HEADER CHAPERONE 05-OCT-13 4N2P TITLE STRUCTURE OF ARCHEASE FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARCHEASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 5 GENE: PH1536; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70-LACI KEYWDS METAL COORDINATION, RNA LIGASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.DESAI,C.A.BINGMAN,G.N.PHILLIPS JR.,R.T.RAINES REVDAT 4 23-SEP-20 4N2P 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 30-APR-14 4N2P 1 JRNL REVDAT 2 23-APR-14 4N2P 1 JRNL REVDAT 1 01-JAN-14 4N2P 0 JRNL AUTH K.K.DESAI,C.L.CHENG,C.A.BINGMAN,G.N.PHILLIPS JR.,R.T.RAINES JRNL TITL A TRNA SPLICING OPERON: ARCHEASE ENDOWS RTCB WITH DUAL JRNL TITL 2 GTP/ATP COFACTOR SPECIFICITY AND ACCELERATES RNA LIGATION. JRNL REF NUCLEIC ACIDS RES. V. 42 3931 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24435797 JRNL DOI 10.1093/NAR/GKT1375 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 114876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9668 - 4.2507 0.98 9135 180 0.1699 0.1939 REMARK 3 2 4.2507 - 3.3743 0.99 9231 192 0.1386 0.1801 REMARK 3 3 3.3743 - 2.9478 0.99 9281 83 0.1497 0.2072 REMARK 3 4 2.9478 - 2.6784 0.99 9247 113 0.1540 0.1953 REMARK 3 5 2.6784 - 2.4864 0.98 9134 196 0.1456 0.1742 REMARK 3 6 2.4864 - 2.3398 0.98 9095 190 0.1359 0.1508 REMARK 3 7 2.3398 - 2.2226 0.98 9099 192 0.1268 0.1675 REMARK 3 8 2.2226 - 2.1259 0.98 9162 51 0.1254 0.1493 REMARK 3 9 2.1259 - 2.0441 0.97 9100 151 0.1265 0.1515 REMARK 3 10 2.0441 - 1.9735 0.97 8976 200 0.1270 0.1662 REMARK 3 11 1.9735 - 1.9118 0.97 8977 198 0.1312 0.1774 REMARK 3 12 1.9118 - 1.8572 0.96 9002 118 0.1331 0.1631 REMARK 3 13 1.8572 - 1.8083 0.96 8979 123 0.1294 0.1707 REMARK 3 14 1.8083 - 1.7642 0.95 8902 168 0.1335 0.1685 REMARK 3 15 1.7642 - 1.7240 0.95 8751 192 0.1382 0.1937 REMARK 3 16 1.7240 - 1.6874 0.93 8756 134 0.1420 0.1928 REMARK 3 17 1.6874 - 1.6536 0.91 8472 116 0.1406 0.1950 REMARK 3 18 1.6536 - 1.6224 0.86 8025 140 0.1399 0.1960 REMARK 3 19 1.6224 - 1.5934 0.83 7742 164 0.1401 0.1715 REMARK 3 20 1.5934 - 1.5664 0.79 7351 104 0.1434 0.1925 REMARK 3 21 1.5664 - 1.5411 0.75 6948 120 0.1423 0.1904 REMARK 3 22 1.5411 - 1.5174 0.69 6421 113 0.1438 0.1510 REMARK 3 23 1.5174 - 1.4951 0.65 6030 114 0.1535 0.2214 REMARK 3 24 1.4951 - 1.4740 0.58 5420 82 0.1610 0.2186 REMARK 3 25 1.4740 - 1.4541 0.52 4845 89 0.1751 0.2034 REMARK 3 26 1.4541 - 1.4352 0.38 3523 76 0.1856 0.2303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4928 REMARK 3 ANGLE : 1.250 6643 REMARK 3 CHIRALITY : 0.076 716 REMARK 3 PLANARITY : 0.006 848 REMARK 3 DIHEDRAL : 14.463 1894 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.435 REMARK 200 RESOLUTION RANGE LOW (A) : 43.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE 0.1 M, 40% MPD, CACL2 REMARK 280 10 MM, MGCL2, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.69300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 328 O HOH D 514 1.79 REMARK 500 O HOH A 338 O HOH A 512 1.81 REMARK 500 O HOH D 326 O HOH D 507 1.85 REMARK 500 O HOH D 367 O HOH D 512 1.88 REMARK 500 O HOH D 488 O HOH D 494 1.90 REMARK 500 O HOH B 455 O HOH B 479 1.91 REMARK 500 O HOH B 309 O HOH B 393 1.92 REMARK 500 SE MSE C 136 O HOH C 514 1.93 REMARK 500 O HOH B 456 O HOH B 483 1.95 REMARK 500 O HOH B 423 O HOH B 425 1.96 REMARK 500 O HOH C 367 O HOH D 511 1.98 REMARK 500 O HOH C 420 O HOH C 451 1.98 REMARK 500 O HOH A 370 O HOH A 510 2.00 REMARK 500 CG MSE C 136 O HOH C 514 2.02 REMARK 500 O HOH A 398 O HOH A 520 2.02 REMARK 500 O HOH D 303 O HOH D 515 2.03 REMARK 500 O HOH A 466 O HOH A 521 2.03 REMARK 500 O HOH C 469 O HOH C 501 2.03 REMARK 500 O HOH D 429 O HOH D 485 2.06 REMARK 500 O HOH D 442 O HOH D 489 2.06 REMARK 500 O HOH C 481 O HOH C 491 2.07 REMARK 500 O HOH A 480 O HOH A 527 2.08 REMARK 500 O HOH D 411 O HOH D 481 2.08 REMARK 500 O HOH A 390 O HOH A 411 2.09 REMARK 500 O HOH B 489 O HOH C 388 2.09 REMARK 500 O HOH A 414 O HOH A 515 2.11 REMARK 500 O HOH C 372 O HOH C 484 2.12 REMARK 500 O HOH C 436 O HOH C 449 2.13 REMARK 500 O HOH C 465 O HOH C 485 2.14 REMARK 500 O HOH A 316 O HOH A 342 2.14 REMARK 500 O HOH C 374 O HOH C 508 2.14 REMARK 500 O HOH C 483 O HOH C 504 2.14 REMARK 500 O HOH C 472 O HOH C 484 2.14 REMARK 500 O HOH A 447 O HOH A 475 2.15 REMARK 500 O HOH D 449 O HOH D 489 2.15 REMARK 500 O HOH C 384 O HOH C 426 2.15 REMARK 500 O HOH A 446 O HOH A 471 2.16 REMARK 500 O HOH B 360 O HOH B 506 2.16 REMARK 500 O HOH D 388 O HOH D 513 2.16 REMARK 500 O HOH C 392 O HOH D 414 2.16 REMARK 500 O HOH D 374 O HOH D 394 2.16 REMARK 500 O HOH B 359 O HOH B 459 2.17 REMARK 500 O HOH C 490 O HOH C 505 2.17 REMARK 500 O HOH A 342 O HOH A 377 2.18 REMARK 500 O HOH A 526 O HOH D 399 2.19 REMARK 500 O HOH C 443 O HOH C 486 2.19 REMARK 500 O HOH B 435 O HOH B 482 2.19 REMARK 500 O HOH A 402 O HOH A 466 2.19 REMARK 500 O HOH C 448 O HOH D 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 9 O HOH A 507 2755 1.86 REMARK 500 O HOH B 341 O HOH D 502 1655 1.86 REMARK 500 O HOH C 519 O HOH D 491 2756 2.04 REMARK 500 O HOH A 400 O HOH A 504 2755 2.11 REMARK 500 O HOH A 499 O HOH B 495 2745 2.12 REMARK 500 O HOH C 504 O HOH D 487 2756 2.18 REMARK 500 O HOH B 500 O HOH D 506 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE D 136 CG - SE - CE ANGL. DEV. = -22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -143.87 52.59 REMARK 500 LYS A 114 -92.29 -106.80 REMARK 500 GLU B 112 71.85 64.20 REMARK 500 LYS B 114 -93.40 -117.04 REMARK 500 ASP C 13 -144.06 53.78 REMARK 500 LYS C 114 -91.19 -105.79 REMARK 500 ASN D 92 107.44 61.89 REMARK 500 LYS D 114 -92.05 -115.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 142 OD1 92.9 REMARK 620 3 ILE A 143 O 85.2 89.0 REMARK 620 4 HOH A 374 O 77.8 85.6 161.9 REMARK 620 5 HOH B 308 O 177.2 86.3 92.1 104.7 REMARK 620 6 HOH B 324 O 93.2 173.5 89.4 97.8 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 13 OD1 REMARK 620 2 ASP C 142 OD1 94.1 REMARK 620 3 ILE C 143 O 85.4 86.6 REMARK 620 4 HOH C 368 O 74.9 82.1 156.5 REMARK 620 5 HOH D 318 O 170.2 86.9 85.0 114.8 REMARK 620 6 HOH D 339 O 91.5 165.1 80.0 112.8 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 202 DBREF 4N2P A 3 143 UNP O59205 ARCH_PYRHO 2 142 DBREF 4N2P B 3 143 UNP O59205 ARCH_PYRHO 2 142 DBREF 4N2P C 3 143 UNP O59205 ARCH_PYRHO 2 142 DBREF 4N2P D 3 143 UNP O59205 ARCH_PYRHO 2 142 SEQADV 4N2P MSE A 1 UNP O59205 EXPRESSION TAG SEQADV 4N2P LEU A 2 UNP O59205 EXPRESSION TAG SEQADV 4N2P MSE B 1 UNP O59205 EXPRESSION TAG SEQADV 4N2P LEU B 2 UNP O59205 EXPRESSION TAG SEQADV 4N2P MSE C 1 UNP O59205 EXPRESSION TAG SEQADV 4N2P LEU C 2 UNP O59205 EXPRESSION TAG SEQADV 4N2P MSE D 1 UNP O59205 EXPRESSION TAG SEQADV 4N2P LEU D 2 UNP O59205 EXPRESSION TAG SEQRES 1 A 143 MSE LEU LYS LYS TRP GLU HIS TYR GLU HIS THR ALA ASP SEQRES 2 A 143 ILE GLY ILE ARG GLY TYR GLY ASP SER LEU GLU GLU ALA SEQRES 3 A 143 PHE GLU ALA VAL ALA ILE ALA LEU PHE ASP VAL MSE VAL SEQRES 4 A 143 ASN VAL ASN LYS VAL GLU LYS LYS GLU VAL ARG GLU ILE SEQRES 5 A 143 GLU VAL GLU ALA GLU ASP LEU GLU ALA LEU LEU TYR SER SEQRES 6 A 143 PHE LEU GLU GLU LEU LEU VAL ILE HIS ASP ILE GLU GLY SEQRES 7 A 143 LEU VAL PHE ARG ASP PHE GLU VAL LYS ILE GLU ARG VAL SEQRES 8 A 143 ASN GLY LYS TYR ARG LEU ARG ALA LYS ALA TYR GLY GLU SEQRES 9 A 143 LYS LEU ASP LEU LYS LYS HIS GLU PRO LYS GLU GLU VAL SEQRES 10 A 143 LYS ALA ILE THR TYR HIS ASP MSE LYS ILE GLU ARG LEU SEQRES 11 A 143 PRO ASN GLY LYS TRP MSE ALA GLN LEU VAL PRO ASP ILE SEQRES 1 B 143 MSE LEU LYS LYS TRP GLU HIS TYR GLU HIS THR ALA ASP SEQRES 2 B 143 ILE GLY ILE ARG GLY TYR GLY ASP SER LEU GLU GLU ALA SEQRES 3 B 143 PHE GLU ALA VAL ALA ILE ALA LEU PHE ASP VAL MSE VAL SEQRES 4 B 143 ASN VAL ASN LYS VAL GLU LYS LYS GLU VAL ARG GLU ILE SEQRES 5 B 143 GLU VAL GLU ALA GLU ASP LEU GLU ALA LEU LEU TYR SER SEQRES 6 B 143 PHE LEU GLU GLU LEU LEU VAL ILE HIS ASP ILE GLU GLY SEQRES 7 B 143 LEU VAL PHE ARG ASP PHE GLU VAL LYS ILE GLU ARG VAL SEQRES 8 B 143 ASN GLY LYS TYR ARG LEU ARG ALA LYS ALA TYR GLY GLU SEQRES 9 B 143 LYS LEU ASP LEU LYS LYS HIS GLU PRO LYS GLU GLU VAL SEQRES 10 B 143 LYS ALA ILE THR TYR HIS ASP MSE LYS ILE GLU ARG LEU SEQRES 11 B 143 PRO ASN GLY LYS TRP MSE ALA GLN LEU VAL PRO ASP ILE SEQRES 1 C 143 MSE LEU LYS LYS TRP GLU HIS TYR GLU HIS THR ALA ASP SEQRES 2 C 143 ILE GLY ILE ARG GLY TYR GLY ASP SER LEU GLU GLU ALA SEQRES 3 C 143 PHE GLU ALA VAL ALA ILE ALA LEU PHE ASP VAL MSE VAL SEQRES 4 C 143 ASN VAL ASN LYS VAL GLU LYS LYS GLU VAL ARG GLU ILE SEQRES 5 C 143 GLU VAL GLU ALA GLU ASP LEU GLU ALA LEU LEU TYR SER SEQRES 6 C 143 PHE LEU GLU GLU LEU LEU VAL ILE HIS ASP ILE GLU GLY SEQRES 7 C 143 LEU VAL PHE ARG ASP PHE GLU VAL LYS ILE GLU ARG VAL SEQRES 8 C 143 ASN GLY LYS TYR ARG LEU ARG ALA LYS ALA TYR GLY GLU SEQRES 9 C 143 LYS LEU ASP LEU LYS LYS HIS GLU PRO LYS GLU GLU VAL SEQRES 10 C 143 LYS ALA ILE THR TYR HIS ASP MSE LYS ILE GLU ARG LEU SEQRES 11 C 143 PRO ASN GLY LYS TRP MSE ALA GLN LEU VAL PRO ASP ILE SEQRES 1 D 143 MSE LEU LYS LYS TRP GLU HIS TYR GLU HIS THR ALA ASP SEQRES 2 D 143 ILE GLY ILE ARG GLY TYR GLY ASP SER LEU GLU GLU ALA SEQRES 3 D 143 PHE GLU ALA VAL ALA ILE ALA LEU PHE ASP VAL MSE VAL SEQRES 4 D 143 ASN VAL ASN LYS VAL GLU LYS LYS GLU VAL ARG GLU ILE SEQRES 5 D 143 GLU VAL GLU ALA GLU ASP LEU GLU ALA LEU LEU TYR SER SEQRES 6 D 143 PHE LEU GLU GLU LEU LEU VAL ILE HIS ASP ILE GLU GLY SEQRES 7 D 143 LEU VAL PHE ARG ASP PHE GLU VAL LYS ILE GLU ARG VAL SEQRES 8 D 143 ASN GLY LYS TYR ARG LEU ARG ALA LYS ALA TYR GLY GLU SEQRES 9 D 143 LYS LEU ASP LEU LYS LYS HIS GLU PRO LYS GLU GLU VAL SEQRES 10 D 143 LYS ALA ILE THR TYR HIS ASP MSE LYS ILE GLU ARG LEU SEQRES 11 D 143 PRO ASN GLY LYS TRP MSE ALA GLN LEU VAL PRO ASP ILE MODRES 4N2P MSE A 1 MET SELENOMETHIONINE MODRES 4N2P MSE A 38 MET SELENOMETHIONINE MODRES 4N2P MSE A 125 MET SELENOMETHIONINE MODRES 4N2P MSE A 136 MET SELENOMETHIONINE MODRES 4N2P MSE B 1 MET SELENOMETHIONINE MODRES 4N2P MSE B 38 MET SELENOMETHIONINE MODRES 4N2P MSE B 125 MET SELENOMETHIONINE MODRES 4N2P MSE B 136 MET SELENOMETHIONINE MODRES 4N2P MSE C 1 MET SELENOMETHIONINE MODRES 4N2P MSE C 38 MET SELENOMETHIONINE MODRES 4N2P MSE C 125 MET SELENOMETHIONINE MODRES 4N2P MSE C 136 MET SELENOMETHIONINE MODRES 4N2P MSE D 1 MET SELENOMETHIONINE MODRES 4N2P MSE D 38 MET SELENOMETHIONINE MODRES 4N2P MSE D 125 MET SELENOMETHIONINE MODRES 4N2P MSE D 136 MET SELENOMETHIONINE HET MSE A 1 19 HET MSE A 38 17 HET MSE A 125 17 HET MSE A 136 17 HET MSE B 1 19 HET MSE B 38 17 HET MSE B 125 17 HET MSE B 136 17 HET MSE C 1 19 HET MSE C 38 17 HET MSE C 125 17 HET MSE C 136 17 HET MSE D 1 19 HET MSE D 38 17 HET MSE D 125 17 HET MSE D 136 17 HET CA A 201 1 HET ACT A 202 7 HET ACT A 203 7 HET MPD B 201 22 HET MPD B 202 22 HET CA C 200 1 HET ACT D 201 7 HET MPD D 202 22 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 CA 2(CA 2+) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 8 MPD 3(C6 H14 O2) FORMUL 13 HOH *878(H2 O) HELIX 1 1 SER A 22 VAL A 39 1 18 HELIX 2 2 ASN A 40 VAL A 44 5 5 HELIX 3 3 ASP A 58 GLY A 78 1 21 HELIX 4 4 SER B 22 VAL B 39 1 18 HELIX 5 5 ASN B 40 VAL B 44 5 5 HELIX 6 6 ASP B 58 GLY B 78 1 21 HELIX 7 7 ASP B 107 GLU B 112 1 6 HELIX 8 8 SER C 22 VAL C 39 1 18 HELIX 9 9 ASN C 40 VAL C 44 5 5 HELIX 10 10 ASP C 58 GLY C 78 1 21 HELIX 11 11 SER D 22 VAL D 39 1 18 HELIX 12 12 ASN D 40 VAL D 44 5 5 HELIX 13 13 ASP D 58 GLY D 78 1 21 SHEET 1 A 4 LYS A 4 THR A 11 0 SHEET 2 A 4 THR B 11 GLY B 20 -1 O TYR B 19 N LYS A 4 SHEET 3 A 4 TRP B 135 LEU B 139 -1 O TRP B 135 N GLY B 20 SHEET 4 A 4 LYS B 126 ARG B 129 -1 N GLU B 128 O MSE B 136 SHEET 1 B 4 LYS A 126 ARG A 129 0 SHEET 2 B 4 TRP A 135 LEU A 139 -1 O MSE A 136 N GLU A 128 SHEET 3 B 4 GLY A 15 GLY A 20 -1 N GLY A 20 O TRP A 135 SHEET 4 B 4 LYS B 4 TYR B 8 -1 O LYS B 4 N TYR A 19 SHEET 1 C 3 GLU A 48 ALA A 56 0 SHEET 2 C 3 LYS A 94 LYS A 105 -1 O LEU A 97 N VAL A 54 SHEET 3 C 3 LEU A 79 VAL A 91 -1 N GLU A 89 O ARG A 96 SHEET 1 D 3 GLU B 48 ALA B 56 0 SHEET 2 D 3 LYS B 94 LYS B 105 -1 O LEU B 97 N VAL B 54 SHEET 3 D 3 LEU B 79 VAL B 91 -1 N LYS B 87 O ARG B 98 SHEET 1 E 4 LYS C 4 THR C 11 0 SHEET 2 E 4 THR D 11 GLY D 20 -1 O TYR D 19 N LYS C 4 SHEET 3 E 4 TRP D 135 LEU D 139 -1 O TRP D 135 N GLY D 20 SHEET 4 E 4 LYS D 126 ARG D 129 -1 N GLU D 128 O MSE D 136 SHEET 1 F 4 LYS C 126 ARG C 129 0 SHEET 2 F 4 TRP C 135 LEU C 139 -1 O MSE C 136 N GLU C 128 SHEET 3 F 4 GLY C 15 GLY C 20 -1 N GLY C 18 O ALA C 137 SHEET 4 F 4 LYS D 4 TYR D 8 -1 O LYS D 4 N TYR C 19 SHEET 1 G 3 GLU C 48 ALA C 56 0 SHEET 2 G 3 LYS C 94 LYS C 105 -1 O LEU C 97 N VAL C 54 SHEET 3 G 3 LEU C 79 VAL C 91 -1 N VAL C 91 O LYS C 94 SHEET 1 H 3 GLU D 48 ALA D 56 0 SHEET 2 H 3 TYR D 95 LYS D 105 -1 O LEU D 97 N VAL D 54 SHEET 3 H 3 LEU D 79 ARG D 90 -1 N LYS D 87 O ARG D 98 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C VAL A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N VAL A 39 1555 1555 1.34 LINK C ASP A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LYS A 126 1555 1555 1.33 LINK C TRP A 135 N MSE A 136 1555 1555 1.32 LINK C MSE A 136 N ALA A 137 1555 1555 1.34 LINK C MSE B 1 N LEU B 2 1555 1555 1.32 LINK C VAL B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N VAL B 39 1555 1555 1.32 LINK C ASP B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N LYS B 126 1555 1555 1.33 LINK C TRP B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N ALA B 137 1555 1555 1.33 LINK C MSE C 1 N LEU C 2 1555 1555 1.33 LINK C VAL C 37 N MSE C 38 1555 1555 1.33 LINK C MSE C 38 N VAL C 39 1555 1555 1.32 LINK C ASP C 124 N MSE C 125 1555 1555 1.33 LINK C MSE C 125 N LYS C 126 1555 1555 1.32 LINK C TRP C 135 N MSE C 136 1555 1555 1.33 LINK C MSE C 136 N ALA C 137 1555 1555 1.32 LINK C MSE D 1 N LEU D 2 1555 1555 1.33 LINK C VAL D 37 N MSE D 38 1555 1555 1.33 LINK C MSE D 38 N VAL D 39 1555 1555 1.33 LINK C ASP D 124 N MSE D 125 1555 1555 1.33 LINK C MSE D 125 N LYS D 126 1555 1555 1.32 LINK C TRP D 135 N MSE D 136 1555 1555 1.33 LINK C MSE D 136 N ALA D 137 1555 1555 1.33 LINK OD1 ASP A 13 CA CA A 201 1555 1555 2.38 LINK OD1 ASP A 142 CA CA A 201 1555 1555 2.23 LINK O ILE A 143 CA CA A 201 1555 1555 2.35 LINK CA CA A 201 O HOH A 374 1555 1555 2.34 LINK CA CA A 201 O HOH B 308 1555 1555 2.30 LINK CA CA A 201 O HOH B 324 1555 1555 2.39 LINK OD1 ASP C 13 CA CA C 200 1555 1555 2.45 LINK OD1 ASP C 142 CA CA C 200 1555 1555 2.23 LINK O ILE C 143 CA CA C 200 1555 1555 2.32 LINK CA CA C 200 O HOH C 368 1555 1555 2.38 LINK CA CA C 200 O HOH D 318 1555 1555 2.34 LINK CA CA C 200 O HOH D 339 1555 1555 2.51 CISPEP 1 ASN D 92 GLY D 93 0 -10.11 SITE 1 AC1 6 ASP A 13 ASP A 142 ILE A 143 HOH A 374 SITE 2 AC1 6 HOH B 308 HOH B 324 SITE 1 AC2 1 HOH D 383 SITE 1 AC3 2 HOH A 469 HOH A 470 SITE 1 AC4 7 ILE B 52 GLU B 53 GLU B 69 ILE B 73 SITE 2 AC4 7 GLU C 51 GLU C 69 HOH C 305 SITE 1 AC5 8 LYS B 46 GLU B 85 TYR B 102 HOH B 449 SITE 2 AC5 8 HOH B 451 LYS D 46 GLU D 85 TYR D 102 SITE 1 AC6 6 ASP C 13 ASP C 142 ILE C 143 HOH C 368 SITE 2 AC6 6 HOH D 318 HOH D 339 SITE 1 AC7 1 HOH D 507 SITE 1 AC8 7 GLU A 51 ILE A 73 HOH A 344 GLU D 51 SITE 2 AC8 7 ILE D 52 GLU D 53 GLU D 69 CRYST1 72.219 55.386 87.085 90.00 91.13 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013847 0.000000 0.000273 0.00000 SCALE2 0.000000 0.018055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011485 0.00000 HETATM 1 N MSE A 1 112.765 -1.000 9.030 1.00 23.06 N ANISOU 1 N MSE A 1 1565 5333 1863 -754 168 -864 N HETATM 2 CA MSE A 1 111.688 -0.187 8.440 1.00 22.98 C ANISOU 2 CA MSE A 1 1651 5369 1711 -855 210 -880 C HETATM 3 C MSE A 1 110.923 0.524 9.548 1.00 20.59 C ANISOU 3 C MSE A 1 1552 4761 1512 -815 46 -602 C HETATM 4 O MSE A 1 110.593 -0.074 10.576 1.00 20.21 O ANISOU 4 O MSE A 1 1725 4496 1457 -726 -188 -453 O HETATM 5 CB MSE A 1 110.731 -1.088 7.662 1.00 24.98 C ANISOU 5 CB MSE A 1 1857 5790 1845 -1049 229 -1015 C HETATM 6 CG MSE A 1 109.666 -0.326 6.908 1.00 28.33 C ANISOU 6 CG MSE A 1 2251 6385 2126 -1279 151 -1067 C HETATM 7 SE MSE A 1 108.279 -1.493 6.225 1.00 32.88 SE ANISOU 7 SE MSE A 1 2711 7365 2418 -1428 113 -1215 SE HETATM 8 CE MSE A 1 107.347 -1.793 7.902 1.00 30.79 C ANISOU 8 CE MSE A 1 2329 7147 2225 -1367 254 -1120 C HETATM 9 H1 MSE A 1 113.099 -1.614 8.372 1.00 27.67 H HETATM 10 H2 MSE A 1 113.476 -0.426 9.323 1.00 27.67 H HETATM 11 H3 MSE A 1 112.421 -1.491 9.780 1.00 27.67 H HETATM 12 HA MSE A 1 112.070 0.473 7.825 1.00 27.58 H HETATM 13 HB2 MSE A 1 111.241 -1.604 7.017 1.00 29.98 H HETATM 14 HB3 MSE A 1 110.286 -1.684 8.284 1.00 29.98 H HETATM 15 HG2 MSE A 1 109.253 0.317 7.504 1.00 33.99 H HETATM 16 HG3 MSE A 1 110.075 0.130 6.155 1.00 33.99 H HETATM 17 HE1 MSE A 1 106.599 -2.374 7.744 1.00 36.95 H HETATM 18 HE2 MSE A 1 107.951 -2.200 8.527 1.00 36.95 H HETATM 19 HE3 MSE A 1 107.040 -0.950 8.244 1.00 36.95 H