data_4N1T # _entry.id 4N1T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4N1T pdb_00004n1t 10.2210/pdb4n1t/pdb RCSB RCSB082644 ? ? WWPDB D_1000082644 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ZR0 'Apo MTH1' unspecified PDB 3ZR1 'MTH1 in complex with 8-oxo-dGMP' unspecified PDB 4N1U 'MTH1 in complex with TH588' unspecified # _pdbx_database_status.entry_id 4N1T _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Berntsson, R.P.-A.' 1 'Jemth, A.' 2 'Gustafsson, R.' 3 'Svensson, L.M.' 4 'Helleday, T.' 5 'Stenmark, P.' 6 # _citation.id primary _citation.title 'MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool.' _citation.journal_abbrev Nature _citation.journal_volume 508 _citation.page_first 215 _citation.page_last 221 _citation.year 2014 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24695224 _citation.pdbx_database_id_DOI 10.1038/nature13181 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gad, H.' 1 ? primary 'Koolmeister, T.' 2 ? primary 'Jemth, A.S.' 3 ? primary 'Eshtad, S.' 4 ? primary 'Jacques, S.A.' 5 ? primary 'Strom, C.E.' 6 ? primary 'Svensson, L.M.' 7 ? primary 'Schultz, N.' 8 ? primary 'Lundback, T.' 9 ? primary 'Einarsdottir, B.O.' 10 ? primary 'Saleh, A.' 11 ? primary 'Gokturk, C.' 12 ? primary 'Baranczewski, P.' 13 ? primary 'Svensson, R.' 14 ? primary 'Berntsson, R.P.' 15 ? primary 'Gustafsson, R.' 16 ? primary 'Stromberg, K.' 17 ? primary 'Sanjiv, K.' 18 ? primary 'Jacques-Cordonnier, M.C.' 19 ? primary 'Desroses, M.' 20 ? primary 'Gustavsson, A.L.' 21 ? primary 'Olofsson, R.' 22 ? primary 'Johansson, F.' 23 ? primary 'Homan, E.J.' 24 ? primary 'Loseva, O.' 25 ? primary 'Brautigam, L.' 26 ? primary 'Johansson, L.' 27 ? primary 'Hoglund, A.' 28 ? primary 'Hagenkort, A.' 29 ? primary 'Pham, T.' 30 ? primary 'Altun, M.' 31 ? primary 'Gaugaz, F.Z.' 32 ? primary 'Vikingsson, S.' 33 ? primary 'Evers, B.' 34 ? primary 'Henriksson, M.' 35 ? primary 'Vallin, K.S.' 36 ? primary 'Wallner, O.A.' 37 ? primary 'Hammarstrom, L.G.' 38 ? primary 'Wiita, E.' 39 ? primary 'Almlof, I.' 40 ? primary 'Kalderen, C.' 41 ? primary 'Axelsson, H.' 42 ? primary 'Djureinovic, T.' 43 ? primary 'Puigvert, J.C.' 44 ? primary 'Haggblad, M.' 45 ? primary 'Jeppsson, F.' 46 ? primary 'Martens, U.' 47 ? primary 'Lundin, C.' 48 ? primary 'Lundgren, B.' 49 ? primary 'Granelli, I.' 50 ? primary 'Jensen, A.J.' 51 ? primary 'Artursson, P.' 52 ? primary 'Nilsson, J.A.' 53 ? primary 'Stenmark, P.' 54 ? primary 'Scobie, M.' 55 ? primary 'Berglund, U.W.' 56 ? primary 'Helleday, T.' 57 ? # _cell.entry_id 4N1T _cell.length_a 60.378 _cell.length_b 66.321 _cell.length_c 36.136 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4N1T _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '7,8-dihydro-8-oxoguanine triphosphatase' 18253.736 1 '3.6.1.55, 3.6.1.56' ? ? ? 2 non-polymer syn '6-(2,3-dichlorophenyl)-N~4~-methylpyrimidine-2,4-diamine' 269.130 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 water nat water 18.015 138 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '2-hydroxy-dATP diphosphatase, 8-oxo-dGTPase, Nucleoside diphosphate-linked moiety X motif 1, Nudix motif 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGE PELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGE PELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 ALA n 1 7 SER n 1 8 ARG n 1 9 LEU n 1 10 TYR n 1 11 THR n 1 12 LEU n 1 13 VAL n 1 14 LEU n 1 15 VAL n 1 16 LEU n 1 17 GLN n 1 18 PRO n 1 19 GLN n 1 20 ARG n 1 21 VAL n 1 22 LEU n 1 23 LEU n 1 24 GLY n 1 25 MET n 1 26 LYS n 1 27 LYS n 1 28 ARG n 1 29 GLY n 1 30 PHE n 1 31 GLY n 1 32 ALA n 1 33 GLY n 1 34 ARG n 1 35 TRP n 1 36 ASN n 1 37 GLY n 1 38 PHE n 1 39 GLY n 1 40 GLY n 1 41 LYS n 1 42 VAL n 1 43 GLN n 1 44 GLU n 1 45 GLY n 1 46 GLU n 1 47 THR n 1 48 ILE n 1 49 GLU n 1 50 ASP n 1 51 GLY n 1 52 ALA n 1 53 ARG n 1 54 ARG n 1 55 GLU n 1 56 LEU n 1 57 GLN n 1 58 GLU n 1 59 GLU n 1 60 SER n 1 61 GLY n 1 62 LEU n 1 63 THR n 1 64 VAL n 1 65 ASP n 1 66 ALA n 1 67 LEU n 1 68 HIS n 1 69 LYS n 1 70 VAL n 1 71 GLY n 1 72 GLN n 1 73 ILE n 1 74 VAL n 1 75 PHE n 1 76 GLU n 1 77 PHE n 1 78 VAL n 1 79 GLY n 1 80 GLU n 1 81 PRO n 1 82 GLU n 1 83 LEU n 1 84 MET n 1 85 ASP n 1 86 VAL n 1 87 HIS n 1 88 VAL n 1 89 PHE n 1 90 CYS n 1 91 THR n 1 92 ASP n 1 93 SER n 1 94 ILE n 1 95 GLN n 1 96 GLY n 1 97 THR n 1 98 PRO n 1 99 VAL n 1 100 GLU n 1 101 SER n 1 102 ASP n 1 103 GLU n 1 104 MET n 1 105 ARG n 1 106 PRO n 1 107 CYS n 1 108 TRP n 1 109 PHE n 1 110 GLN n 1 111 LEU n 1 112 ASP n 1 113 GLN n 1 114 ILE n 1 115 PRO n 1 116 PHE n 1 117 LYS n 1 118 ASP n 1 119 MET n 1 120 TRP n 1 121 PRO n 1 122 ASP n 1 123 ASP n 1 124 SER n 1 125 TYR n 1 126 TRP n 1 127 PHE n 1 128 PRO n 1 129 LEU n 1 130 LEU n 1 131 LEU n 1 132 GLN n 1 133 LYS n 1 134 LYS n 1 135 LYS n 1 136 PHE n 1 137 HIS n 1 138 GLY n 1 139 TYR n 1 140 PHE n 1 141 LYS n 1 142 PHE n 1 143 GLN n 1 144 GLY n 1 145 GLN n 1 146 ASP n 1 147 THR n 1 148 ILE n 1 149 LEU n 1 150 ASP n 1 151 TYR n 1 152 THR n 1 153 LEU n 1 154 ARG n 1 155 GLU n 1 156 VAL n 1 157 ASP n 1 158 THR n 1 159 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NUDT1, MTH1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code 8ODP_HUMAN _struct_ref.pdbx_db_accession P36639 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL MDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ; _struct_ref.pdbx_align_begin 42 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4N1T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36639 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4N1T GLY A 1 ? UNP P36639 ? ? 'expression tag' -2 1 1 4N1T SER A 2 ? UNP P36639 ? ? 'expression tag' -1 2 1 4N1T HIS A 3 ? UNP P36639 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2GD non-polymer . '6-(2,3-dichlorophenyl)-N~4~-methylpyrimidine-2,4-diamine' ? 'C11 H10 Cl2 N4' 269.130 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4N1T _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '32% PEG 6000, 0.1 M Sodium Acetate pH 3.5, 0.2 M Lithium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2012-06-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 # _reflns.entry_id 4N1T _reflns.d_resolution_high 1.584 _reflns.d_resolution_low 44.647 _reflns.number_all 19801 _reflns.number_obs 19801 _reflns.pdbx_netI_over_sigmaI 14.700 _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_redundancy 4.800 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.600 1.690 ? 13210 ? 0.415 1.800 0.415 ? 4.700 ? 2796 99.400 1 1 1.690 1.790 ? 13147 ? 0.281 2.600 0.281 ? 4.800 ? 2713 100.000 2 1 1.790 1.910 ? 12224 ? 0.178 4.100 0.178 ? 4.800 ? 2524 100.000 3 1 1.910 2.070 ? 11491 ? 0.109 6.600 0.109 ? 4.900 ? 2365 100.000 4 1 2.070 2.260 ? 10626 ? 0.075 9.100 0.075 ? 4.800 ? 2202 100.000 5 1 2.260 2.530 ? 9547 ? 0.062 10.600 0.062 ? 4.800 ? 1983 100.000 6 1 2.530 2.920 ? 8487 ? 0.047 13.000 0.047 ? 4.800 ? 1768 100.000 7 1 2.920 3.580 ? 7271 ? 0.035 15.400 0.035 ? 4.800 ? 1527 100.000 8 1 3.580 5.060 ? 5573 ? 0.030 12.200 0.030 ? 4.600 ? 1205 100.000 9 1 5.060 44.647 ? 3031 ? 0.029 11.000 0.029 ? 4.200 ? 718 99.800 10 1 # _refine.entry_id 4N1T _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 44.647 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8700 _refine.ls_number_reflns_obs 19763 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1769 _refine.ls_R_factor_R_work 0.1751 _refine.ls_wR_factor_R_work 0.1694 _refine.ls_R_factor_R_free 0.2093 _refine.ls_wR_factor_R_free 0.2041 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 986 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.7065 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.2200 _refine.aniso_B[2][2] 0.1100 _refine.aniso_B[3][3] 1.1100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9480 _refine.overall_SU_R_Cruickshank_DPI 0.0966 _refine.overall_SU_R_free 0.0956 _refine.pdbx_overall_ESU_R 0.0970 _refine.pdbx_overall_ESU_R_Free 0.0960 _refine.overall_SU_ML 0.0630 _refine.overall_SU_B 3.5690 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3ZR1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8754 _refine.B_iso_max 81.580 _refine.B_iso_min 6.990 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1254 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 1429 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 44.647 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1375 0.012 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1257 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1870 1.530 1.980 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2900 0.733 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 165 6.280 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 68 33.075 24.265 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 233 12.934 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 9.428 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 191 0.094 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1578 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 334 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6000 _refine_ls_shell.d_res_low 1.6420 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.6100 _refine_ls_shell.number_reflns_R_work 1347 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2470 _refine_ls_shell.R_factor_R_free 0.3020 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1418 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4N1T _struct.title 'Structure of human MTH1 in complex with TH287' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4N1T _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Oxidised nucleotide degradation, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 47 ? GLY A 61 ? THR A 44 GLY A 58 1 ? 15 HELX_P HELX_P2 2 ASP A 112 ? ILE A 114 ? ASP A 109 ILE A 111 5 ? 3 HELX_P HELX_P3 3 PRO A 115 ? MET A 119 ? PRO A 112 MET A 116 5 ? 5 HELX_P HELX_P4 4 TRP A 120 ? PRO A 121 ? TRP A 117 PRO A 118 5 ? 2 HELX_P HELX_P5 5 ASP A 122 ? GLN A 132 ? ASP A 119 GLN A 129 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 35 ? ASN A 36 ? TRP A 32 ASN A 33 A 2 ARG A 20 ? LYS A 26 ? ARG A 17 LYS A 23 A 3 SER A 7 ? LEU A 16 ? SER A 4 LEU A 13 A 4 MET A 104 ? GLN A 110 ? MET A 101 GLN A 107 B 1 PHE A 38 ? LYS A 41 ? PHE A 35 LYS A 38 B 2 SER A 7 ? LEU A 16 ? SER A 4 LEU A 13 B 3 ARG A 20 ? LYS A 26 ? ARG A 17 LYS A 23 B 4 LEU A 83 ? THR A 91 ? LEU A 80 THR A 88 B 5 HIS A 68 ? PHE A 77 ? HIS A 65 PHE A 74 B 6 LYS A 135 ? GLN A 143 ? LYS A 132 GLN A 140 B 7 THR A 147 ? VAL A 156 ? THR A 144 VAL A 153 C 1 THR A 63 ? VAL A 64 ? THR A 60 VAL A 61 C 2 ILE A 94 ? GLN A 95 ? ILE A 91 GLN A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 36 ? O ASN A 33 N GLY A 24 ? N GLY A 21 A 2 3 O LEU A 22 ? O LEU A 19 N VAL A 15 ? N VAL A 12 B 1 2 O PHE A 38 ? O PHE A 35 N VAL A 13 ? N VAL A 10 B 2 3 N VAL A 15 ? N VAL A 12 O LEU A 22 ? O LEU A 19 B 4 5 O VAL A 88 ? O VAL A 85 N GLY A 71 ? N GLY A 68 B 5 6 N GLU A 76 ? N GLU A 73 O PHE A 142 ? O PHE A 139 B 6 7 N LYS A 141 ? N LYS A 138 O ASP A 150 ? O ASP A 147 C 1 2 N THR A 63 ? N THR A 60 O GLN A 95 ? O GLN A 92 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2GD 201 ? 10 'BINDING SITE FOR RESIDUE 2GD A 201' AC2 Software A SO4 202 ? 4 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software A SO4 203 ? 7 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software A SO4 204 ? 6 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software A SO4 205 ? 7 'BINDING SITE FOR RESIDUE SO4 A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 THR A 11 ? THR A 8 . ? 1_555 ? 2 AC1 10 ASN A 36 ? ASN A 33 . ? 1_555 ? 3 AC1 10 GLY A 39 ? GLY A 36 . ? 1_555 ? 4 AC1 10 GLY A 40 ? GLY A 37 . ? 1_555 ? 5 AC1 10 PHE A 75 ? PHE A 72 . ? 1_555 ? 6 AC1 10 PHE A 77 ? PHE A 74 . ? 1_555 ? 7 AC1 10 VAL A 86 ? VAL A 83 . ? 1_555 ? 8 AC1 10 TRP A 120 ? TRP A 117 . ? 1_555 ? 9 AC1 10 ASP A 122 ? ASP A 119 . ? 1_555 ? 10 AC1 10 ASP A 123 ? ASP A 120 . ? 1_555 ? 11 AC2 4 HIS A 68 ? HIS A 65 . ? 1_555 ? 12 AC2 4 LYS A 69 ? LYS A 66 . ? 1_555 ? 13 AC2 4 HOH G . ? HOH A 423 . ? 1_555 ? 14 AC2 4 HOH G . ? HOH A 428 . ? 1_555 ? 15 AC3 7 LYS A 141 ? LYS A 138 . ? 2_655 ? 16 AC3 7 LYS A 141 ? LYS A 138 . ? 1_555 ? 17 AC3 7 LEU A 149 ? LEU A 146 . ? 1_555 ? 18 AC3 7 ASP A 150 ? ASP A 147 . ? 2_655 ? 19 AC3 7 ASP A 150 ? ASP A 147 . ? 1_555 ? 20 AC3 7 HOH G . ? HOH A 346 . ? 3_555 ? 21 AC3 7 HOH G . ? HOH A 346 . ? 4_545 ? 22 AC4 6 ALA A 66 ? ALA A 63 . ? 1_555 ? 23 AC4 6 HIS A 68 ? HIS A 65 . ? 1_555 ? 24 AC4 6 THR A 91 ? THR A 88 . ? 1_555 ? 25 AC4 6 ASP A 92 ? ASP A 89 . ? 1_555 ? 26 AC4 6 SER A 93 ? SER A 90 . ? 1_555 ? 27 AC4 6 HOH G . ? HOH A 425 . ? 1_556 ? 28 AC5 7 ARG A 20 ? ARG A 17 . ? 3_556 ? 29 AC5 7 THR A 97 ? THR A 94 . ? 3_556 ? 30 AC5 7 PRO A 98 ? PRO A 95 . ? 3_556 ? 31 AC5 7 TRP A 108 ? TRP A 105 . ? 3_556 ? 32 AC5 7 ARG A 154 ? ARG A 151 . ? 1_555 ? 33 AC5 7 HOH G . ? HOH A 333 . ? 1_555 ? 34 AC5 7 HOH G . ? HOH A 337 . ? 3_556 ? # _atom_sites.entry_id 4N1T _atom_sites.fract_transf_matrix[1][1] 0.016562 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015078 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027673 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 GLY 5 2 ? ? ? A . n A 1 6 ALA 6 3 3 ALA ALA A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 TYR 10 7 7 TYR TYR A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 GLN 17 14 14 GLN GLN A . n A 1 18 PRO 18 15 15 PRO PRO A . n A 1 19 GLN 19 16 16 GLN GLN A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 MET 25 22 22 MET MET A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 TRP 35 32 32 TRP TRP A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 GLN 43 40 40 GLN GLN A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 THR 47 44 44 THR THR A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 GLU 55 52 52 GLU GLU A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 GLN 57 54 54 GLN GLN A . n A 1 58 GLU 58 55 55 GLU GLU A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 GLY 61 58 58 GLY GLY A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 LYS 69 66 66 LYS LYS A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 GLU 76 73 73 GLU GLU A . n A 1 77 PHE 77 74 74 PHE PHE A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 MET 84 81 81 MET MET A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 HIS 87 84 84 HIS HIS A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 PHE 89 86 86 PHE PHE A . n A 1 90 CYS 90 87 87 CYS CYS A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 PRO 98 95 95 PRO PRO A . n A 1 99 VAL 99 96 96 VAL VAL A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 SER 101 98 98 SER SER A . n A 1 102 ASP 102 99 99 ASP ASP A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 MET 104 101 101 MET MET A . n A 1 105 ARG 105 102 102 ARG ARG A . n A 1 106 PRO 106 103 103 PRO PRO A . n A 1 107 CYS 107 104 104 CYS CYS A . n A 1 108 TRP 108 105 105 TRP TRP A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 ASP 112 109 109 ASP ASP A . n A 1 113 GLN 113 110 110 GLN GLN A . n A 1 114 ILE 114 111 111 ILE ILE A . n A 1 115 PRO 115 112 112 PRO PRO A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 LYS 117 114 114 LYS LYS A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 MET 119 116 116 MET MET A . n A 1 120 TRP 120 117 117 TRP TRP A . n A 1 121 PRO 121 118 118 PRO PRO A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 ASP 123 120 120 ASP ASP A . n A 1 124 SER 124 121 121 SER SER A . n A 1 125 TYR 125 122 122 TYR TYR A . n A 1 126 TRP 126 123 123 TRP TRP A . n A 1 127 PHE 127 124 124 PHE PHE A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 LEU 130 127 127 LEU LEU A . n A 1 131 LEU 131 128 128 LEU LEU A . n A 1 132 GLN 132 129 129 GLN GLN A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 PHE 136 133 133 PHE PHE A . n A 1 137 HIS 137 134 134 HIS HIS A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 PHE 140 137 137 PHE PHE A . n A 1 141 LYS 141 138 138 LYS LYS A . n A 1 142 PHE 142 139 139 PHE PHE A . n A 1 143 GLN 143 140 140 GLN GLN A . n A 1 144 GLY 144 141 141 GLY GLY A . n A 1 145 GLN 145 142 142 GLN GLN A . n A 1 146 ASP 146 143 143 ASP ASP A . n A 1 147 THR 147 144 144 THR THR A . n A 1 148 ILE 148 145 145 ILE ILE A . n A 1 149 LEU 149 146 146 LEU LEU A . n A 1 150 ASP 150 147 147 ASP ASP A . n A 1 151 TYR 151 148 148 TYR TYR A . n A 1 152 THR 152 149 149 THR THR A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 ARG 154 151 151 ARG ARG A . n A 1 155 GLU 155 152 152 GLU GLU A . n A 1 156 VAL 156 153 153 VAL VAL A . n A 1 157 ASP 157 154 154 ASP ASP A . n A 1 158 THR 158 155 155 THR THR A . n A 1 159 VAL 159 156 156 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2GD 1 201 1 2GD LIG A . C 3 SO4 1 202 1 SO4 SO4 A . D 3 SO4 1 203 3 SO4 SO4 A . E 3 SO4 1 204 4 SO4 SO4 A . F 3 SO4 1 205 5 SO4 SO4 A . G 4 HOH 1 301 1 HOH HOH A . G 4 HOH 2 302 2 HOH HOH A . G 4 HOH 3 303 3 HOH HOH A . G 4 HOH 4 304 4 HOH HOH A . G 4 HOH 5 305 5 HOH HOH A . G 4 HOH 6 306 6 HOH HOH A . G 4 HOH 7 307 7 HOH HOH A . G 4 HOH 8 308 8 HOH HOH A . G 4 HOH 9 309 9 HOH HOH A . G 4 HOH 10 310 10 HOH HOH A . G 4 HOH 11 311 11 HOH HOH A . G 4 HOH 12 312 12 HOH HOH A . G 4 HOH 13 313 13 HOH HOH A . G 4 HOH 14 314 14 HOH HOH A . G 4 HOH 15 315 15 HOH HOH A . G 4 HOH 16 316 16 HOH HOH A . G 4 HOH 17 317 17 HOH HOH A . G 4 HOH 18 318 18 HOH HOH A . G 4 HOH 19 319 19 HOH HOH A . G 4 HOH 20 320 20 HOH HOH A . G 4 HOH 21 321 21 HOH HOH A . G 4 HOH 22 322 22 HOH HOH A . G 4 HOH 23 323 23 HOH HOH A . G 4 HOH 24 324 24 HOH HOH A . G 4 HOH 25 325 25 HOH HOH A . G 4 HOH 26 326 26 HOH HOH A . G 4 HOH 27 327 27 HOH HOH A . G 4 HOH 28 328 28 HOH HOH A . G 4 HOH 29 329 29 HOH HOH A . G 4 HOH 30 330 30 HOH HOH A . G 4 HOH 31 331 31 HOH HOH A . G 4 HOH 32 332 32 HOH HOH A . G 4 HOH 33 333 33 HOH HOH A . G 4 HOH 34 334 34 HOH HOH A . G 4 HOH 35 335 35 HOH HOH A . G 4 HOH 36 336 36 HOH HOH A . G 4 HOH 37 337 37 HOH HOH A . G 4 HOH 38 338 38 HOH HOH A . G 4 HOH 39 339 39 HOH HOH A . G 4 HOH 40 340 40 HOH HOH A . G 4 HOH 41 341 41 HOH HOH A . G 4 HOH 42 342 42 HOH HOH A . G 4 HOH 43 343 43 HOH HOH A . G 4 HOH 44 344 44 HOH HOH A . G 4 HOH 45 345 45 HOH HOH A . G 4 HOH 46 346 46 HOH HOH A . G 4 HOH 47 347 47 HOH HOH A . G 4 HOH 48 348 48 HOH HOH A . G 4 HOH 49 349 49 HOH HOH A . G 4 HOH 50 350 50 HOH HOH A . G 4 HOH 51 351 51 HOH HOH A . G 4 HOH 52 352 52 HOH HOH A . G 4 HOH 53 353 53 HOH HOH A . G 4 HOH 54 354 54 HOH HOH A . G 4 HOH 55 355 55 HOH HOH A . G 4 HOH 56 356 56 HOH HOH A . G 4 HOH 57 357 57 HOH HOH A . G 4 HOH 58 358 58 HOH HOH A . G 4 HOH 59 359 59 HOH HOH A . G 4 HOH 60 360 60 HOH HOH A . G 4 HOH 61 361 61 HOH HOH A . G 4 HOH 62 362 62 HOH HOH A . G 4 HOH 63 363 63 HOH HOH A . G 4 HOH 64 364 64 HOH HOH A . G 4 HOH 65 365 65 HOH HOH A . G 4 HOH 66 366 66 HOH HOH A . G 4 HOH 67 367 67 HOH HOH A . G 4 HOH 68 368 68 HOH HOH A . G 4 HOH 69 369 69 HOH HOH A . G 4 HOH 70 370 70 HOH HOH A . G 4 HOH 71 371 71 HOH HOH A . G 4 HOH 72 372 72 HOH HOH A . G 4 HOH 73 373 73 HOH HOH A . G 4 HOH 74 374 74 HOH HOH A . G 4 HOH 75 375 75 HOH HOH A . G 4 HOH 76 376 76 HOH HOH A . G 4 HOH 77 377 77 HOH HOH A . G 4 HOH 78 378 78 HOH HOH A . G 4 HOH 79 379 79 HOH HOH A . G 4 HOH 80 380 80 HOH HOH A . G 4 HOH 81 381 81 HOH HOH A . G 4 HOH 82 382 82 HOH HOH A . G 4 HOH 83 383 83 HOH HOH A . G 4 HOH 84 384 84 HOH HOH A . G 4 HOH 85 385 85 HOH HOH A . G 4 HOH 86 386 86 HOH HOH A . G 4 HOH 87 387 87 HOH HOH A . G 4 HOH 88 388 88 HOH HOH A . G 4 HOH 89 389 89 HOH HOH A . G 4 HOH 90 390 90 HOH HOH A . G 4 HOH 91 391 91 HOH HOH A . G 4 HOH 92 392 92 HOH HOH A . G 4 HOH 93 393 93 HOH HOH A . G 4 HOH 94 394 94 HOH HOH A . G 4 HOH 95 395 95 HOH HOH A . G 4 HOH 96 396 96 HOH HOH A . G 4 HOH 97 397 97 HOH HOH A . G 4 HOH 98 398 98 HOH HOH A . G 4 HOH 99 399 99 HOH HOH A . G 4 HOH 100 400 100 HOH HOH A . G 4 HOH 101 401 101 HOH HOH A . G 4 HOH 102 402 102 HOH HOH A . G 4 HOH 103 403 103 HOH HOH A . G 4 HOH 104 404 104 HOH HOH A . G 4 HOH 105 405 105 HOH HOH A . G 4 HOH 106 406 106 HOH HOH A . G 4 HOH 107 407 107 HOH HOH A . G 4 HOH 108 408 108 HOH HOH A . G 4 HOH 109 409 109 HOH HOH A . G 4 HOH 110 410 110 HOH HOH A . G 4 HOH 111 411 111 HOH HOH A . G 4 HOH 112 412 112 HOH HOH A . G 4 HOH 113 413 113 HOH HOH A . G 4 HOH 114 414 114 HOH HOH A . G 4 HOH 115 415 115 HOH HOH A . G 4 HOH 116 416 116 HOH HOH A . G 4 HOH 117 417 117 HOH HOH A . G 4 HOH 118 418 118 HOH HOH A . G 4 HOH 119 419 119 HOH HOH A . G 4 HOH 120 420 120 HOH HOH A . G 4 HOH 121 421 121 HOH HOH A . G 4 HOH 122 422 122 HOH HOH A . G 4 HOH 123 423 123 HOH HOH A . G 4 HOH 124 424 124 HOH HOH A . G 4 HOH 125 425 125 HOH HOH A . G 4 HOH 126 426 126 HOH HOH A . G 4 HOH 127 427 127 HOH HOH A . G 4 HOH 128 428 128 HOH HOH A . G 4 HOH 129 429 129 HOH HOH A . G 4 HOH 130 430 130 HOH HOH A . G 4 HOH 131 431 131 HOH HOH A . G 4 HOH 132 432 132 HOH HOH A . G 4 HOH 133 433 133 HOH HOH A . G 4 HOH 134 434 134 HOH HOH A . G 4 HOH 135 435 135 HOH HOH A . G 4 HOH 136 436 136 HOH HOH A . G 4 HOH 137 437 137 HOH HOH A . G 4 HOH 138 438 138 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 203 ? D SO4 . 2 1 A HOH 372 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2014-06-11 3 'Structure model' 1 2 2015-08-05 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.3592 _pdbx_refine_tls.origin_y -13.1638 _pdbx_refine_tls.origin_z 9.3172 _pdbx_refine_tls.T[1][1] 0.0794 _pdbx_refine_tls.T[2][2] 0.0201 _pdbx_refine_tls.T[3][3] 0.0027 _pdbx_refine_tls.T[1][2] 0.0097 _pdbx_refine_tls.T[1][3] -0.0076 _pdbx_refine_tls.T[2][3] 0.0004 _pdbx_refine_tls.L[1][1] 1.2779 _pdbx_refine_tls.L[2][2] 1.2531 _pdbx_refine_tls.L[3][3] 0.6946 _pdbx_refine_tls.L[1][2] 0.5004 _pdbx_refine_tls.L[1][3] -0.1973 _pdbx_refine_tls.L[2][3] -0.1731 _pdbx_refine_tls.S[1][1] 0.0312 _pdbx_refine_tls.S[2][2] -0.0055 _pdbx_refine_tls.S[3][3] -0.0257 _pdbx_refine_tls.S[1][2] -0.0666 _pdbx_refine_tls.S[1][3] -0.0231 _pdbx_refine_tls.S[2][3] 0.0112 _pdbx_refine_tls.S[2][1] 0.0476 _pdbx_refine_tls.S[3][1] 0.0081 _pdbx_refine_tls.S[3][2] -0.0219 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 3 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 156 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XSCALE . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 62 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 436 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.90 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 62 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -90.46 _pdbx_validate_torsion.psi -91.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A GLY 2 ? A GLY 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2GD C13 C Y N 1 2GD N01 N N N 2 2GD C02 C Y N 3 2GD N03 N Y N 4 2GD C04 C Y N 5 2GD C05 C Y N 6 2GD C06 C Y N 7 2GD C07 C Y N 8 2GD C08 C Y N 9 2GD C09 C Y N 10 2GD CL1 CL N N 11 2GD C11 C Y N 12 2GD CL2 CL N N 13 2GD C14 C Y N 14 2GD N15 N N N 15 2GD C16 C N N 16 2GD N17 N Y N 17 2GD H1 H N N 18 2GD H2 H N N 19 2GD H3 H N N 20 2GD H4 H N N 21 2GD H5 H N N 22 2GD H6 H N N 23 2GD H13 H N N 24 2GD H14 H N N 25 2GD H15 H N N 26 2GD H16 H N N 27 ALA N N N N 28 ALA CA C N S 29 ALA C C N N 30 ALA O O N N 31 ALA CB C N N 32 ALA OXT O N N 33 ALA H H N N 34 ALA H2 H N N 35 ALA HA H N N 36 ALA HB1 H N N 37 ALA HB2 H N N 38 ALA HB3 H N N 39 ALA HXT H N N 40 ARG N N N N 41 ARG CA C N S 42 ARG C C N N 43 ARG O O N N 44 ARG CB C N N 45 ARG CG C N N 46 ARG CD C N N 47 ARG NE N N N 48 ARG CZ C N N 49 ARG NH1 N N N 50 ARG NH2 N N N 51 ARG OXT O N N 52 ARG H H N N 53 ARG H2 H N N 54 ARG HA H N N 55 ARG HB2 H N N 56 ARG HB3 H N N 57 ARG HG2 H N N 58 ARG HG3 H N N 59 ARG HD2 H N N 60 ARG HD3 H N N 61 ARG HE H N N 62 ARG HH11 H N N 63 ARG HH12 H N N 64 ARG HH21 H N N 65 ARG HH22 H N N 66 ARG HXT H N N 67 ASN N N N N 68 ASN CA C N S 69 ASN C C N N 70 ASN O O N N 71 ASN CB C N N 72 ASN CG C N N 73 ASN OD1 O N N 74 ASN ND2 N N N 75 ASN OXT O N N 76 ASN H H N N 77 ASN H2 H N N 78 ASN HA H N N 79 ASN HB2 H N N 80 ASN HB3 H N N 81 ASN HD21 H N N 82 ASN HD22 H N N 83 ASN HXT H N N 84 ASP N N N N 85 ASP CA C N S 86 ASP C C N N 87 ASP O O N N 88 ASP CB C N N 89 ASP CG C N N 90 ASP OD1 O N N 91 ASP OD2 O N N 92 ASP OXT O N N 93 ASP H H N N 94 ASP H2 H N N 95 ASP HA H N N 96 ASP HB2 H N N 97 ASP HB3 H N N 98 ASP HD2 H N N 99 ASP HXT H N N 100 CYS N N N N 101 CYS CA C N R 102 CYS C C N N 103 CYS O O N N 104 CYS CB C N N 105 CYS SG S N N 106 CYS OXT O N N 107 CYS H H N N 108 CYS H2 H N N 109 CYS HA H N N 110 CYS HB2 H N N 111 CYS HB3 H N N 112 CYS HG H N N 113 CYS HXT H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 MET N N N N 257 MET CA C N S 258 MET C C N N 259 MET O O N N 260 MET CB C N N 261 MET CG C N N 262 MET SD S N N 263 MET CE C N N 264 MET OXT O N N 265 MET H H N N 266 MET H2 H N N 267 MET HA H N N 268 MET HB2 H N N 269 MET HB3 H N N 270 MET HG2 H N N 271 MET HG3 H N N 272 MET HE1 H N N 273 MET HE2 H N N 274 MET HE3 H N N 275 MET HXT H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 SO4 S S N N 331 SO4 O1 O N N 332 SO4 O2 O N N 333 SO4 O3 O N N 334 SO4 O4 O N N 335 THR N N N N 336 THR CA C N S 337 THR C C N N 338 THR O O N N 339 THR CB C N R 340 THR OG1 O N N 341 THR CG2 C N N 342 THR OXT O N N 343 THR H H N N 344 THR H2 H N N 345 THR HA H N N 346 THR HB H N N 347 THR HG1 H N N 348 THR HG21 H N N 349 THR HG22 H N N 350 THR HG23 H N N 351 THR HXT H N N 352 TRP N N N N 353 TRP CA C N S 354 TRP C C N N 355 TRP O O N N 356 TRP CB C N N 357 TRP CG C Y N 358 TRP CD1 C Y N 359 TRP CD2 C Y N 360 TRP NE1 N Y N 361 TRP CE2 C Y N 362 TRP CE3 C Y N 363 TRP CZ2 C Y N 364 TRP CZ3 C Y N 365 TRP CH2 C Y N 366 TRP OXT O N N 367 TRP H H N N 368 TRP H2 H N N 369 TRP HA H N N 370 TRP HB2 H N N 371 TRP HB3 H N N 372 TRP HD1 H N N 373 TRP HE1 H N N 374 TRP HE3 H N N 375 TRP HZ2 H N N 376 TRP HZ3 H N N 377 TRP HH2 H N N 378 TRP HXT H N N 379 TYR N N N N 380 TYR CA C N S 381 TYR C C N N 382 TYR O O N N 383 TYR CB C N N 384 TYR CG C Y N 385 TYR CD1 C Y N 386 TYR CD2 C Y N 387 TYR CE1 C Y N 388 TYR CE2 C Y N 389 TYR CZ C Y N 390 TYR OH O N N 391 TYR OXT O N N 392 TYR H H N N 393 TYR H2 H N N 394 TYR HA H N N 395 TYR HB2 H N N 396 TYR HB3 H N N 397 TYR HD1 H N N 398 TYR HD2 H N N 399 TYR HE1 H N N 400 TYR HE2 H N N 401 TYR HH H N N 402 TYR HXT H N N 403 VAL N N N N 404 VAL CA C N S 405 VAL C C N N 406 VAL O O N N 407 VAL CB C N N 408 VAL CG1 C N N 409 VAL CG2 C N N 410 VAL OXT O N N 411 VAL H H N N 412 VAL H2 H N N 413 VAL HA H N N 414 VAL HB H N N 415 VAL HG11 H N N 416 VAL HG12 H N N 417 VAL HG13 H N N 418 VAL HG21 H N N 419 VAL HG22 H N N 420 VAL HG23 H N N 421 VAL HXT H N N 422 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2GD C13 C04 doub Y N 1 2GD C13 C14 sing Y N 2 2GD N01 C02 sing N N 3 2GD C02 N03 doub Y N 4 2GD C02 N17 sing Y N 5 2GD N03 C04 sing Y N 6 2GD C04 C05 sing N N 7 2GD C05 C06 doub Y N 8 2GD C05 C11 sing Y N 9 2GD C06 C07 sing Y N 10 2GD C07 C08 doub Y N 11 2GD C08 C09 sing Y N 12 2GD C09 C11 doub Y N 13 2GD C11 CL2 sing N N 14 2GD C14 N15 sing N N 15 2GD C14 N17 doub Y N 16 2GD N15 C16 sing N N 17 2GD C09 CL1 sing N N 18 2GD C13 H1 sing N N 19 2GD N01 H2 sing N N 20 2GD N01 H3 sing N N 21 2GD C06 H4 sing N N 22 2GD C07 H5 sing N N 23 2GD C08 H6 sing N N 24 2GD N15 H13 sing N N 25 2GD C16 H14 sing N N 26 2GD C16 H15 sing N N 27 2GD C16 H16 sing N N 28 ALA N CA sing N N 29 ALA N H sing N N 30 ALA N H2 sing N N 31 ALA CA C sing N N 32 ALA CA CB sing N N 33 ALA CA HA sing N N 34 ALA C O doub N N 35 ALA C OXT sing N N 36 ALA CB HB1 sing N N 37 ALA CB HB2 sing N N 38 ALA CB HB3 sing N N 39 ALA OXT HXT sing N N 40 ARG N CA sing N N 41 ARG N H sing N N 42 ARG N H2 sing N N 43 ARG CA C sing N N 44 ARG CA CB sing N N 45 ARG CA HA sing N N 46 ARG C O doub N N 47 ARG C OXT sing N N 48 ARG CB CG sing N N 49 ARG CB HB2 sing N N 50 ARG CB HB3 sing N N 51 ARG CG CD sing N N 52 ARG CG HG2 sing N N 53 ARG CG HG3 sing N N 54 ARG CD NE sing N N 55 ARG CD HD2 sing N N 56 ARG CD HD3 sing N N 57 ARG NE CZ sing N N 58 ARG NE HE sing N N 59 ARG CZ NH1 sing N N 60 ARG CZ NH2 doub N N 61 ARG NH1 HH11 sing N N 62 ARG NH1 HH12 sing N N 63 ARG NH2 HH21 sing N N 64 ARG NH2 HH22 sing N N 65 ARG OXT HXT sing N N 66 ASN N CA sing N N 67 ASN N H sing N N 68 ASN N H2 sing N N 69 ASN CA C sing N N 70 ASN CA CB sing N N 71 ASN CA HA sing N N 72 ASN C O doub N N 73 ASN C OXT sing N N 74 ASN CB CG sing N N 75 ASN CB HB2 sing N N 76 ASN CB HB3 sing N N 77 ASN CG OD1 doub N N 78 ASN CG ND2 sing N N 79 ASN ND2 HD21 sing N N 80 ASN ND2 HD22 sing N N 81 ASN OXT HXT sing N N 82 ASP N CA sing N N 83 ASP N H sing N N 84 ASP N H2 sing N N 85 ASP CA C sing N N 86 ASP CA CB sing N N 87 ASP CA HA sing N N 88 ASP C O doub N N 89 ASP C OXT sing N N 90 ASP CB CG sing N N 91 ASP CB HB2 sing N N 92 ASP CB HB3 sing N N 93 ASP CG OD1 doub N N 94 ASP CG OD2 sing N N 95 ASP OD2 HD2 sing N N 96 ASP OXT HXT sing N N 97 CYS N CA sing N N 98 CYS N H sing N N 99 CYS N H2 sing N N 100 CYS CA C sing N N 101 CYS CA CB sing N N 102 CYS CA HA sing N N 103 CYS C O doub N N 104 CYS C OXT sing N N 105 CYS CB SG sing N N 106 CYS CB HB2 sing N N 107 CYS CB HB3 sing N N 108 CYS SG HG sing N N 109 CYS OXT HXT sing N N 110 GLN N CA sing N N 111 GLN N H sing N N 112 GLN N H2 sing N N 113 GLN CA C sing N N 114 GLN CA CB sing N N 115 GLN CA HA sing N N 116 GLN C O doub N N 117 GLN C OXT sing N N 118 GLN CB CG sing N N 119 GLN CB HB2 sing N N 120 GLN CB HB3 sing N N 121 GLN CG CD sing N N 122 GLN CG HG2 sing N N 123 GLN CG HG3 sing N N 124 GLN CD OE1 doub N N 125 GLN CD NE2 sing N N 126 GLN NE2 HE21 sing N N 127 GLN NE2 HE22 sing N N 128 GLN OXT HXT sing N N 129 GLU N CA sing N N 130 GLU N H sing N N 131 GLU N H2 sing N N 132 GLU CA C sing N N 133 GLU CA CB sing N N 134 GLU CA HA sing N N 135 GLU C O doub N N 136 GLU C OXT sing N N 137 GLU CB CG sing N N 138 GLU CB HB2 sing N N 139 GLU CB HB3 sing N N 140 GLU CG CD sing N N 141 GLU CG HG2 sing N N 142 GLU CG HG3 sing N N 143 GLU CD OE1 doub N N 144 GLU CD OE2 sing N N 145 GLU OE2 HE2 sing N N 146 GLU OXT HXT sing N N 147 GLY N CA sing N N 148 GLY N H sing N N 149 GLY N H2 sing N N 150 GLY CA C sing N N 151 GLY CA HA2 sing N N 152 GLY CA HA3 sing N N 153 GLY C O doub N N 154 GLY C OXT sing N N 155 GLY OXT HXT sing N N 156 HIS N CA sing N N 157 HIS N H sing N N 158 HIS N H2 sing N N 159 HIS CA C sing N N 160 HIS CA CB sing N N 161 HIS CA HA sing N N 162 HIS C O doub N N 163 HIS C OXT sing N N 164 HIS CB CG sing N N 165 HIS CB HB2 sing N N 166 HIS CB HB3 sing N N 167 HIS CG ND1 sing Y N 168 HIS CG CD2 doub Y N 169 HIS ND1 CE1 doub Y N 170 HIS ND1 HD1 sing N N 171 HIS CD2 NE2 sing Y N 172 HIS CD2 HD2 sing N N 173 HIS CE1 NE2 sing Y N 174 HIS CE1 HE1 sing N N 175 HIS NE2 HE2 sing N N 176 HIS OXT HXT sing N N 177 HOH O H1 sing N N 178 HOH O H2 sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 SO4 S O1 doub N N 318 SO4 S O2 doub N N 319 SO4 S O3 sing N N 320 SO4 S O4 sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-(2,3-dichlorophenyl)-N~4~-methylpyrimidine-2,4-diamine' 2GD 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ZR1 _pdbx_initial_refinement_model.details 'PDB ENTRY 3ZR1' #