETION SEQADV 4MWT A UNP P10619 LEU 318 DELETION SEQADV 4MWT A UNP P10619 LEU 319 DELETION SEQADV 4MWT A UNP P10619 ARG 320 DELETION SEQADV 4MWT HIS A 453 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS A 454 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS A 455 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS A 456 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS A 457 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS A 458 UNP P10619 EXPRESSION TAG SEQADV 4MWT B UNP P10619 TYR 291 DELETION SEQADV 4MWT B UNP P10619 GLU 292 DELETION SEQADV 4MWT B UNP P10619 LYS 293 DELETION SEQADV 4MWT B UNP P10619 ASP 294 DELETION SEQADV 4MWT B UNP P10619 THR 295 DELETION SEQADV 4MWT B UNP P10619 VAL 296 DELETION SEQADV 4MWT B UNP P10619 VAL 297 DELETION SEQADV 4MWT B UNP P10619 VAL 298 DELETION SEQADV 4MWT B UNP P10619 GLN 299 DELETION SEQADV 4MWT B UNP P10619 ASP 300 DELETION SEQADV 4MWT B UNP P10619 LEU 301 DELETION SEQADV 4MWT B UNP P10619 GLY 302 DELETION SEQADV 4MWT B UNP P10619 ASN 303 DELETION SEQADV 4MWT B UNP P10619 ILE 304 DELETION SEQADV 4MWT B UNP P10619 PHE 305 DELETION SEQADV 4MWT B UNP P10619 THR 306 DELETION SEQADV 4MWT B UNP P10619 ARG 307 DELETION SEQADV 4MWT B UNP P10619 LEU 308 DELETION SEQADV 4MWT B UNP P10619 PRO 309 DELETION SEQADV 4MWT B UNP P10619 LEU 310 DELETION SEQADV 4MWT B UNP P10619 LYS 311 DELETION SEQADV 4MWT B UNP P10619 ARG 312 DELETION SEQADV 4MWT B UNP P10619 MET 313 DELETION SEQADV 4MWT B UNP P10619 TRP 314 DELETION SEQADV 4MWT B UNP P10619 HIS 315 DELETION SEQADV 4MWT B UNP P10619 GLN 316 DELETION SEQADV 4MWT B UNP P10619 ALA 317 DELETION SEQADV 4MWT B UNP P10619 LEU 318 DELETION SEQADV 4MWT B UNP P10619 LEU 319 DELETION SEQADV 4MWT B UNP P10619 ARG 320 DELETION SEQADV 4MWT HIS B 453 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS B 454 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS B 455 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS B 456 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS B 457 UNP P10619 EXPRESSION TAG SEQADV 4MWT HIS B 458 UNP P10619 EXPRESSION TAG SEQRES 1 A 428 ALA PRO ASP GLN ASP GLU ILE GLN ARG LEU PRO GLY LEU SEQRES 2 A 428 ALA LYS GLN PRO SER PHE ARG GLN TYR SER GLY TYR LEU SEQRES 3 A 428 LYS GLY SER GLY SER LYS HIS LEU HIS TYR TRP PHE VAL SEQRES 4 A 428 GLU SER GLN LYS ASP PRO GLU ASN SER PRO VAL VAL LEU SEQRES 5 A 428 TRP LEU ASN GLY GLY PRO GLY CYS SER SER LEU ASP GLY SEQRES 6 A 428 LEU LEU THR GLU HIS GLY PRO PHE LEU VAL GLN PRO ASP SEQRES 7 A 428 GLY VAL THR LEU GLU TYR ASN PRO TYR SER TRP ASN LEU SEQRES 8 A 428 ILE ALA ASN VAL LEU TYR LEU GLU SER PRO ALA GLY VAL SEQRES 9 A 428 GLY PHE SER TYR SER ASP ASP LYS PHE TYR ALA THR ASN SEQRES 10 A 428 ASP THR GLU VAL ALA GLN SER ASN PHE GLU ALA LEU GLN SEQRES 11 A 428 ASP PHE PHE ARG LEU PHE PRO GLU TYR LYS ASN ASN LYS SEQRES 12 A 428 LEU PHE LEU THR GLY GLU SER TYR ALA GLY ILE TYR ILE SEQRES 13 A 428 PRO THR LEU ALA VAL LEU VAL MET GLN ASP PRO SER MET SEQRES 14 A 428 ASN LEU GLN GLY LEU ALA VAL GLY ASN GLY LEU SER SER SEQRES 15 A 428 TYR GLU GLN ASN ASP ASN SER LEU VAL TYR PHE ALA TYR SEQRES 16 A 428 TYR HIS GLY LEU LEU GLY ASN ARG LEU TRP SER SER LEU SEQRES 17 A 428 GLN THR HIS CYS CYS SER GLN ASN LYS CYS ASN PHE TYR SEQRES 18 A 428 ASP ASN LYS ASP LEU GLU CYS VAL THR ASN LEU GLN GLU SEQRES 19 A 428 VAL ALA ARG ILE VAL GLY ASN SER GLY LEU ASN ILE TYR SEQRES 20 A 428 ASN LEU TYR ALA PRO CYS ALA GLY GLY VAL PRO SER HIS SEQRES 21 A 428 PHE ARG SER GLY ASP LYS VAL ARG MET ASP PRO PRO CYS SEQRES 22 A 428 THR ASN THR THR ALA ALA SER THR TYR LEU ASN ASN PRO SEQRES 23 A 428 TYR VAL ARG LYS ALA LEU ASN ILE PRO GLU GLN LEU PRO SEQRES 24 A 428 GLN TRP ASP MET CYS ASN PHE LEU VAL ASN LEU GLN TYR SEQRES 25 A 428 ARG ARG LEU TYR ARG SER MET ASN SER GLN TYR LEU LYS SEQRES 26 A 428 LEU LEU SER SER GLN LYS TYR GLN ILE LEU LEU TYR ASN SEQRES 27 A 428 GLY ASP VAL ASP MET ALA CYS ASN PHE MET GLY ASP GLU SEQRES 28 A 428 TRP PHE VAL ASP SER LEU ASN GLN LYS MET GLU VAL GLN SEQRES 29 A 428 ARG ARG PRO TRP LEU VAL LYS TYR GLY ASP SER GLY GLU SEQRES 30 A 428 GLN ILE ALA GLY PHE VAL LYS GLU PHE SER HIS ILE ALA SEQRES 31 A 428 PHE LEU THR ILE LYS GLY ALA GLY HIS MET VAL PRO THR SEQRES 32 A 428 ASP LYS PRO LEU ALA ALA PHE THR MET PHE SER ARG PHE SEQRES 33 A 428 LEU ASN LYS GLN PRO TYR HIS HIS HIS HIS HIS HIS SEQRES 1 B 428 ALA PRO ASP GLN ASP GLU ILE GLN ARG LEU PRO GLY LEU SEQRES 2 B 428 ALA LYS GLN PRO SER PHE ARG GLN TYR SER GLY TYR LEU SEQRES 3 B 428 LYS GLY SER GLY SER LYS HIS LEU HIS TYR TRP PHE VAL SEQRES 4 B 428 GLU SER GLN LYS ASP PRO GLU ASN SER PRO VAL VAL LEU SEQRES 5 B 428 TRP LEU ASN GLY GLY PRO GLY CYS SER SER LEU ASP GLY SEQRES 6 B 428 LEU LEU THR GLU HIS GLY PRO PHE LEU VAL GLN PRO ASP SEQRES 7 B 428 GLY VAL THR LEU GLU TYR ASN PRO TYR SER TRP ASN LEU SEQRES 8 B 428 ILE ALA ASN VAL LEU TYR LEU GLU SER PRO ALA GLY VAL SEQRES 9 B 428 GLY PHE SER TYR SER ASP ASP LYS PHE TYR ALA THR ASN SEQRES 10 B 428 ASP THR GLU VAL ALA GLN SER ASN PHE GLU ALA LEU GLN SEQRES 11 B 428 ASP PHE PHE ARG LEU PHE PRO GLU TYR LYS ASN ASN LYS SEQRES 12 B 428 LEU PHE LEU THR GLY GLU SER TYR ALA GLY ILE TYR ILE SEQRES 13 B 428 PRO THR LEU ALA VAL LEU VAL MET GLN ASP PRO SER MET SEQRES 14 B 428 ASN LEU GLN GLY LEU ALA VAL GLY ASN GLY LEU SER SER SEQRES 15 B 428 TYR GLU GLN ASN ASP ASN SER LEU VAL TYR PHE ALA TYR SEQRES 16 B 428 TYR HIS GLY LEU LEU GLY ASN ARG LEU TRP SER SER LEU SEQRES 17 B 428 GLN THR HIS CYS CYS SER GLN ASN LYS CYS ASN PHE TYR SEQRES 18 B 428 ASP ASN LYS ASP LEU GLU CYS VAL THR ASN LEU GLN GLU SEQRES 19 B 428 VAL ALA ARG ILE VAL GLY ASN SER GLY LEU ASN ILE TYR SEQRES 20 B 428 ASN LEU TYR ALA PRO CYS ALA GLY GLY VAL PRO SER HIS SEQRES 21 B 428 PHE ARG SER GLY ASP LYS VAL ARG MET ASP PRO PRO CYS SEQRES 22 B 428 THR ASN THR THR ALA ALA SER THR TYR LEU ASN ASN PRO SEQRES 23 B 428 TYR VAL ARG LYS ALA LEU ASN ILE PRO GLU GLN LEU PRO SEQRES 24 B 428 GLN TRP ASP MET CYS ASN PHE LEU VAL ASN LEU GLN TYR SEQRES 25 B 428 ARG ARG LEU TYR ARG SER MET ASN SER GLN TYR LEU LYS SEQRES 26 B 428 LEU LEU SER SER GLN LYS TYR GLN ILE LEU LEU TYR ASN SEQRES 27 B 428 GLY ASP VAL ASP MET ALA CYS ASN PHE MET GLY ASP GLU SEQRES 28 B 428 TRP PHE VAL ASP SER LEU ASN GLN LYS MET GLU VAL GLN SEQRES 29 B 428 ARG ARG PRO TRP LEU VAL LYS TYR GLY ASP SER GLY GLU SEQRES 30 B 428 GLN ILE ALA GLY PHE VAL LYS GLU PHE SER HIS ILE ALA SEQRES 31 B 428 PHE LEU THR ILE LYS GLY ALA GLY HIS MET VAL PRO THR SEQRES 32 B 428 ASP LYS PRO LEU ALA ALA PHE THR MET PHE SER ARG PHE SEQRES 33 B 428 LEU ASN LYS GLN PRO TYR HIS HIS HIS HIS HIS HIS MODRES 4MWT ASN B 305 ASN GLYCOSYLATION SITE MODRES 4MWT ASN A 117 ASN GLYCOSYLATION SITE MODRES 4MWT ASN B 117 ASN GLYCOSYLATION SITE MODRES 4MWT ASN A 305 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 504 14 HET NAG B 501 14 HET NAG B 502 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 HELIX 1 1 PRO A 2 GLU A 6 5 5 HELIX 2 2 ASP A 44 SER A 48 5 5 HELIX 3 3 SER A 62 GLU A 69 1 8 HELIX 4 4 SER A 88 ILE A 92 5 5 HELIX 5 5 ASN A 117 PHE A 136 1 20 HELIX 6 6 PRO A 137 LYS A 140 5 4 HELIX 7 7 TYR A 151 GLN A 165 1 15 HELIX 8 8 SER A 182 HIS A 197 1 16 HELIX 9 9 LEU A 200 CYS A 213 1 14 HELIX 10 10 ASP A 225 ASN A 241 1 17 HELIX 11 11 THR A 306 ASN A 315 1 10 HELIX 12 12 ASN A 315 LEU A 322 1 8 HELIX 13 13 ASN A 335 GLN A 341 1 7 HELIX 14 14 MET A 349 GLN A 360 1 12 HELIX 15 15 ASN A 376 SER A 386 1 11 HELIX 16 16 MET A 430 LYS A 435 1 6 HELIX 17 17 LYS A 435 ASN A 448 1 14 HELIX 18 18 PRO B 2 GLU B 6 5 5 HELIX 19 19 ASP B 44 SER B 48 5 5 HELIX 20 20 SER B 62 GLU B 69 1 8 HELIX 21 21 SER B 88 ILE B 92 5 5 HELIX 22 22 ASN B 117 PHE B 136 1 20 HELIX 23 23 PRO B 137 LYS B 140 5 4 HELIX 24 24 TYR B 151 GLN B 165 1 15 HELIX 25 25 SER B 182 HIS B 197 1 16 HELIX 26 26 LEU B 200 CYS B 212 1 13 HELIX 27 27 ASP B 225 ASN B 241 1 17 HELIX 28 28 THR B 306 ASN B 315 1 10 HELIX 29 29 ASN B 315 LEU B 322 1 8 HELIX 30 30 ASN B 335 GLN B 341 1 7 HELIX 31 31 MET B 349 GLN B 360 1 12 HELIX 32 32 ASN B 376 SER B 386 1 11 HELIX 33 33 MET B 430 LYS B 435 1 6 HELIX 34 34 LYS B 435 ASN B 448 1 14 SHEET 1 A 3 GLN A 21 LYS A 27 0 SHEET 2 A 3 LYS A 32 VAL A 39 -1 O TYR A 36 N GLY A 24 SHEET 3 A 3 TYR A 108 SER A 109 -1 O TYR A 108 N HIS A 33 SHEET 1 B10 GLN A 21 LYS A 27 0 SHEET 2 B10 LYS A 32 VAL A 39 -1 O TYR A 36 N GLY A 24 SHEET 3 B10 ASN A 94 LEU A 98 -1 O TYR A 97 N TRP A 37 SHEET 4 B10 VAL A 50 LEU A 54 1 N VAL A 51 O LEU A 96 SHEET 5 B10 LEU A 144 GLU A 149 1 O PHE A 145 N VAL A 50 SHEET 6 B10 LEU A 171 GLY A 177 1 O GLN A 172 N LEU A 144 SHEET 7 B10 GLN A 363 GLY A 369 1 O LEU A 365 N VAL A 176 SHEET 8 B10 ILE A 419 ILE A 424 1 O ILE A 424 N ASN A 368 SHEET 9 B10 GLY A 406 PHE A 416 -1 N PHE A 412 O THR A 423 SHEET 10 B10 ARG A 396 TYR A 402 -1 N ARG A 396 O VAL A 413 SHEET 1 C 2 PHE A 73 VAL A 75 0 SHEET 2 C 2 LEU A 82 TYR A 84 -1 O GLU A 83 N LEU A 74 SHEET 1 D 3 GLN B 21 LYS B 27 0 SHEET 2 D 3 LYS B 32 VAL B 39 -1 O TYR B 36 N GLY B 24 SHEET 3 D 3 TYR B 108 SER B 109 -1 O TYR B 108 N HIS B 33 SHEET 1 E10 GLN B 21 LYS B 27 0 SHEET 2 E10 LYS B 32 VAL B 39 -1 O TYR B 36 N GLY B 24 SHEET 3 E10 ASN B 94 LEU B 98 -1 O TYR B 97 N TRP B 37 SHEET 4 E10 VAL B 50 LEU B 54 1 N VAL B 51 O LEU B 96 SHEET 5 E10 LEU B 144 GLU B 149 1 O PHE B 145 N VAL B 50 SHEET 6 E10 LEU B 171 GLY B 177 1 O GLN B 172 N LEU B 144 SHEET 7 E10 GLN B 363 GLY B 369 1 O LEU B 365 N VAL B 176 SHEET 8 E10 ILE B 419 ILE B 424 1 O ILE B 424 N ASN B 368 SHEET 9 E10 GLY B 406 PHE B 416 -1 N LYS B 414 O PHE B 421 SHEET 10 E10 ARG B 396 TYR B 402 -1 N ARG B 396 O VAL B 413 SHEET 1 F 2 PHE B 73 VAL B 75 0 SHEET 2 F 2 LEU B 82 TYR B 84 -1 O GLU B 83 N LEU B 74 SHEET 1 G 2 CYS B 213 SER B 214 0 SHEET 2 G 2 LYS B 217 CYS B 218 -1 O LYS B 217 N SER B 214 SSBOND 1 CYS A 60 CYS A 334 1555 1555 2.06 SSBOND 2 CYS A 212 CYS A 228 1555 1555 2.02 SSBOND 3 CYS A 213 CYS A 218 1555 1555 2.04 SSBOND 4 CYS A 253 CYS A 303 1555 1555 2.05 SSBOND 5 CYS B 60 CYS B 334 1555 1555 2.05 SSBOND 6 CYS B 212 CYS B 228 1555 1555 2.05 SSBOND 7 CYS B 213 CYS B 218 1555 1555 2.05 SSBOND 8 CYS B 253 CYS B 303 1555 1555 2.04 LINK ND2 ASN A 117 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 305 C1 NAG A 504 1555 1555 1.47 LINK ND2 ASN B 117 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 305 C1 NAG B 502 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 CISPEP 1 GLY A 57 PRO A 58 0 -8.05 CISPEP 2 SER A 100 PRO A 101 0 -0.41 CISPEP 3 GLY B 57 PRO B 58 0 -7.92 CISPEP 4 SER B 100 PRO B 101 0 -2.81 CRYST1 134.575 134.575 99.776 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007431 0.004290 0.000000 0.00000 SCALE2 0.000000 0.008580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010022 0.00000