HEADER GENE REGULATION 30-SEP-13 4MZG TITLE CRYSTAL STRUCTURE OF HUMAN SPINDLIN1 BOUND TO HISTONE H3K4ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE FROM HISTONE H3.2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HISTONE H3/M, HISTONE H3/O; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPINDLIN-1; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 50-262; COMPND 10 SYNONYM: SP1, OVARIAN CANCER-RELATED PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SPIN1, OCR, SPIN; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PRSFDUET KEYWDS WNT SIGNAL, HISTONE H3, NUCLEAR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.SU,X.DING,H.LI REVDAT 1 26-MAR-14 4MZG 0 JRNL AUTH X.SU,G.ZHU,X.DING,S.Y.LEE,Y.DOU,B.ZHU,W.WU,H.LI JRNL TITL MOLECULAR BASIS UNDERLYING HISTONE H3 LYSINE-ARGININE JRNL TITL 2 METHYLATION PATTERN READOUT BY SPIN/SSTY REPEATS OF JRNL TITL 3 SPINDLIN1 JRNL REF GENES DEV. V. 28 622 2014 JRNL REFN ISSN 0890-9369 JRNL PMID 24589551 JRNL DOI 10.1101/GAD.233239.113 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 56200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1497 - 4.6048 0.95 2616 134 0.1714 0.1691 REMARK 3 2 4.6048 - 3.6566 1.00 2702 136 0.1455 0.1570 REMARK 3 3 3.6566 - 3.1949 1.00 2727 139 0.1747 0.2126 REMARK 3 4 3.1949 - 2.9030 1.00 2678 133 0.1886 0.2092 REMARK 3 5 2.9030 - 2.6950 1.00 2654 174 0.2040 0.2342 REMARK 3 6 2.6950 - 2.5362 1.00 2701 155 0.1908 0.2068 REMARK 3 7 2.5362 - 2.4092 1.00 2681 137 0.1941 0.2335 REMARK 3 8 2.4092 - 2.3044 1.00 2719 137 0.1903 0.2079 REMARK 3 9 2.3044 - 2.2157 1.00 2726 136 0.1813 0.2070 REMARK 3 10 2.2157 - 2.1392 1.00 2654 143 0.1744 0.2435 REMARK 3 11 2.1392 - 2.0724 1.00 2667 149 0.1810 0.2077 REMARK 3 12 2.0724 - 2.0131 1.00 2712 147 0.1912 0.2219 REMARK 3 13 2.0131 - 1.9601 1.00 2642 139 0.2029 0.2417 REMARK 3 14 1.9601 - 1.9123 1.00 2672 147 0.2061 0.2392 REMARK 3 15 1.9123 - 1.8688 1.00 2695 169 0.2106 0.2602 REMARK 3 16 1.8688 - 1.8291 1.00 2690 152 0.2144 0.2727 REMARK 3 17 1.8291 - 1.7925 1.00 2659 131 0.2132 0.2044 REMARK 3 18 1.7925 - 1.7587 1.00 2699 130 0.2162 0.3010 REMARK 3 19 1.7587 - 1.7273 1.00 2655 130 0.2465 0.2799 REMARK 3 20 1.7273 - 1.6980 0.88 2406 127 0.2575 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3380 REMARK 3 ANGLE : 1.168 4574 REMARK 3 CHIRALITY : 0.081 491 REMARK 3 PLANARITY : 0.005 578 REMARK 3 DIHEDRAL : 15.094 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-13. REMARK 100 THE RCSB ID CODE IS RCSB082559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : 0.64500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% MPD_P1K_P3350, 0.1M BICINE/ REMARK 280 TRIZMA, PH 8.5, 0.06M MGCL2/CACL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.01850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 HIS B 41 REMARK 465 HIS B 42 REMARK 465 HIS B 43 REMARK 465 HIS B 44 REMARK 465 HIS B 45 REMARK 465 HIS B 46 REMARK 465 GLY B 47 REMARK 465 SER B 196 REMARK 465 ASN B 197 REMARK 465 ASP B 198 REMARK 465 SER B 199 REMARK 465 PRO B 200 REMARK 465 PRO B 201 REMARK 465 ALA B 202 REMARK 465 GLU B 203 REMARK 465 ARG B 204 REMARK 465 GLU B 205 REMARK 465 PRO B 206 REMARK 465 GLY B 207 REMARK 465 GLU B 208 REMARK 465 VAL B 209 REMARK 465 VAL B 210 REMARK 465 ASP B 211 REMARK 465 LYS B 260 REMARK 465 THR B 261 REMARK 465 SER B 262 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 HIS D 41 REMARK 465 HIS D 42 REMARK 465 HIS D 43 REMARK 465 HIS D 44 REMARK 465 HIS D 45 REMARK 465 HIS D 46 REMARK 465 GLY D 47 REMARK 465 SER D 196 REMARK 465 ASN D 197 REMARK 465 ASP D 198 REMARK 465 SER D 199 REMARK 465 PRO D 200 REMARK 465 PRO D 201 REMARK 465 ALA D 202 REMARK 465 GLU D 203 REMARK 465 ARG D 204 REMARK 465 GLU D 205 REMARK 465 PRO D 206 REMARK 465 GLY D 207 REMARK 465 GLU D 208 REMARK 465 VAL D 209 REMARK 465 ALA D 221 REMARK 465 LYS D 222 REMARK 465 GLU D 223 REMARK 465 ASP D 224 REMARK 465 GLY D 225 REMARK 465 SER D 226 REMARK 465 LYS D 227 REMARK 465 LYS D 260 REMARK 465 THR D 261 REMARK 465 SER D 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 535 O HOH B 552 2.13 REMARK 500 O HOH D 503 O HOH D 551 2.14 REMARK 500 NH1 ARG D 158 O HOH D 523 2.17 REMARK 500 O ASN D 66 O HOH D 446 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 83 86.63 -155.08 REMARK 500 VAL B 161 -57.94 71.80 REMARK 500 ASP B 173 77.46 -152.91 REMARK 500 LYS B 239 73.90 -150.00 REMARK 500 VAL D 161 -58.68 70.84 REMARK 500 ASP D 173 79.52 -155.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 422 O REMARK 620 2 HOH B 414 O 177.2 REMARK 620 3 HOH B 431 O 87.7 89.6 REMARK 620 4 HOH B 428 O 87.1 92.3 92.4 REMARK 620 5 HOH D 421 O 88.1 92.8 93.7 172.1 REMARK 620 6 HOH D 428 O 93.9 88.8 178.4 87.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MZF RELATED DB: PDB REMARK 900 RELATED ID: 4MZH RELATED DB: PDB DBREF 4MZG A 1 20 UNP Q71DI3 H32_HUMAN 2 21 DBREF 4MZG B 50 262 UNP Q9Y657 SPIN1_HUMAN 50 262 DBREF 4MZG C 1 20 UNP Q71DI3 H32_HUMAN 2 21 DBREF 4MZG D 50 262 UNP Q9Y657 SPIN1_HUMAN 50 262 SEQADV 4MZG HIS B 41 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS B 42 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS B 43 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS B 44 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS B 45 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS B 46 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG GLY B 47 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG SER B 48 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG MET B 49 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 41 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 42 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 43 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 44 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 45 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG HIS D 46 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG GLY D 47 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG SER D 48 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZG MET D 49 UNP Q9Y657 EXPRESSION TAG SEQRES 1 A 20 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 A 20 LYS ALA PRO ARG LYS GLN LEU SEQRES 1 B 222 HIS HIS HIS HIS HIS HIS GLY SER MET ARG ARG ASN ILE SEQRES 2 B 222 VAL GLY CYS ARG ILE GLN HIS GLY TRP LYS GLU GLY ASN SEQRES 3 B 222 GLY PRO VAL THR GLN TRP LYS GLY THR VAL LEU ASP GLN SEQRES 4 B 222 VAL PRO VAL ASN PRO SER LEU TYR LEU ILE LYS TYR ASP SEQRES 5 B 222 GLY PHE ASP CYS VAL TYR GLY LEU GLU LEU ASN LYS ASP SEQRES 6 B 222 GLU ARG VAL SER ALA LEU GLU VAL LEU PRO ASP ARG VAL SEQRES 7 B 222 ALA THR SER ARG ILE SER ASP ALA HIS LEU ALA ASP THR SEQRES 8 B 222 MET ILE GLY LYS ALA VAL GLU HIS MET PHE GLU THR GLU SEQRES 9 B 222 ASP GLY SER LYS ASP GLU TRP ARG GLY MET VAL LEU ALA SEQRES 10 B 222 ARG ALA PRO VAL MET ASN THR TRP PHE TYR ILE THR TYR SEQRES 11 B 222 GLU LYS ASP PRO VAL LEU TYR MET TYR GLN LEU LEU ASP SEQRES 12 B 222 ASP TYR LYS GLU GLY ASP LEU ARG ILE MET PRO ASP SER SEQRES 13 B 222 ASN ASP SER PRO PRO ALA GLU ARG GLU PRO GLY GLU VAL SEQRES 14 B 222 VAL ASP SER LEU VAL GLY LYS GLN VAL GLU TYR ALA LYS SEQRES 15 B 222 GLU ASP GLY SER LYS ARG THR GLY MET VAL ILE HIS GLN SEQRES 16 B 222 VAL GLU ALA LYS PRO SER VAL TYR PHE ILE LYS PHE ASP SEQRES 17 B 222 ASP ASP PHE HIS ILE TYR VAL TYR ASP LEU VAL LYS THR SEQRES 18 B 222 SER SEQRES 1 C 20 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 C 20 LYS ALA PRO ARG LYS GLN LEU SEQRES 1 D 222 HIS HIS HIS HIS HIS HIS GLY SER MET ARG ARG ASN ILE SEQRES 2 D 222 VAL GLY CYS ARG ILE GLN HIS GLY TRP LYS GLU GLY ASN SEQRES 3 D 222 GLY PRO VAL THR GLN TRP LYS GLY THR VAL LEU ASP GLN SEQRES 4 D 222 VAL PRO VAL ASN PRO SER LEU TYR LEU ILE LYS TYR ASP SEQRES 5 D 222 GLY PHE ASP CYS VAL TYR GLY LEU GLU LEU ASN LYS ASP SEQRES 6 D 222 GLU ARG VAL SER ALA LEU GLU VAL LEU PRO ASP ARG VAL SEQRES 7 D 222 ALA THR SER ARG ILE SER ASP ALA HIS LEU ALA ASP THR SEQRES 8 D 222 MET ILE GLY LYS ALA VAL GLU HIS MET PHE GLU THR GLU SEQRES 9 D 222 ASP GLY SER LYS ASP GLU TRP ARG GLY MET VAL LEU ALA SEQRES 10 D 222 ARG ALA PRO VAL MET ASN THR TRP PHE TYR ILE THR TYR SEQRES 11 D 222 GLU LYS ASP PRO VAL LEU TYR MET TYR GLN LEU LEU ASP SEQRES 12 D 222 ASP TYR LYS GLU GLY ASP LEU ARG ILE MET PRO ASP SER SEQRES 13 D 222 ASN ASP SER PRO PRO ALA GLU ARG GLU PRO GLY GLU VAL SEQRES 14 D 222 VAL ASP SER LEU VAL GLY LYS GLN VAL GLU TYR ALA LYS SEQRES 15 D 222 GLU ASP GLY SER LYS ARG THR GLY MET VAL ILE HIS GLN SEQRES 16 D 222 VAL GLU ALA LYS PRO SER VAL TYR PHE ILE LYS PHE ASP SEQRES 17 D 222 ASP ASP PHE HIS ILE TYR VAL TYR ASP LEU VAL LYS THR SEQRES 18 D 222 SER MODRES 4MZG M3L A 4 LYS N-TRIMETHYLLYSINE MODRES 4MZG M3L C 4 LYS N-TRIMETHYLLYSINE HET M3L A 4 12 HET M3L C 4 12 HET MRD B 301 8 HET MPD B 302 8 HET MG B 303 1 HET CL B 304 1 HET MPD D 301 8 HET MPD D 302 8 HET CL D 303 1 HET CL D 304 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 1 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 MRD C6 H14 O2 FORMUL 6 MPD 3(C6 H14 O2) FORMUL 7 MG MG 2+ FORMUL 8 CL 3(CL 1-) FORMUL 13 HOH *360(H2 O) HELIX 1 1 ASP B 125 ILE B 133 1 9 HELIX 2 2 GLN B 180 GLU B 187 1 8 HELIX 3 3 ASP D 125 ILE D 133 1 9 HELIX 4 4 GLN D 180 GLU D 187 1 8 SHEET 1 A 5 ARG A 2 THR A 3 0 SHEET 2 A 5 ALA B 136 GLU B 142 1 O GLU B 142 N ARG A 2 SHEET 3 A 5 LYS B 148 ARG B 158 -1 O TRP B 151 N HIS B 139 SHEET 4 A 5 PHE B 166 TYR B 170 -1 O TYR B 167 N LEU B 156 SHEET 5 A 5 ASP B 173 TYR B 179 -1 O TYR B 177 N ILE B 168 SHEET 1 B 3 ARG A 2 THR A 3 0 SHEET 2 B 3 ALA B 136 GLU B 142 1 O GLU B 142 N ARG A 2 SHEET 3 B 3 LEU B 190 ILE B 192 -1 O ARG B 191 N GLU B 138 SHEET 1 C 5 TYR B 98 LEU B 100 0 SHEET 2 C 5 TYR B 87 TYR B 91 -1 N ILE B 89 O TYR B 98 SHEET 3 C 5 THR B 70 GLN B 79 -1 N LEU B 77 O LEU B 88 SHEET 4 C 5 CYS B 56 TRP B 62 -1 N TRP B 62 O THR B 70 SHEET 5 C 5 VAL B 108 ARG B 117 -1 O SER B 109 N GLY B 61 SHEET 1 D 4 GLN B 217 ALA B 221 0 SHEET 2 D 4 LYS B 227 GLN B 235 -1 O ARG B 228 N TYR B 220 SHEET 3 D 4 VAL B 242 PHE B 247 -1 O PHE B 244 N ILE B 233 SHEET 4 D 4 TYR B 254 ASP B 257 -1 O TYR B 254 N ILE B 245 SHEET 1 E 5 ARG C 2 THR C 3 0 SHEET 2 E 5 ALA D 136 GLU D 142 1 O GLU D 142 N ARG C 2 SHEET 3 E 5 LYS D 148 ARG D 158 -1 O TRP D 151 N HIS D 139 SHEET 4 E 5 PHE D 166 TYR D 170 -1 O TYR D 167 N LEU D 156 SHEET 5 E 5 ASP D 173 TYR D 179 -1 O TYR D 177 N ILE D 168 SHEET 1 F 3 ARG C 2 THR C 3 0 SHEET 2 F 3 ALA D 136 GLU D 142 1 O GLU D 142 N ARG C 2 SHEET 3 F 3 LEU D 190 ILE D 192 -1 O ARG D 191 N GLU D 138 SHEET 1 G 5 TYR D 98 LEU D 100 0 SHEET 2 G 5 ASN D 83 TYR D 91 -1 N ILE D 89 O TYR D 98 SHEET 3 G 5 THR D 70 VAL D 80 -1 N VAL D 80 O LEU D 86 SHEET 4 G 5 ARG D 57 TRP D 62 -1 N ILE D 58 O GLY D 74 SHEET 5 G 5 VAL D 108 VAL D 113 -1 O SER D 109 N GLY D 61 SHEET 1 H 4 GLN D 217 VAL D 218 0 SHEET 2 H 4 GLY D 230 GLN D 235 -1 O GLY D 230 N VAL D 218 SHEET 3 H 4 VAL D 242 LYS D 246 -1 O LYS D 246 N MET D 231 SHEET 4 H 4 TYR D 254 ASP D 257 -1 O TYR D 254 N ILE D 245 LINK C THR A 3 N M3L A 4 1555 1555 1.32 LINK C M3L A 4 N GLN A 5 1555 1555 1.33 LINK C THR C 3 N M3L C 4 1555 1555 1.32 LINK C M3L C 4 N GLN C 5 1555 1555 1.33 LINK MG MG B 303 O HOH D 422 1555 1555 2.02 LINK MG MG B 303 O HOH B 414 1555 1555 2.04 LINK MG MG B 303 O HOH B 431 1555 1555 2.04 LINK MG MG B 303 O HOH B 428 1555 1555 2.04 LINK MG MG B 303 O HOH D 421 1555 1555 2.09 LINK MG MG B 303 O HOH D 428 1555 1555 2.13 SITE 1 AC1 6 ARG A 8 TRP B 62 TRP B 72 TYR B 98 SITE 2 AC1 6 HOH B 432 HOH B 434 SITE 1 AC2 4 GLU B 171 VAL B 242 VAL B 255 ASP B 257 SITE 1 AC3 6 HOH B 414 HOH B 428 HOH B 431 HOH D 421 SITE 2 AC3 6 HOH D 422 HOH D 428 SITE 1 AC4 2 ARG B 152 LYS B 172 SITE 1 AC5 5 TRP D 62 TRP D 72 TYR D 98 LEU D 100 SITE 2 AC5 5 PHE D 251 SITE 1 AC6 4 MET D 154 GLU D 171 HOH D 502 HOH D 526 SITE 1 AC7 3 ARG B 152 ARG D 152 LYS D 172 SITE 1 AC8 1 TRP D 165 CRYST1 43.168 122.037 49.837 90.00 91.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023165 0.000000 0.000691 0.00000 SCALE2 0.000000 0.008194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020074 0.00000