HEADER LYASE 26-SEP-13 4MXD TITLE 1.45 ANGSTRONM CRYSTAL STRUCTURE OF E.COLI 2-SUCCINYL-6-HYDROXY-2,4- TITLE 2 CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE (MENH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE COMPND 3 SYNTHASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SHCHC SYNTHASE; COMPND 6 EC: 4.2.99.20; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2263, JW2258, MENH, YFBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM KEYWDS OPEN CONFORMATION, ALPHA/BETA HYDROLASE FOLD, 2-SUCCINYL-6-HYDROXY-2, KEYWDS 2 4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SUN,S.YIN,Y.FENG,J.LI,J.ZHOU,C.LIU,G.ZHU,Z.GUO REVDAT 4 08-NOV-23 4MXD 1 REMARK REVDAT 3 24-AUG-22 4MXD 1 JRNL REMARK SEQADV REVDAT 2 07-MAY-14 4MXD 1 JRNL REVDAT 1 23-APR-14 4MXD 0 JRNL AUTH Y.SUN,S.YIN,Y.FENG,J.LI,J.ZHOU,C.LIU,G.ZHU,Z.GUO JRNL TITL MOLECULAR BASIS OF THE GENERAL BASE CATALYSIS OF AN ALPHA / JRNL TITL 2 BETA-HYDROLASE CATALYTIC TRIAD. JRNL REF J.BIOL.CHEM. V. 289 15867 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24737327 JRNL DOI 10.1074/JBC.M113.535641 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 59422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8432 - 3.4945 0.99 4381 154 0.1503 0.1569 REMARK 3 2 3.4945 - 2.7738 1.00 4257 143 0.1625 0.1719 REMARK 3 3 2.7738 - 2.4232 1.00 4245 147 0.1592 0.2224 REMARK 3 4 2.4232 - 2.2017 1.00 4182 145 0.1522 0.1586 REMARK 3 5 2.2017 - 2.0439 1.00 4186 145 0.1491 0.1569 REMARK 3 6 2.0439 - 1.9234 0.99 4138 146 0.1495 0.1405 REMARK 3 7 1.9234 - 1.8271 0.99 4118 141 0.1513 0.1527 REMARK 3 8 1.8271 - 1.7475 0.98 4077 141 0.1547 0.1797 REMARK 3 9 1.7475 - 1.6802 0.98 4057 139 0.1514 0.1740 REMARK 3 10 1.6802 - 1.6223 0.98 4081 138 0.1492 0.1771 REMARK 3 11 1.6223 - 1.5715 0.97 3999 134 0.1518 0.1471 REMARK 3 12 1.5715 - 1.5266 0.96 3956 139 0.1607 0.1498 REMARK 3 13 1.5266 - 1.4864 0.94 3899 135 0.1748 0.2076 REMARK 3 14 1.4864 - 1.4502 0.93 3863 136 0.1895 0.2031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2162 REMARK 3 ANGLE : 1.110 2947 REMARK 3 CHIRALITY : 0.080 307 REMARK 3 PLANARITY : 0.004 398 REMARK 3 DIHEDRAL : 15.062 781 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -2:3) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2323 18.3020 21.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.3076 REMARK 3 T33: 0.1809 T12: 0.0249 REMARK 3 T13: 0.0088 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.7312 L22: 2.0313 REMARK 3 L33: 4.1381 L12: 0.2029 REMARK 3 L13: 1.6880 L23: -0.6682 REMARK 3 S TENSOR REMARK 3 S11: 0.3087 S12: -0.5873 S13: -0.2576 REMARK 3 S21: 0.4229 S22: -0.0007 S23: -0.5534 REMARK 3 S31: 0.2957 S32: 0.7924 S33: 0.2197 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 4:14) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5590 23.0520 12.4231 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.2505 REMARK 3 T33: 0.1502 T12: -0.0364 REMARK 3 T13: 0.0337 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 4.3642 L22: 0.5854 REMARK 3 L33: 3.3724 L12: -0.7755 REMARK 3 L13: 3.7356 L23: -0.3599 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: -0.6602 S13: -0.3486 REMARK 3 S21: 0.1717 S22: 0.0721 S23: 0.2099 REMARK 3 S31: 0.2910 S32: -0.5258 S33: -0.0942 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 15:49) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6267 28.3148 7.8773 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1207 REMARK 3 T33: 0.0600 T12: 0.0027 REMARK 3 T13: 0.0079 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.5168 L22: 0.5477 REMARK 3 L33: 1.1800 L12: -0.1594 REMARK 3 L13: 0.9284 L23: -0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.1654 S13: 0.0097 REMARK 3 S21: 0.0882 S22: 0.0199 S23: 0.0212 REMARK 3 S31: 0.0541 S32: -0.0613 S33: -0.0247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 50:56) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8510 27.4839 17.0235 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2015 REMARK 3 T33: 0.0816 T12: 0.0222 REMARK 3 T13: -0.0245 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.4863 L22: 3.6079 REMARK 3 L33: 3.2298 L12: -0.5062 REMARK 3 L13: 2.1953 L23: -2.5087 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.1985 S13: -0.2441 REMARK 3 S21: 0.1673 S22: -0.1306 S23: -0.2436 REMARK 3 S31: 0.4611 S32: 0.3832 S33: -0.0184 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 57:74) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9823 16.2327 11.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.1540 REMARK 3 T33: 0.0990 T12: 0.0633 REMARK 3 T13: -0.0387 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 5.3153 L22: 2.1112 REMARK 3 L33: 3.4815 L12: 1.7986 REMARK 3 L13: -2.1766 L23: -0.8588 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.1953 S13: -0.3808 REMARK 3 S21: 0.0798 S22: 0.0383 S23: -0.1677 REMARK 3 S31: 0.5169 S32: 0.2291 S33: 0.0013 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 75:82) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8208 15.7698 7.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.1722 REMARK 3 T33: 0.1392 T12: -0.0678 REMARK 3 T13: -0.0136 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 0.3642 L22: 0.1646 REMARK 3 L33: 3.5480 L12: -0.1804 REMARK 3 L13: 0.0851 L23: -0.5715 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: -0.1659 S13: -0.2556 REMARK 3 S21: -0.0707 S22: 0.0650 S23: 0.1064 REMARK 3 S31: 0.9153 S32: -0.3003 S33: 0.0558 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 83:99) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6877 21.6755 1.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1324 REMARK 3 T33: 0.0576 T12: 0.0305 REMARK 3 T13: -0.0005 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.0553 L22: 2.1733 REMARK 3 L33: 2.4679 L12: -0.7091 REMARK 3 L13: 0.2640 L23: 0.6815 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: -0.0267 S13: -0.1466 REMARK 3 S21: -0.0320 S22: 0.0114 S23: -0.0096 REMARK 3 S31: 0.3061 S32: 0.2084 S33: -0.0887 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 100:108) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3482 17.1012 0.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.1251 REMARK 3 T33: 0.1665 T12: -0.0246 REMARK 3 T13: -0.0192 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.4048 L22: 4.1997 REMARK 3 L33: 7.5668 L12: 0.7040 REMARK 3 L13: -0.9491 L23: -5.6353 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.1199 S13: -0.6213 REMARK 3 S21: -0.2476 S22: -0.0358 S23: -0.0150 REMARK 3 S31: 0.7483 S32: -0.2889 S33: 0.0724 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 109:116) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8976 26.2876 -6.0544 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.1885 REMARK 3 T33: 0.0888 T12: 0.0070 REMARK 3 T13: 0.0091 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.2512 L22: 3.7177 REMARK 3 L33: 2.2049 L12: -1.7014 REMARK 3 L13: 1.8663 L23: -0.7461 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.2659 S13: -0.0849 REMARK 3 S21: -0.1125 S22: 0.0574 S23: -0.2628 REMARK 3 S31: -0.0244 S32: 0.4776 S33: -0.1619 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 117:129) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4145 27.9050 -2.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.6730 REMARK 3 T33: 0.3796 T12: -0.0892 REMARK 3 T13: 0.0304 T23: -0.1682 REMARK 3 L TENSOR REMARK 3 L11: 1.7477 L22: 4.4047 REMARK 3 L33: 4.7777 L12: -0.4235 REMARK 3 L13: -1.3792 L23: 4.3157 REMARK 3 S TENSOR REMARK 3 S11: -0.2175 S12: 1.4165 S13: -0.4205 REMARK 3 S21: -0.4965 S22: 0.5845 S23: -0.2203 REMARK 3 S31: -0.1517 S32: 0.9331 S33: -0.1520 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 130:143) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6439 38.6689 10.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.2657 REMARK 3 T33: 0.1727 T12: -0.0723 REMARK 3 T13: -0.0352 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.8191 L22: 4.8581 REMARK 3 L33: 0.4428 L12: -1.4368 REMARK 3 L13: 0.4015 L23: 0.9717 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.1394 S13: 0.0025 REMARK 3 S21: 0.4264 S22: -0.1661 S23: -0.0395 REMARK 3 S31: -0.3499 S32: 0.2499 S33: 0.0651 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 144:156) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3606 42.9825 1.5361 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.4248 REMARK 3 T33: 0.2952 T12: -0.1004 REMARK 3 T13: -0.0303 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 2.5349 L22: 1.9198 REMARK 3 L33: 3.6193 L12: -0.1961 REMARK 3 L13: 2.9080 L23: -0.9669 REMARK 3 S TENSOR REMARK 3 S11: -0.4025 S12: 1.0720 S13: 0.6803 REMARK 3 S21: -0.5890 S22: 0.2710 S23: 0.2640 REMARK 3 S31: -0.5233 S32: 0.4255 S33: 0.0648 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 157:176) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3176 43.2831 10.1213 REMARK 3 T TENSOR REMARK 3 T11: 0.3275 T22: 0.2263 REMARK 3 T33: 0.2942 T12: -0.0281 REMARK 3 T13: -0.0351 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.9104 L22: 2.8603 REMARK 3 L33: 2.6609 L12: -1.1241 REMARK 3 L13: 0.1937 L23: 1.4621 REMARK 3 S TENSOR REMARK 3 S11: -0.2154 S12: -0.2096 S13: 0.7523 REMARK 3 S21: -0.0507 S22: 0.1869 S23: -0.1468 REMARK 3 S31: -0.7477 S32: 0.0215 S33: 0.0081 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 177:193) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5526 22.9658 1.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.2606 REMARK 3 T33: 0.1179 T12: 0.0494 REMARK 3 T13: -0.0031 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.2926 L22: 1.5638 REMARK 3 L33: 2.5927 L12: 0.5926 REMARK 3 L13: 0.1995 L23: 1.3744 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: 0.0744 S13: -0.1164 REMARK 3 S21: 0.0719 S22: 0.2051 S23: -0.2078 REMARK 3 S31: 0.1172 S32: 0.6240 S33: -0.1838 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 194:201) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8184 13.6594 -8.1835 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.1307 REMARK 3 T33: 0.1080 T12: 0.0385 REMARK 3 T13: -0.0080 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.3064 L22: 3.3591 REMARK 3 L33: 4.7264 L12: -0.7239 REMARK 3 L13: -2.9814 L23: 2.5804 REMARK 3 S TENSOR REMARK 3 S11: -0.2202 S12: -0.1388 S13: -0.3561 REMARK 3 S21: 0.0009 S22: 0.1231 S23: 0.0940 REMARK 3 S31: 0.2619 S32: 0.1325 S33: -0.0212 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 202:210) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1636 31.5187 -9.4407 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1321 REMARK 3 T33: 0.0743 T12: 0.0200 REMARK 3 T13: 0.0304 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.4357 L22: 6.2305 REMARK 3 L33: 2.6863 L12: 0.0783 REMARK 3 L13: -1.1841 L23: 0.5306 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.1043 S13: 0.1513 REMARK 3 S21: -0.2187 S22: -0.0283 S23: -0.0120 REMARK 3 S31: -0.1530 S32: 0.1141 S33: -0.0970 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 211:222) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3992 28.2315 -12.6775 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.2007 REMARK 3 T33: 0.0751 T12: 0.0155 REMARK 3 T13: 0.0386 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.0839 L22: 6.7112 REMARK 3 L33: 2.9821 L12: -0.1161 REMARK 3 L13: -0.4249 L23: 1.9464 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.1181 S13: 0.1026 REMARK 3 S21: -0.1294 S22: 0.0003 S23: -0.1597 REMARK 3 S31: -0.0706 S32: 0.2134 S33: -0.1215 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 223:229) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0148 32.9808 -11.5326 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.1544 REMARK 3 T33: 0.0719 T12: 0.0433 REMARK 3 T13: 0.0039 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.1652 L22: 2.0198 REMARK 3 L33: 3.3424 L12: 0.1869 REMARK 3 L13: 0.1447 L23: 2.4364 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.2627 S13: 0.1404 REMARK 3 S21: -0.4573 S22: -0.0060 S23: 0.0585 REMARK 3 S31: -0.1500 S32: -0.0696 S33: -0.0665 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 230:244) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9699 37.1790 -2.8084 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0961 REMARK 3 T33: 0.0767 T12: 0.0082 REMARK 3 T13: 0.0125 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.4195 L22: 1.8680 REMARK 3 L33: 4.0425 L12: -0.4194 REMARK 3 L13: 0.2224 L23: 0.1113 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.0030 S13: 0.1604 REMARK 3 S21: -0.0212 S22: -0.1087 S23: -0.2227 REMARK 3 S31: -0.1554 S32: 0.2565 S33: 0.0350 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 245:252) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2361 25.0849 -5.5777 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.1272 REMARK 3 T33: 0.0920 T12: 0.0162 REMARK 3 T13: -0.0150 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 7.3300 L22: 3.1922 REMARK 3 L33: 3.9174 L12: -1.7268 REMARK 3 L13: -1.2844 L23: -1.9045 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: 0.1510 S13: -0.3166 REMARK 3 S21: -0.3216 S22: -0.0861 S23: 0.1209 REMARK 3 S31: 0.3046 S32: -0.0128 S33: 0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1R3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1M TRIS BUFFER (PH REMARK 280 9.0), 30% V/V GLYCEROL, 17% PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.52767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.05533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.05533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.52767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 742 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 523 O HOH A 749 1.86 REMARK 500 O HOH A 555 O HOH A 736 1.96 REMARK 500 O1 SO4 A 301 O HOH A 736 2.04 REMARK 500 O2 GOL A 305 O HOH A 736 2.05 REMARK 500 O3 SO4 A 301 O HOH A 736 2.12 REMARK 500 O HOH A 698 O HOH A 749 2.12 REMARK 500 O HOH A 740 O HOH A 741 2.13 REMARK 500 S SO4 A 301 O HOH A 736 2.13 REMARK 500 OE2 GLU A 181 O HOH A 593 2.17 REMARK 500 O HOH A 546 O HOH A 743 2.17 REMARK 500 OE2 GLU A 181 O HOH A 606 2.18 REMARK 500 O HOH A 531 O HOH A 731 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 24 -12.36 77.87 REMARK 500 SER A 86 -119.15 54.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MYD RELATED DB: PDB REMARK 900 RELATED ID: 4MYS RELATED DB: PDB DBREF 4MXD A 1 252 UNP P37355 MENH_ECOLI 1 252 SEQADV 4MXD SER A -2 UNP P37355 EXPRESSION TAG SEQADV 4MXD GLY A -1 UNP P37355 EXPRESSION TAG SEQADV 4MXD SER A 0 UNP P37355 EXPRESSION TAG SEQRES 1 A 255 SER GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 2 A 255 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 3 A 255 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 4 A 255 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 5 A 255 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 6 A 255 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 7 A 255 ASN ILE LEU ASP PHE TRP LEU VAL GLY TYR SER LEU GLY SEQRES 8 A 255 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 9 A 255 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 10 A 255 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 11 A 255 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 12 A 255 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 13 A 255 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 14 A 255 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 15 A 255 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 16 A 255 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 17 A 255 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 18 A 255 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 19 A 255 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 20 A 255 SER LEU ALA GLN ILE LEU ARG PHE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET PEG A 304 7 HET GOL A 305 6 HET PGE A 306 10 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 PEG C4 H10 O3 FORMUL 6 GOL C3 H8 O3 FORMUL 7 PGE C6 H14 O4 FORMUL 8 HOH *349(H2 O) HELIX 1 1 TRP A 30 GLU A 35 1 6 HELIX 2 2 HIS A 50 ALA A 54 5 5 HELIX 3 3 GLY A 60 TYR A 75 1 16 HELIX 4 4 SER A 86 GLY A 99 1 14 HELIX 5 5 ASN A 117 GLU A 138 1 22 HELIX 6 6 PRO A 139 TYR A 148 1 10 HELIX 7 7 GLN A 149 ALA A 154 5 6 HELIX 8 8 ASN A 157 SER A 169 1 13 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 SER A 184 GLN A 188 5 5 HELIX 11 11 LEU A 191 ALA A 197 1 7 HELIX 12 12 ASP A 210 LEU A 220 1 11 HELIX 13 13 ASN A 233 ASN A 238 1 6 HELIX 14 14 ASN A 238 ARG A 251 1 14 SHEET 1 A 7 ALA A 5 LYS A 8 0 SHEET 2 A 7 SER A 41 VAL A 45 -1 O TYR A 44 N GLN A 6 SHEET 3 A 7 TRP A 16 LEU A 20 1 N LEU A 17 O LEU A 43 SHEET 4 A 7 PHE A 80 TYR A 85 1 O VAL A 83 N LEU A 20 SHEET 5 A 7 LEU A 103 GLU A 109 1 O CYS A 104 N PHE A 80 SHEET 6 A 7 ALA A 201 GLY A 207 1 O LEU A 205 N VAL A 108 SHEET 7 A 7 HIS A 225 ILE A 227 1 O ILE A 227 N CYS A 206 SSBOND 1 CYS A 206 CYS A 224 1555 1555 2.07 SITE 1 AC1 11 TYR A 148 PHE A 153 LEU A 164 ARG A 168 SITE 2 AC1 11 ARG A 236 GOL A 305 HOH A 410 HOH A 443 SITE 3 AC1 11 HOH A 555 HOH A 599 HOH A 736 SITE 1 AC2 9 HIS A 112 ARG A 124 LYS A 212 PHE A 213 SITE 2 AC2 9 HOH A 433 HOH A 435 HOH A 587 HOH A 590 SITE 3 AC2 9 HOH A 664 SITE 1 AC3 5 MET A 94 CYS A 97 PRO A 189 ASN A 194 SITE 2 AC3 5 HOH A 678 SITE 1 AC4 6 GLU A 32 ARG A 229 HOH A 463 HOH A 655 SITE 2 AC4 6 HOH A 675 HOH A 702 SITE 1 AC5 10 TYR A 85 SER A 86 VAL A 152 HIS A 232 SITE 2 AC5 10 SO4 A 301 HOH A 405 HOH A 410 HOH A 444 SITE 3 AC5 10 HOH A 555 HOH A 736 SITE 1 AC6 8 GLU A 163 ARG A 236 HOH A 502 HOH A 537 SITE 2 AC6 8 HOH A 562 HOH A 695 HOH A 729 HOH A 738 CRYST1 72.163 72.163 112.583 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013858 0.008001 0.000000 0.00000 SCALE2 0.000000 0.016001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008882 0.00000