HEADER OXIDOREDUCTASE 03-OCT-13 4N18 TITLE CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE TITLE 2 FAMILY PROTEIN FROM KLEBSIELLA PNEUMONIAE 342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 507522; SOURCE 4 STRAIN: 342; SOURCE 5 GENE: KPK_1152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, D-ISOMER SPECIFIC 2-HYDROXYACID KEYWDS 3 DEHYDROGENASE FAMILY PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BACAL,I.G.SHABALIN,D.R.COOPER,K.A.MAJOREK,T.OSINSKI,B.S.HILLERICH, AUTHOR 2 J.HAMMONDS,A.NAWAR,M.STEAD,S.CHOWDHURY,A.GIZZI,J.BONANNO,R.SEIDEL, AUTHOR 3 S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 2 13-APR-22 4N18 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 16-OCT-13 4N18 0 JRNL AUTH P.BACAL,I.G.SHABALIN,D.R.COOPER,K.A.MAJOREK,T.OSINSKI, JRNL AUTH 2 B.S.HILLERICH,J.HAMMONDS,A.NAWAR,M.STEAD,S.CHOWDHURY, JRNL AUTH 3 A.GIZZI,J.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID JRNL TITL 2 DEHYDROGENASE FAMILY PROTEIN FROM KLEBSIELLA PNEUMONIAE 342 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2491 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2366 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3392 ; 1.836 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5414 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;30.485 ;23.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;16.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4980 38.2720 11.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.1151 REMARK 3 T33: 0.1366 T12: -0.0346 REMARK 3 T13: -0.0026 T23: 0.0944 REMARK 3 L TENSOR REMARK 3 L11: 25.2128 L22: 12.2720 REMARK 3 L33: 4.8629 L12: -15.2179 REMARK 3 L13: 7.9982 L23: -6.9040 REMARK 3 S TENSOR REMARK 3 S11: -0.0816 S12: -0.7554 S13: -1.6326 REMARK 3 S21: 0.2566 S22: 0.4385 S23: 0.8661 REMARK 3 S31: 0.1958 S32: -0.1847 S33: -0.3569 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0960 23.5200 24.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.2261 REMARK 3 T33: 0.0929 T12: -0.0197 REMARK 3 T13: -0.0232 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.0368 L22: 2.2031 REMARK 3 L33: 3.8363 L12: -1.3256 REMARK 3 L13: -1.9790 L23: 1.1770 REMARK 3 S TENSOR REMARK 3 S11: -0.3354 S12: 0.1710 S13: -0.1962 REMARK 3 S21: 0.1176 S22: 0.0224 S23: 0.1882 REMARK 3 S31: 0.1241 S32: -0.5190 S33: 0.3130 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3760 22.4580 16.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1602 REMARK 3 T33: 0.0643 T12: -0.0362 REMARK 3 T13: -0.0420 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.8044 L22: 4.0925 REMARK 3 L33: 2.0101 L12: -2.8343 REMARK 3 L13: -0.5840 L23: 0.9153 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.3870 S13: -0.3539 REMARK 3 S21: -0.2017 S22: -0.0905 S23: 0.4331 REMARK 3 S31: -0.0860 S32: -0.2989 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8190 16.7940 27.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.2140 REMARK 3 T33: 0.0193 T12: 0.0179 REMARK 3 T13: 0.0180 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0412 L22: 1.0086 REMARK 3 L33: 3.8752 L12: -0.1412 REMARK 3 L13: 0.1099 L23: -1.5076 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.0079 S13: 0.0039 REMARK 3 S21: -0.0057 S22: -0.1076 S23: -0.0872 REMARK 3 S31: 0.1688 S32: -0.0464 S33: 0.1623 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2680 0.2410 56.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.4116 T22: 0.1672 REMARK 3 T33: 0.0905 T12: 0.0314 REMARK 3 T13: 0.1392 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.6980 L22: 1.5790 REMARK 3 L33: 1.7017 L12: 0.7496 REMARK 3 L13: -0.8271 L23: -0.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.3053 S12: -0.0938 S13: -0.1510 REMARK 3 S21: 0.1304 S22: -0.0742 S23: -0.0125 REMARK 3 S31: 0.6096 S32: 0.1547 S33: 0.3795 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8840 12.2030 39.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.1286 REMARK 3 T33: 0.0264 T12: -0.0263 REMARK 3 T13: 0.0308 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 3.3093 L22: 2.7433 REMARK 3 L33: 5.9801 L12: -1.5592 REMARK 3 L13: 0.0799 L23: 1.5803 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.1716 S13: 0.1641 REMARK 3 S21: -0.1976 S22: -0.0220 S23: -0.1457 REMARK 3 S31: -0.4450 S32: 0.3399 S33: 0.0714 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1840 0.0670 36.3220 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.1146 REMARK 3 T33: 0.0677 T12: -0.0219 REMARK 3 T13: 0.0677 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.7225 L22: 0.5297 REMARK 3 L33: 2.3010 L12: -0.2437 REMARK 3 L13: 0.3189 L23: 0.6765 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.1672 S13: -0.2415 REMARK 3 S21: -0.0853 S22: -0.1361 S23: 0.0764 REMARK 3 S31: 0.2050 S32: -0.0878 S33: 0.2011 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7920 29.1480 21.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.1388 T22: 0.1884 REMARK 3 T33: 0.2264 T12: -0.0864 REMARK 3 T13: 0.0119 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.5339 L22: 3.4654 REMARK 3 L33: 4.3833 L12: -1.7605 REMARK 3 L13: -0.7694 L23: -0.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.1519 S13: 0.5926 REMARK 3 S21: -0.1533 S22: 0.2029 S23: -0.7808 REMARK 3 S31: -0.4290 S32: 0.2765 S33: -0.2275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4N18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR. REMARK 200 LN2 COOLED FIRST CRYSTAL, REMARK 200 SAGITTAL FOCUSING 2ND CRYSTAL REMARK 200 OPTICS : ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR, WITH PT, GLASS, PD LANES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 44.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : 1.90000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 15 MG/ML PROTEIN IN 20MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5MM TCEP WERE MIXED WITH 0.2 UL OF THE MCSG-I CONDITION #88 REMARK 280 (0.1M SODIUM CITRATE:HCL PH 5.6, 20% (V/V) 2-PROPANOL, 20% (W/V) REMARK 280 PEG 4000) AND EQUILIBRATED AGAINST 1.9 M NACL IN QIAGEN EASYXTAL REMARK 280 15-WELL TOOL PLATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.64050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.28350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.32025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.28350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.96075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.28350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.28350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.32025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.28350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.28350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.96075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.64050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 101.28100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 GLY A 309 REMARK 465 TYR A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -1 CD OE1 NE2 REMARK 470 ARG A 40 CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ARG A 94 CZ NH1 NH2 REMARK 470 GLN A 169 CD OE1 NE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 470 LYS A 301 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 49.17 -80.64 REMARK 500 SER A 68 169.66 179.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 401 REMARK 610 CIT A 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-013675 RELATED DB: TARGETTRACK DBREF 4N18 A 1 310 UNP B5XVG7 B5XVG7_KLEP3 1 310 SEQADV 4N18 MSE A -21 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -20 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -19 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -18 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -17 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -16 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 HIS A -15 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 SER A -14 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 SER A -13 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 GLY A -12 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 VAL A -11 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 ASP A -10 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 LEU A -9 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 GLY A -8 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 THR A -7 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 GLU A -6 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 ASN A -5 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 LEU A -4 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 TYR A -3 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 PHE A -2 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 GLN A -1 UNP B5XVG7 EXPRESSION TAG SEQADV 4N18 SER A 0 UNP B5XVG7 EXPRESSION TAG SEQRES 1 A 332 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 332 GLY THR GLU ASN LEU TYR PHE GLN SER MSE SER ASP ILE SEQRES 3 A 332 THR ILE VAL VAL ASP CYS ASN ASP ALA ASP PHE ALA ARG SEQRES 4 A 332 ASP ILE CYS ALA ALA LEU GLN GLN PHE PRO ASP VAL THR SEQRES 5 A 332 ALA LEU LEU PRO HIS HIS GLN ALA ALA ARG ASP ALA GLN SEQRES 6 A 332 TYR ALA SER CYS TRP PHE PRO ASP PRO GLN LEU LEU SER SEQRES 7 A 332 ARG SER PRO GLY LEU LYS LEU ILE GLN ALA ALA SER ALA SEQRES 8 A 332 GLY VAL ASP HIS LEU PRO PRO ALA LEU PHE ALA SER GLU SEQRES 9 A 332 ILE PRO LEU CYS ARG VAL ILE ASP GLU ASP PHE ARG HIS SEQRES 10 A 332 GLY MSE PHE GLU TYR ALA LEU TRP SER VAL LEU TRP PHE SEQRES 11 A 332 GLN ARG HIS PHE ASP ARG ALA LEU ALA HIS GLN ARG THR SEQRES 12 A 332 GLN THR TRP LYS LEU TYR PRO GLN ARG ALA ALA ALA ASP SEQRES 13 A 332 PHE HIS ILE GLY ILE MSE GLY LEU GLY GLU ILE GLY GLY SEQRES 14 A 332 TYR ILE ALA ASP GLN LEU ALA ARG LEU GLY TYR ARG VAL SEQRES 15 A 332 SER GLY TRP SER ARG SER GLU LYS GLN LEU ALA GLY VAL SEQRES 16 A 332 THR CYS TYR ARG GLY GLU GLU ALA LEU ASP HIS PHE LEU SEQRES 17 A 332 GLY SER LEU ASP GLY LEU ILE ASN LEU LEU PRO LEU THR SEQRES 18 A 332 ALA GLN THR ARG GLY ILE LEU ALA ALA PRO LEU PHE ASN SEQRES 19 A 332 ARG LEU PRO ALA GLY ALA VAL LEU ILE ASN CYS GLY ARG SEQRES 20 A 332 GLY GLU HIS MSE VAL ASN ASP ASP VAL LEU ALA ALA LEU SEQRES 21 A 332 GLU SER GLY GLN LEU ALA GLY ALA VAL LEU ASP VAL PHE SEQRES 22 A 332 PRO GLN GLU PRO LEU PRO ALA ASP ASP PRO LEU TRP ARG SEQRES 23 A 332 HIS PRO GLN VAL VAL ILE THR PRO HIS MSE ALA SER ALA SEQRES 24 A 332 ALA PRO ALA GLU VAL ILE ALA ARG GLN LEU LEU GLU ASN SEQRES 25 A 332 ILE GLN ARG GLN ARG ARG GLY LEU PRO LEU LYS ASN LEU SEQRES 26 A 332 VAL ASN LYS HIS ALA GLY TYR MODRES 4N18 MSE A 1 MET SELENOMETHIONINE MODRES 4N18 MSE A 97 MET SELENOMETHIONINE MODRES 4N18 MSE A 140 MET SELENOMETHIONINE MODRES 4N18 MSE A 229 MET SELENOMETHIONINE MODRES 4N18 MSE A 274 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 97 8 HET MSE A 140 8 HET MSE A 229 8 HET MSE A 274 8 HET PE4 A 401 15 HET CIT A 402 11 HETNAM MSE SELENOMETHIONINE HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM CIT CITRIC ACID HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 PE4 C16 H34 O8 FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *113(H2 O) HELIX 1 1 ASP A 12 GLN A 25 1 14 HELIX 2 2 HIS A 36 ALA A 42 5 7 HELIX 3 3 GLN A 53 SER A 58 1 6 HELIX 4 4 PRO A 75 SER A 81 1 7 HELIX 5 5 ASP A 90 ARG A 110 1 21 HELIX 6 6 HIS A 111 ARG A 120 1 10 HELIX 7 7 ALA A 131 ASP A 134 5 4 HELIX 8 8 GLY A 143 LEU A 156 1 14 HELIX 9 9 ALA A 181 GLY A 187 1 7 HELIX 10 10 ALA A 207 ASN A 212 1 6 HELIX 11 11 ARG A 225 MSE A 229 5 5 HELIX 12 12 VAL A 230 GLY A 241 1 12 HELIX 13 13 ASP A 260 HIS A 265 5 6 HELIX 14 14 PRO A 279 ARG A 296 1 18 SHEET 1 A 5 VAL A 29 LEU A 32 0 SHEET 2 A 5 ILE A 4 CYS A 10 1 N ILE A 6 O LEU A 32 SHEET 3 A 5 TYR A 44 TRP A 48 1 O TYR A 44 N VAL A 7 SHEET 4 A 5 LEU A 63 ALA A 66 1 O GLN A 65 N CYS A 47 SHEET 5 A 5 LEU A 85 ARG A 87 1 O CYS A 86 N ALA A 66 SHEET 1 B 7 THR A 174 ARG A 177 0 SHEET 2 B 7 ARG A 159 SER A 164 1 N GLY A 162 O TYR A 176 SHEET 3 B 7 HIS A 136 MSE A 140 1 N ILE A 137 O ARG A 159 SHEET 4 B 7 GLY A 191 ASN A 194 1 O ILE A 193 N GLY A 138 SHEET 5 B 7 ALA A 218 ASN A 222 1 O ILE A 221 N ASN A 194 SHEET 6 B 7 LEU A 243 LEU A 248 1 O ALA A 244 N ALA A 218 SHEET 7 B 7 VAL A 268 ILE A 270 1 O VAL A 269 N LEU A 248 LINK C SER A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N SER A 2 1555 1555 1.32 LINK C GLY A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N PHE A 98 1555 1555 1.34 LINK C ILE A 139 N MSE A 140 1555 1555 1.32 LINK C MSE A 140 N GLY A 141 1555 1555 1.33 LINK C HIS A 228 N MSE A 229 1555 1555 1.32 LINK C MSE A 229 N VAL A 230 1555 1555 1.32 LINK C HIS A 273 N MSE A 274 1555 1555 1.35 LINK C MSE A 274 N ALA A 275 1555 1555 1.33 CISPEP 1 GLU A 254 PRO A 255 0 -6.18 SITE 1 AC1 6 ASP A 28 GLU A 180 ASP A 183 GLN A 292 SITE 2 AC1 6 ARG A 295 ARG A 296 SITE 1 AC2 5 LEU A 142 SER A 164 ARG A 165 SER A 166 SITE 2 AC2 5 LYS A 168 CRYST1 76.567 76.567 101.281 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013060 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009874 0.00000