data_4N4Z
#
_entry.id 4N4Z
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4N4Z pdb_00004n4z 10.2210/pdb4n4z/pdb
RCSB RCSB082758 ? ?
WWPDB D_1000082758 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2014-02-05
2 'Structure model' 1 1 2014-10-08
3 'Structure model' 1 2 2017-11-15
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2024-10-09
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Refinement description'
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Data collection'
9 5 'Structure model' 'Database references'
10 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' diffrn_source
2 3 'Structure model' software
3 4 'Structure model' atom_site
4 4 'Structure model' chem_comp
5 4 'Structure model' entity
6 4 'Structure model' pdbx_branch_scheme
7 4 'Structure model' pdbx_chem_comp_identifier
8 4 'Structure model' pdbx_entity_branch
9 4 'Structure model' pdbx_entity_branch_descriptor
10 4 'Structure model' pdbx_entity_branch_link
11 4 'Structure model' pdbx_entity_branch_list
12 4 'Structure model' pdbx_entity_nonpoly
13 4 'Structure model' pdbx_nonpoly_scheme
14 4 'Structure model' pdbx_struct_assembly_gen
15 4 'Structure model' struct_asym
16 4 'Structure model' struct_conn
17 4 'Structure model' struct_site
18 4 'Structure model' struct_site_gen
19 5 'Structure model' chem_comp
20 5 'Structure model' chem_comp_atom
21 5 'Structure model' chem_comp_bond
22 5 'Structure model' database_2
23 5 'Structure model' pdbx_entry_details
24 5 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
2 3 'Structure model' '_software.name'
3 4 'Structure model' '_atom_site.auth_asym_id'
4 4 'Structure model' '_atom_site.auth_seq_id'
5 4 'Structure model' '_atom_site.label_asym_id'
6 4 'Structure model' '_atom_site.label_entity_id'
7 4 'Structure model' '_chem_comp.name'
8 4 'Structure model' '_chem_comp.type'
9 4 'Structure model' '_entity.formula_weight'
10 4 'Structure model' '_entity.pdbx_description'
11 4 'Structure model' '_entity.pdbx_number_of_molecules'
12 4 'Structure model' '_entity.type'
13 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
14 4 'Structure model' '_struct_conn.pdbx_dist_value'
15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
16 4 'Structure model' '_struct_conn.pdbx_role'
17 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
29 5 'Structure model' '_chem_comp.pdbx_synonyms'
30 5 'Structure model' '_database_2.pdbx_DOI'
31 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4N4Z
_pdbx_database_status.recvd_initial_deposition_date 2013-10-08
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4HWY
_pdbx_database_related.details
;The same protein structure solved from identical in vivo grown crystals by Serial Femtosecond Cystallography at an FEL source (Redecke et al. 2013).
;
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gati, C.' 1
'Bourenkov, G.' 2
'Klinge, M.' 3
'Rehders, D.' 4
'Stellato, F.' 5
'Oberthuer, D.' 6
'White, T.A.' 7
'Yevanov, O.' 8
'Sommer, B.P.' 9
'Mogk, S.' 10
'Duszenko, M.' 11
'Betzel, C.' 12
'Schneider, T.R.' 13
'Chapman, H.N.' 14
'Redecke, L.' 15
#
_citation.id primary
_citation.title 'Serial crystallography on in vivo grown microcrystals using synchrotron radiation.'
_citation.journal_abbrev IUCrJ
_citation.journal_volume 1
_citation.page_first 87
_citation.page_last 94
_citation.year 2014
_citation.journal_id_ASTM ?
_citation.country UK
_citation.journal_id_ISSN 2052-2525
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25075324
_citation.pdbx_database_id_DOI 10.1107/S2052252513033939
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gati, C.' 1 ?
primary 'Bourenkov, G.' 2 ?
primary 'Klinge, M.' 3 ?
primary 'Rehders, D.' 4 ?
primary 'Stellato, F.' 5 ?
primary 'Oberthur, D.' 6 ?
primary 'Yefanov, O.' 7 ?
primary 'Sommer, B.P.' 8 ?
primary 'Mogk, S.' 9 ?
primary 'Duszenko, M.' 10 ?
primary 'Betzel, C.' 11 ?
primary 'Schneider, T.R.' 12 ?
primary 'Chapman, H.N.' 13 ?
primary 'Redecke, L.' 14 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Cysteine peptidase C (CPC)' 37259.688 1 3.4.22.- ? ? ?
2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ?
?
3 branched man
'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ?
? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
;
_entity_poly.pdbx_seq_one_letter_code_can
;MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 HIS n
1 3 LEU n
1 4 MET n
1 5 ARG n
1 6 ALA n
1 7 CYS n
1 8 ILE n
1 9 THR n
1 10 PHE n
1 11 CYS n
1 12 ILE n
1 13 ALA n
1 14 SER n
1 15 THR n
1 16 ALA n
1 17 VAL n
1 18 VAL n
1 19 ALA n
1 20 VAL n
1 21 ASN n
1 22 ALA n
1 23 ALA n
1 24 LEU n
1 25 VAL n
1 26 ALA n
1 27 GLU n
1 28 ASP n
1 29 ALA n
1 30 PRO n
1 31 VAL n
1 32 LEU n
1 33 SER n
1 34 LYS n
1 35 ALA n
1 36 PHE n
1 37 VAL n
1 38 ASP n
1 39 ARG n
1 40 VAL n
1 41 ASN n
1 42 ARG n
1 43 LEU n
1 44 ASN n
1 45 ARG n
1 46 GLY n
1 47 ILE n
1 48 TRP n
1 49 LYS n
1 50 ALA n
1 51 LYS n
1 52 TYR n
1 53 ASP n
1 54 GLY n
1 55 VAL n
1 56 MET n
1 57 GLN n
1 58 ASN n
1 59 ILE n
1 60 THR n
1 61 LEU n
1 62 ARG n
1 63 GLU n
1 64 ALA n
1 65 LYS n
1 66 ARG n
1 67 LEU n
1 68 ASN n
1 69 GLY n
1 70 VAL n
1 71 ILE n
1 72 LYS n
1 73 LYS n
1 74 ASN n
1 75 ASN n
1 76 ASN n
1 77 ALA n
1 78 SER n
1 79 ILE n
1 80 LEU n
1 81 PRO n
1 82 LYS n
1 83 ARG n
1 84 ARG n
1 85 PHE n
1 86 THR n
1 87 GLU n
1 88 GLU n
1 89 GLU n
1 90 ALA n
1 91 ARG n
1 92 ALA n
1 93 PRO n
1 94 LEU n
1 95 PRO n
1 96 SER n
1 97 SER n
1 98 PHE n
1 99 ASP n
1 100 SER n
1 101 ALA n
1 102 GLU n
1 103 ALA n
1 104 TRP n
1 105 PRO n
1 106 ASN n
1 107 CYS n
1 108 PRO n
1 109 THR n
1 110 ILE n
1 111 PRO n
1 112 GLN n
1 113 ILE n
1 114 ALA n
1 115 ASP n
1 116 GLN n
1 117 SER n
1 118 ALA n
1 119 CYS n
1 120 GLY n
1 121 SER n
1 122 CYS n
1 123 TRP n
1 124 ALA n
1 125 VAL n
1 126 ALA n
1 127 ALA n
1 128 ALA n
1 129 SER n
1 130 ALA n
1 131 MET n
1 132 SER n
1 133 ASP n
1 134 ARG n
1 135 PHE n
1 136 CYS n
1 137 THR n
1 138 MET n
1 139 GLY n
1 140 GLY n
1 141 VAL n
1 142 GLN n
1 143 ASP n
1 144 VAL n
1 145 HIS n
1 146 ILE n
1 147 SER n
1 148 ALA n
1 149 GLY n
1 150 ASP n
1 151 LEU n
1 152 LEU n
1 153 ALA n
1 154 CYS n
1 155 CYS n
1 156 SER n
1 157 ASP n
1 158 CYS n
1 159 GLY n
1 160 ASP n
1 161 GLY n
1 162 CYS n
1 163 ASN n
1 164 GLY n
1 165 GLY n
1 166 ASP n
1 167 PRO n
1 168 ASP n
1 169 ARG n
1 170 ALA n
1 171 TRP n
1 172 ALA n
1 173 TYR n
1 174 PHE n
1 175 SER n
1 176 SER n
1 177 THR n
1 178 GLY n
1 179 LEU n
1 180 VAL n
1 181 SER n
1 182 ASP n
1 183 TYR n
1 184 CYS n
1 185 GLN n
1 186 PRO n
1 187 TYR n
1 188 PRO n
1 189 PHE n
1 190 PRO n
1 191 HIS n
1 192 CYS n
1 193 SER n
1 194 HIS n
1 195 HIS n
1 196 SER n
1 197 LYS n
1 198 SER n
1 199 LYS n
1 200 ASN n
1 201 GLY n
1 202 TYR n
1 203 PRO n
1 204 PRO n
1 205 CYS n
1 206 SER n
1 207 GLN n
1 208 PHE n
1 209 ASN n
1 210 PHE n
1 211 ASP n
1 212 THR n
1 213 PRO n
1 214 LYS n
1 215 CYS n
1 216 ASN n
1 217 TYR n
1 218 THR n
1 219 CYS n
1 220 ASP n
1 221 ASP n
1 222 PRO n
1 223 THR n
1 224 ILE n
1 225 PRO n
1 226 VAL n
1 227 VAL n
1 228 ASN n
1 229 TYR n
1 230 ARG n
1 231 SER n
1 232 TRP n
1 233 THR n
1 234 SER n
1 235 TYR n
1 236 ALA n
1 237 LEU n
1 238 GLN n
1 239 GLY n
1 240 GLU n
1 241 ASP n
1 242 ASP n
1 243 TYR n
1 244 MET n
1 245 ARG n
1 246 GLU n
1 247 LEU n
1 248 PHE n
1 249 PHE n
1 250 ARG n
1 251 GLY n
1 252 PRO n
1 253 PHE n
1 254 GLU n
1 255 VAL n
1 256 ALA n
1 257 PHE n
1 258 ASP n
1 259 VAL n
1 260 TYR n
1 261 GLU n
1 262 ASP n
1 263 PHE n
1 264 ILE n
1 265 ALA n
1 266 TYR n
1 267 ASN n
1 268 SER n
1 269 GLY n
1 270 VAL n
1 271 TYR n
1 272 HIS n
1 273 HIS n
1 274 VAL n
1 275 SER n
1 276 GLY n
1 277 GLN n
1 278 TYR n
1 279 LEU n
1 280 GLY n
1 281 GLY n
1 282 HIS n
1 283 ALA n
1 284 VAL n
1 285 ARG n
1 286 LEU n
1 287 VAL n
1 288 GLY n
1 289 TRP n
1 290 GLY n
1 291 THR n
1 292 SER n
1 293 ASN n
1 294 GLY n
1 295 VAL n
1 296 PRO n
1 297 TYR n
1 298 TRP n
1 299 LYS n
1 300 ILE n
1 301 ALA n
1 302 ASN n
1 303 SER n
1 304 TRP n
1 305 ASN n
1 306 THR n
1 307 GLU n
1 308 TRP n
1 309 GLY n
1 310 MET n
1 311 ASP n
1 312 GLY n
1 313 TYR n
1 314 PHE n
1 315 LEU n
1 316 ILE n
1 317 ARG n
1 318 ARG n
1 319 GLY n
1 320 SER n
1 321 SER n
1 322 GLU n
1 323 CYS n
1 324 GLY n
1 325 ILE n
1 326 GLU n
1 327 ASP n
1 328 GLY n
1 329 GLY n
1 330 SER n
1 331 ALA n
1 332 GLY n
1 333 ILE n
1 334 PRO n
1 335 LEU n
1 336 ALA n
1 337 PRO n
1 338 ASN n
1 339 THR n
1 340 ALA n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene Tb927.6.560
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain 907
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma brucei brucei'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5702
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name 'fall armyworm'
_entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain Sf9
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ?
4 3 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
5 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0
6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 3 2 NAG C1 O1 1 NAG O4 HO4 sing ?
3 3 3 BMA C1 O1 2 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 ? ? ? A . n
A 1 2 HIS 2 2 ? ? ? A . n
A 1 3 LEU 3 3 ? ? ? A . n
A 1 4 MET 4 4 ? ? ? A . n
A 1 5 ARG 5 5 ? ? ? A . n
A 1 6 ALA 6 6 ? ? ? A . n
A 1 7 CYS 7 7 ? ? ? A . n
A 1 8 ILE 8 8 ? ? ? A . n
A 1 9 THR 9 9 ? ? ? A . n
A 1 10 PHE 10 10 ? ? ? A . n
A 1 11 CYS 11 11 ? ? ? A . n
A 1 12 ILE 12 12 ? ? ? A . n
A 1 13 ALA 13 13 ? ? ? A . n
A 1 14 SER 14 14 ? ? ? A . n
A 1 15 THR 15 15 ? ? ? A . n
A 1 16 ALA 16 16 ? ? ? A . n
A 1 17 VAL 17 17 ? ? ? A . n
A 1 18 VAL 18 18 ? ? ? A . n
A 1 19 ALA 19 19 ? ? ? A . n
A 1 20 VAL 20 20 ? ? ? A . n
A 1 21 ASN 21 21 ? ? ? A . n
A 1 22 ALA 22 22 ? ? ? A . n
A 1 23 ALA 23 23 ? ? ? A . n
A 1 24 LEU 24 24 ? ? ? A . n
A 1 25 VAL 25 25 ? ? ? A . n
A 1 26 ALA 26 26 26 ALA ALA A . n
A 1 27 GLU 27 27 27 GLU GLU A . n
A 1 28 ASP 28 28 28 ASP ASP A . n
A 1 29 ALA 29 29 29 ALA ALA A . n
A 1 30 PRO 30 30 30 PRO PRO A . n
A 1 31 VAL 31 31 31 VAL VAL A . n
A 1 32 LEU 32 32 32 LEU LEU A . n
A 1 33 SER 33 33 33 SER SER A . n
A 1 34 LYS 34 34 34 LYS LYS A . n
A 1 35 ALA 35 35 35 ALA ALA A . n
A 1 36 PHE 36 36 36 PHE PHE A . n
A 1 37 VAL 37 37 37 VAL VAL A . n
A 1 38 ASP 38 38 38 ASP ASP A . n
A 1 39 ARG 39 39 39 ARG ARG A . n
A 1 40 VAL 40 40 40 VAL VAL A . n
A 1 41 ASN 41 41 41 ASN ASN A . n
A 1 42 ARG 42 42 42 ARG ARG A . n
A 1 43 LEU 43 43 43 LEU LEU A . n
A 1 44 ASN 44 44 44 ASN ASN A . n
A 1 45 ARG 45 45 45 ARG ARG A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 ILE 47 47 47 ILE ILE A . n
A 1 48 TRP 48 48 48 TRP TRP A . n
A 1 49 LYS 49 49 49 LYS LYS A . n
A 1 50 ALA 50 50 50 ALA ALA A . n
A 1 51 LYS 51 51 51 LYS LYS A . n
A 1 52 TYR 52 52 52 TYR TYR A . n
A 1 53 ASP 53 53 53 ASP ASP A . n
A 1 54 GLY 54 54 54 GLY GLY A . n
A 1 55 VAL 55 55 55 VAL VAL A . n
A 1 56 MET 56 56 56 MET MET A . n
A 1 57 GLN 57 57 57 GLN GLN A . n
A 1 58 ASN 58 58 58 ASN ASN A . n
A 1 59 ILE 59 59 59 ILE ILE A . n
A 1 60 THR 60 60 60 THR THR A . n
A 1 61 LEU 61 61 61 LEU LEU A . n
A 1 62 ARG 62 62 62 ARG ARG A . n
A 1 63 GLU 63 63 63 GLU GLU A . n
A 1 64 ALA 64 64 64 ALA ALA A . n
A 1 65 LYS 65 65 65 LYS LYS A . n
A 1 66 ARG 66 66 66 ARG ARG A . n
A 1 67 LEU 67 67 67 LEU LEU A . n
A 1 68 ASN 68 68 68 ASN ASN A . n
A 1 69 GLY 69 69 69 GLY GLY A . n
A 1 70 VAL 70 70 70 VAL VAL A . n
A 1 71 ILE 71 71 71 ILE ILE A . n
A 1 72 LYS 72 72 72 LYS LYS A . n
A 1 73 LYS 73 73 ? ? ? A . n
A 1 74 ASN 74 74 ? ? ? A . n
A 1 75 ASN 75 75 ? ? ? A . n
A 1 76 ASN 76 76 ? ? ? A . n
A 1 77 ALA 77 77 ? ? ? A . n
A 1 78 SER 78 78 78 SER SER A . n
A 1 79 ILE 79 79 79 ILE ILE A . n
A 1 80 LEU 80 80 80 LEU LEU A . n
A 1 81 PRO 81 81 81 PRO PRO A . n
A 1 82 LYS 82 82 82 LYS LYS A . n
A 1 83 ARG 83 83 83 ARG ARG A . n
A 1 84 ARG 84 84 84 ARG ARG A . n
A 1 85 PHE 85 85 85 PHE PHE A . n
A 1 86 THR 86 86 86 THR THR A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 GLU 88 88 88 GLU GLU A . n
A 1 89 GLU 89 89 89 GLU GLU A . n
A 1 90 ALA 90 90 90 ALA ALA A . n
A 1 91 ARG 91 91 91 ARG ARG A . n
A 1 92 ALA 92 92 92 ALA ALA A . n
A 1 93 PRO 93 93 93 PRO PRO A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 PRO 95 95 95 PRO PRO A . n
A 1 96 SER 96 96 96 SER SER A . n
A 1 97 SER 97 97 97 SER SER A . n
A 1 98 PHE 98 98 98 PHE PHE A . n
A 1 99 ASP 99 99 99 ASP ASP A . n
A 1 100 SER 100 100 100 SER SER A . n
A 1 101 ALA 101 101 101 ALA ALA A . n
A 1 102 GLU 102 102 102 GLU GLU A . n
A 1 103 ALA 103 103 103 ALA ALA A . n
A 1 104 TRP 104 104 104 TRP TRP A . n
A 1 105 PRO 105 105 105 PRO PRO A . n
A 1 106 ASN 106 106 106 ASN ASN A . n
A 1 107 CYS 107 107 107 CYS CYS A . n
A 1 108 PRO 108 108 108 PRO PRO A . n
A 1 109 THR 109 109 109 THR THR A . n
A 1 110 ILE 110 110 110 ILE ILE A . n
A 1 111 PRO 111 111 111 PRO PRO A . n
A 1 112 GLN 112 112 112 GLN GLN A . n
A 1 113 ILE 113 113 113 ILE ILE A . n
A 1 114 ALA 114 114 114 ALA ALA A . n
A 1 115 ASP 115 115 115 ASP ASP A . n
A 1 116 GLN 116 116 116 GLN GLN A . n
A 1 117 SER 117 117 117 SER SER A . n
A 1 118 ALA 118 118 118 ALA ALA A . n
A 1 119 CYS 119 119 119 CYS CYS A . n
A 1 120 GLY 120 120 120 GLY GLY A . n
A 1 121 SER 121 121 121 SER SER A . n
A 1 122 CYS 122 122 122 CYS CYS A . n
A 1 123 TRP 123 123 123 TRP TRP A . n
A 1 124 ALA 124 124 124 ALA ALA A . n
A 1 125 VAL 125 125 125 VAL VAL A . n
A 1 126 ALA 126 126 126 ALA ALA A . n
A 1 127 ALA 127 127 127 ALA ALA A . n
A 1 128 ALA 128 128 128 ALA ALA A . n
A 1 129 SER 129 129 129 SER SER A . n
A 1 130 ALA 130 130 130 ALA ALA A . n
A 1 131 MET 131 131 131 MET MET A . n
A 1 132 SER 132 132 132 SER SER A . n
A 1 133 ASP 133 133 133 ASP ASP A . n
A 1 134 ARG 134 134 134 ARG ARG A . n
A 1 135 PHE 135 135 135 PHE PHE A . n
A 1 136 CYS 136 136 136 CYS CYS A . n
A 1 137 THR 137 137 137 THR THR A . n
A 1 138 MET 138 138 138 MET MET A . n
A 1 139 GLY 139 139 139 GLY GLY A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 VAL 141 141 141 VAL VAL A . n
A 1 142 GLN 142 142 142 GLN GLN A . n
A 1 143 ASP 143 143 143 ASP ASP A . n
A 1 144 VAL 144 144 144 VAL VAL A . n
A 1 145 HIS 145 145 145 HIS HIS A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 SER 147 147 147 SER SER A . n
A 1 148 ALA 148 148 148 ALA ALA A . n
A 1 149 GLY 149 149 149 GLY GLY A . n
A 1 150 ASP 150 150 150 ASP ASP A . n
A 1 151 LEU 151 151 151 LEU LEU A . n
A 1 152 LEU 152 152 152 LEU LEU A . n
A 1 153 ALA 153 153 153 ALA ALA A . n
A 1 154 CYS 154 154 154 CYS CYS A . n
A 1 155 CYS 155 155 155 CYS CYS A . n
A 1 156 SER 156 156 156 SER SER A . n
A 1 157 ASP 157 157 157 ASP ASP A . n
A 1 158 CYS 158 158 158 CYS CYS A . n
A 1 159 GLY 159 159 159 GLY GLY A . n
A 1 160 ASP 160 160 160 ASP ASP A . n
A 1 161 GLY 161 161 161 GLY GLY A . n
A 1 162 CYS 162 162 162 CYS CYS A . n
A 1 163 ASN 163 163 163 ASN ASN A . n
A 1 164 GLY 164 164 164 GLY GLY A . n
A 1 165 GLY 165 165 165 GLY GLY A . n
A 1 166 ASP 166 166 166 ASP ASP A . n
A 1 167 PRO 167 167 167 PRO PRO A . n
A 1 168 ASP 168 168 168 ASP ASP A . n
A 1 169 ARG 169 169 169 ARG ARG A . n
A 1 170 ALA 170 170 170 ALA ALA A . n
A 1 171 TRP 171 171 171 TRP TRP A . n
A 1 172 ALA 172 172 172 ALA ALA A . n
A 1 173 TYR 173 173 173 TYR TYR A . n
A 1 174 PHE 174 174 174 PHE PHE A . n
A 1 175 SER 175 175 175 SER SER A . n
A 1 176 SER 176 176 176 SER SER A . n
A 1 177 THR 177 177 177 THR THR A . n
A 1 178 GLY 178 178 178 GLY GLY A . n
A 1 179 LEU 179 179 179 LEU LEU A . n
A 1 180 VAL 180 180 180 VAL VAL A . n
A 1 181 SER 181 181 181 SER SER A . n
A 1 182 ASP 182 182 182 ASP ASP A . n
A 1 183 TYR 183 183 183 TYR TYR A . n
A 1 184 CYS 184 184 184 CYS CYS A . n
A 1 185 GLN 185 185 185 GLN GLN A . n
A 1 186 PRO 186 186 186 PRO PRO A . n
A 1 187 TYR 187 187 187 TYR TYR A . n
A 1 188 PRO 188 188 188 PRO PRO A . n
A 1 189 PHE 189 189 189 PHE PHE A . n
A 1 190 PRO 190 190 190 PRO PRO A . n
A 1 191 HIS 191 191 191 HIS HIS A . n
A 1 192 CYS 192 192 192 CYS CYS A . n
A 1 193 SER 193 193 193 SER SER A . n
A 1 194 HIS 194 194 194 HIS HIS A . n
A 1 195 HIS 195 195 195 HIS HIS A . n
A 1 196 SER 196 196 196 SER SER A . n
A 1 197 LYS 197 197 197 LYS LYS A . n
A 1 198 SER 198 198 198 SER SER A . n
A 1 199 LYS 199 199 199 LYS LYS A . n
A 1 200 ASN 200 200 200 ASN ASN A . n
A 1 201 GLY 201 201 201 GLY GLY A . n
A 1 202 TYR 202 202 202 TYR TYR A . n
A 1 203 PRO 203 203 203 PRO PRO A . n
A 1 204 PRO 204 204 204 PRO PRO A . n
A 1 205 CYS 205 205 205 CYS CYS A . n
A 1 206 SER 206 206 206 SER SER A . n
A 1 207 GLN 207 207 207 GLN GLN A . n
A 1 208 PHE 208 208 208 PHE PHE A . n
A 1 209 ASN 209 209 209 ASN ASN A . n
A 1 210 PHE 210 210 210 PHE PHE A . n
A 1 211 ASP 211 211 211 ASP ASP A . n
A 1 212 THR 212 212 212 THR THR A . n
A 1 213 PRO 213 213 213 PRO PRO A . n
A 1 214 LYS 214 214 214 LYS LYS A . n
A 1 215 CYS 215 215 215 CYS CYS A . n
A 1 216 ASN 216 216 216 ASN ASN A . n
A 1 217 TYR 217 217 217 TYR TYR A . n
A 1 218 THR 218 218 218 THR THR A . n
A 1 219 CYS 219 219 219 CYS CYS A . n
A 1 220 ASP 220 220 220 ASP ASP A . n
A 1 221 ASP 221 221 221 ASP ASP A . n
A 1 222 PRO 222 222 222 PRO PRO A . n
A 1 223 THR 223 223 223 THR THR A . n
A 1 224 ILE 224 224 224 ILE ILE A . n
A 1 225 PRO 225 225 225 PRO PRO A . n
A 1 226 VAL 226 226 226 VAL VAL A . n
A 1 227 VAL 227 227 227 VAL VAL A . n
A 1 228 ASN 228 228 228 ASN ASN A . n
A 1 229 TYR 229 229 229 TYR TYR A . n
A 1 230 ARG 230 230 230 ARG ARG A . n
A 1 231 SER 231 231 231 SER SER A . n
A 1 232 TRP 232 232 232 TRP TRP A . n
A 1 233 THR 233 233 233 THR THR A . n
A 1 234 SER 234 234 234 SER SER A . n
A 1 235 TYR 235 235 235 TYR TYR A . n
A 1 236 ALA 236 236 236 ALA ALA A . n
A 1 237 LEU 237 237 237 LEU LEU A . n
A 1 238 GLN 238 238 238 GLN GLN A . n
A 1 239 GLY 239 239 239 GLY GLY A . n
A 1 240 GLU 240 240 240 GLU GLU A . n
A 1 241 ASP 241 241 241 ASP ASP A . n
A 1 242 ASP 242 242 242 ASP ASP A . n
A 1 243 TYR 243 243 243 TYR TYR A . n
A 1 244 MET 244 244 244 MET MET A . n
A 1 245 ARG 245 245 245 ARG ARG A . n
A 1 246 GLU 246 246 246 GLU GLU A . n
A 1 247 LEU 247 247 247 LEU LEU A . n
A 1 248 PHE 248 248 248 PHE PHE A . n
A 1 249 PHE 249 249 249 PHE PHE A . n
A 1 250 ARG 250 250 250 ARG ARG A . n
A 1 251 GLY 251 251 251 GLY GLY A . n
A 1 252 PRO 252 252 252 PRO PRO A . n
A 1 253 PHE 253 253 253 PHE PHE A . n
A 1 254 GLU 254 254 254 GLU GLU A . n
A 1 255 VAL 255 255 255 VAL VAL A . n
A 1 256 ALA 256 256 256 ALA ALA A . n
A 1 257 PHE 257 257 257 PHE PHE A . n
A 1 258 ASP 258 258 258 ASP ASP A . n
A 1 259 VAL 259 259 259 VAL VAL A . n
A 1 260 TYR 260 260 260 TYR TYR A . n
A 1 261 GLU 261 261 261 GLU GLU A . n
A 1 262 ASP 262 262 262 ASP ASP A . n
A 1 263 PHE 263 263 263 PHE PHE A . n
A 1 264 ILE 264 264 264 ILE ILE A . n
A 1 265 ALA 265 265 265 ALA ALA A . n
A 1 266 TYR 266 266 266 TYR TYR A . n
A 1 267 ASN 267 267 267 ASN ASN A . n
A 1 268 SER 268 268 268 SER SER A . n
A 1 269 GLY 269 269 269 GLY GLY A . n
A 1 270 VAL 270 270 270 VAL VAL A . n
A 1 271 TYR 271 271 271 TYR TYR A . n
A 1 272 HIS 272 272 272 HIS HIS A . n
A 1 273 HIS 273 273 273 HIS HIS A . n
A 1 274 VAL 274 274 274 VAL VAL A . n
A 1 275 SER 275 275 275 SER SER A . n
A 1 276 GLY 276 276 276 GLY GLY A . n
A 1 277 GLN 277 277 277 GLN GLN A . n
A 1 278 TYR 278 278 278 TYR TYR A . n
A 1 279 LEU 279 279 279 LEU LEU A . n
A 1 280 GLY 280 280 280 GLY GLY A . n
A 1 281 GLY 281 281 281 GLY GLY A . n
A 1 282 HIS 282 282 282 HIS HIS A . n
A 1 283 ALA 283 283 283 ALA ALA A . n
A 1 284 VAL 284 284 284 VAL VAL A . n
A 1 285 ARG 285 285 285 ARG ARG A . n
A 1 286 LEU 286 286 286 LEU LEU A . n
A 1 287 VAL 287 287 287 VAL VAL A . n
A 1 288 GLY 288 288 288 GLY GLY A . n
A 1 289 TRP 289 289 289 TRP TRP A . n
A 1 290 GLY 290 290 290 GLY GLY A . n
A 1 291 THR 291 291 291 THR THR A . n
A 1 292 SER 292 292 292 SER SER A . n
A 1 293 ASN 293 293 293 ASN ASN A . n
A 1 294 GLY 294 294 294 GLY GLY A . n
A 1 295 VAL 295 295 295 VAL VAL A . n
A 1 296 PRO 296 296 296 PRO PRO A . n
A 1 297 TYR 297 297 297 TYR TYR A . n
A 1 298 TRP 298 298 298 TRP TRP A . n
A 1 299 LYS 299 299 299 LYS LYS A . n
A 1 300 ILE 300 300 300 ILE ILE A . n
A 1 301 ALA 301 301 301 ALA ALA A . n
A 1 302 ASN 302 302 302 ASN ASN A . n
A 1 303 SER 303 303 303 SER SER A . n
A 1 304 TRP 304 304 304 TRP TRP A . n
A 1 305 ASN 305 305 305 ASN ASN A . n
A 1 306 THR 306 306 306 THR THR A . n
A 1 307 GLU 307 307 307 GLU GLU A . n
A 1 308 TRP 308 308 308 TRP TRP A . n
A 1 309 GLY 309 309 309 GLY GLY A . n
A 1 310 MET 310 310 310 MET MET A . n
A 1 311 ASP 311 311 311 ASP ASP A . n
A 1 312 GLY 312 312 312 GLY GLY A . n
A 1 313 TYR 313 313 313 TYR TYR A . n
A 1 314 PHE 314 314 314 PHE PHE A . n
A 1 315 LEU 315 315 315 LEU LEU A . n
A 1 316 ILE 316 316 316 ILE ILE A . n
A 1 317 ARG 317 317 317 ARG ARG A . n
A 1 318 ARG 318 318 318 ARG ARG A . n
A 1 319 GLY 319 319 319 GLY GLY A . n
A 1 320 SER 320 320 320 SER SER A . n
A 1 321 SER 321 321 321 SER SER A . n
A 1 322 GLU 322 322 322 GLU GLU A . n
A 1 323 CYS 323 323 323 CYS CYS A . n
A 1 324 GLY 324 324 324 GLY GLY A . n
A 1 325 ILE 325 325 325 ILE ILE A . n
A 1 326 GLU 326 326 326 GLU GLU A . n
A 1 327 ASP 327 327 327 ASP ASP A . n
A 1 328 GLY 328 328 328 GLY GLY A . n
A 1 329 GLY 329 329 329 GLY GLY A . n
A 1 330 SER 330 330 330 SER SER A . n
A 1 331 ALA 331 331 331 ALA ALA A . n
A 1 332 GLY 332 332 332 GLY GLY A . n
A 1 333 ILE 333 333 333 ILE ILE A . n
A 1 334 PRO 334 334 334 PRO PRO A . n
A 1 335 LEU 335 335 335 LEU LEU A . n
A 1 336 ALA 336 336 336 ALA ALA A . n
A 1 337 PRO 337 337 337 PRO PRO A . n
A 1 338 ASN 338 338 338 ASN ASN A . n
A 1 339 THR 339 339 339 THR THR A . n
A 1 340 ALA 340 340 ? ? ? A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 A NAG 401 n
B 2 NAG 2 B NAG 2 A NAG 402 n
C 3 NAG 1 C NAG 1 A NAG 403 n
C 3 NAG 2 C NAG 2 A NAG 404 n
C 3 BMA 3 C BMA 3 A BMA 405 n
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MxCuBE 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.7.0029 ? 3
XDS 'data reduction' . ? 4
XSCALE 'data scaling' . ? 5
#
_cell.entry_id 4N4Z
_cell.length_a 124.420
_cell.length_b 124.420
_cell.length_c 53.770
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4N4Z
_symmetry.space_group_name_H-M 'P 42 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 94
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4N4Z
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 80
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.79
_exptl_crystal.density_percent_sol 55.95
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp 310.15
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.4
_exptl_crystal_grow.pdbx_details
;Spontaneous formation of needle-shaped microcrystals in Sf9 cells infected with recombinant baculovirus containing the gene encoding the pre-pro form of Trypanosoma brucei cathepsin B, pH 7.4, Crystallization in vivo within living Sf9 insect cells, temperature 310.15 K as described in Koopmann et al. 2012 Nature Methods
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 105
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector PIXEL
_diffrn_detector.type 'DECTRIS PILATUS 6M'
_diffrn_detector.pdbx_collection_date 2013-05-16
_diffrn_detector.details 'KB mirrors, Si 111 monochromator'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Si 111'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.2398
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)'
_diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY'
_diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)'
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.2398
#
_reflns.entry_id 4N4Z
_reflns.observed_criterion_sigma_I 1
_reflns.observed_criterion_sigma_F 1
_reflns.d_resolution_low 88.1
_reflns.d_resolution_high 3.3
_reflns.number_obs 6448
_reflns.number_all 8881
_reflns.percent_possible_obs 99.8
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate 31.9
_reflns.pdbx_redundancy 12.3
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 3.00
_reflns_shell.d_res_low 3.16
_reflns_shell.percent_possible_all 99.8
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 1
_reflns_shell.pdbx_redundancy 12.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4N4Z
_refine.ls_number_reflns_obs 6448
_refine.ls_number_reflns_all 8881
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 88.1
_refine.ls_d_res_high 3.30
_refine.ls_percent_reflns_obs 99.81
_refine.ls_R_factor_obs 0.20162
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.19939
_refine.ls_R_factor_R_free 0.25069
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.5
_refine.ls_number_reflns_R_free 305
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.900
_refine.correlation_coeff_Fo_to_Fc_free 0.833
_refine.B_iso_mean 37.730
_refine.aniso_B[1][1] 0.92
_refine.aniso_B[2][2] 0.92
_refine.aniso_B[3][3] -1.83
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] -0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free 0.519
_refine.overall_SU_ML 0.349
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 21.484
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2392
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 67
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 2459
_refine_hist.d_res_high 3.30
_refine_hist.d_res_low 88.1
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.010 0.019 ? 2542 ? 'X-RAY DIFFRACTION'
r_bond_other_d 0.003 0.020 ? 2226 ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 1.321 1.960 ? 3469 ? 'X-RAY DIFFRACTION'
r_angle_other_deg 0.850 3.005 ? 5106 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg 5.342 5.000 ? 307 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg 27.614 23.529 ? 119 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg 16.491 15.000 ? 354 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg 13.717 15.000 ? 16 ? 'X-RAY DIFFRACTION'
r_chiral_restr 0.068 0.200 ? 361 ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.004 0.021 ? 2903 ? 'X-RAY DIFFRACTION'
r_gen_planes_other 0.001 0.020 ? 611 ? 'X-RAY DIFFRACTION'
r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 3.300
_refine_ls_shell.d_res_low 3.386
_refine_ls_shell.number_reflns_R_work 471
_refine_ls_shell.R_factor_R_work 0.275
_refine_ls_shell.percent_reflns_obs 99.80
_refine_ls_shell.R_factor_R_free 0.356
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 23
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 4N4Z
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4N4Z
_struct.title
'Trypanosoma brucei procathepsin B structure solved by Serial Microcrystallography using synchrotron radiation'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4N4Z
_struct_keywords.pdbx_keywords HYDROLASE
_struct_keywords.text 'PAPAIN FOLD, HYDROLASE, PROPEPTIDE, GLYCOSYLATION'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code D6XHE1_TRYB2
_struct_ref.pdbx_db_accession D6XHE1
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
;
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4N4Z
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 340
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession D6XHE1
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 340
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 340
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 SER A 33 ? ASN A 44 ? SER A 33 ASN A 44 1 ? 12
HELX_P HELX_P2 2 THR A 60 ? LEU A 67 ? THR A 60 LEU A 67 1 ? 8
HELX_P HELX_P3 3 THR A 86 ? ARG A 91 ? THR A 86 ARG A 91 1 ? 6
HELX_P HELX_P4 4 SER A 100 ? TRP A 104 ? SER A 100 TRP A 104 1 ? 5
HELX_P HELX_P5 5 SER A 121 ? MET A 138 ? SER A 121 MET A 138 1 ? 18
HELX_P HELX_P6 6 SER A 147 ? CYS A 155 ? SER A 147 CYS A 155 1 ? 9
HELX_P HELX_P7 7 ASP A 166 ? THR A 177 ? ASP A 166 THR A 177 1 ? 12
HELX_P HELX_P8 8 GLN A 238 ? GLY A 251 ? GLN A 238 GLY A 251 1 ? 14
HELX_P HELX_P9 9 GLU A 261 ? ALA A 265 ? GLU A 261 ALA A 265 1 ? 5
HELX_P HELX_P10 10 SER A 321 ? ILE A 325 ? SER A 321 ILE A 325 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 136 SG ? ? A CYS 107 A CYS 136 1_555 ? ? ? ? ? ? ? 1.966 ? ?
disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 A CYS 162 SG ? ? A CYS 119 A CYS 162 1_555 ? ? ? ? ? ? ? 2.050 ? ?
disulf3 disulf ? ? A CYS 154 SG ? ? ? 1_555 A CYS 215 SG ? ? A CYS 154 A CYS 215 1_555 ? ? ? ? ? ? ? 2.057 ? ?
disulf4 disulf ? ? A CYS 155 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 155 A CYS 158 1_555 ? ? ? ? ? ? ? 2.057 ? ?
disulf5 disulf ? ? A CYS 184 SG ? ? ? 1_555 A CYS 219 SG ? ? A CYS 184 A CYS 219 1_555 ? ? ? ? ? ? ? 2.039 ? ?
disulf6 disulf ? ? A CYS 192 SG ? ? ? 1_555 A CYS 205 SG ? ? A CYS 192 A CYS 205 1_555 ? ? ? ? ? ? ? 2.054 ? ?
covale1 covale one ? A ASN 58 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 58 B NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation
covale2 covale one ? A ASN 216 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 216 C NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation
covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ?
covale4 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ?
covale5 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.431 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 58 ? NAG B 1 ? 1_555 ASN A 58 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 216 ? NAG C 1 ? 1_555 ASN A 216 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 107 ? CYS A 136 ? CYS A 107 ? 1_555 CYS A 136 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 119 ? CYS A 162 ? CYS A 119 ? 1_555 CYS A 162 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 154 ? CYS A 215 ? CYS A 154 ? 1_555 CYS A 215 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 155 ? CYS A 158 ? CYS A 155 ? 1_555 CYS A 158 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS A 184 ? CYS A 219 ? CYS A 184 ? 1_555 CYS A 219 ? 1_555 SG SG . . . None 'Disulfide bridge'
8 CYS A 192 ? CYS A 205 ? CYS A 192 ? 1_555 CYS A 205 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 2 ?
B ? 5 ?
C ? 4 ?
D ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
C 3 4 ? anti-parallel
D 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 TRP A 48 ? ALA A 50 ? TRP A 48 ALA A 50
A 2 TYR A 266 ? GLY A 269 ? TYR A 266 GLY A 269
B 1 PHE A 98 ? ASP A 99 ? PHE A 98 ASP A 99
B 2 TYR A 278 ? THR A 291 ? TYR A 278 THR A 291
B 3 PHE A 253 ? TYR A 260 ? PHE A 253 TYR A 260
B 4 GLY A 329 ? PRO A 334 ? GLY A 329 PRO A 334
B 5 SER A 231 ? LEU A 237 ? SER A 231 LEU A 237
C 1 PHE A 98 ? ASP A 99 ? PHE A 98 ASP A 99
C 2 TYR A 278 ? THR A 291 ? TYR A 278 THR A 291
C 3 PRO A 296 ? ALA A 301 ? PRO A 296 ALA A 301
C 4 TYR A 313 ? ARG A 317 ? TYR A 313 ARG A 317
D 1 GLY A 159 ? GLY A 161 ? GLY A 159 GLY A 161
D 2 GLY A 164 ? GLY A 165 ? GLY A 164 GLY A 165
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LYS A 49 ? N LYS A 49 O ASN A 267 ? O ASN A 267
B 1 2 N PHE A 98 ? N PHE A 98 O TRP A 289 ? O TRP A 289
B 2 3 O GLY A 280 ? O GLY A 280 N VAL A 259 ? N VAL A 259
B 3 4 N GLU A 254 ? N GLU A 254 O SER A 330 ? O SER A 330
B 4 5 O ALA A 331 ? O ALA A 331 N TYR A 235 ? N TYR A 235
C 1 2 N PHE A 98 ? N PHE A 98 O TRP A 289 ? O TRP A 289
C 2 3 N GLY A 290 ? N GLY A 290 O TYR A 297 ? O TYR A 297
C 3 4 N ILE A 300 ? N ILE A 300 O PHE A 314 ? O PHE A 314
D 1 2 N ASP A 160 ? N ASP A 160 O GLY A 164 ? O GLY A 164
#
_pdbx_entry_details.entry_id 4N4Z
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 ASP
_pdbx_validate_symm_contact.auth_seq_id_1 28
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 NZ
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 LYS
_pdbx_validate_symm_contact.auth_seq_id_2 82
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 4_545
_pdbx_validate_symm_contact.dist 1.77
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 N
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 TRP
_pdbx_validate_rmsd_angle.auth_seq_id_1 304
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 CA
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 TRP
_pdbx_validate_rmsd_angle.auth_seq_id_2 304
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 C
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 TRP
_pdbx_validate_rmsd_angle.auth_seq_id_3 304
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 127.42
_pdbx_validate_rmsd_angle.angle_target_value 111.00
_pdbx_validate_rmsd_angle.angle_deviation 16.42
_pdbx_validate_rmsd_angle.angle_standard_deviation 2.70
_pdbx_validate_rmsd_angle.linker_flag N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 SER A 117 ? ? 51.27 -132.26
2 1 ALA A 118 ? ? -106.49 68.80
3 1 ALA A 127 ? ? -71.40 -71.84
4 1 CYS A 136 ? ? -90.58 -71.79
5 1 MET A 138 ? ? -136.06 -30.62
6 1 HIS A 194 ? ? -88.55 41.23
7 1 THR A 233 ? ? -172.21 149.35
8 1 VAL A 287 ? ? -141.26 -3.94
9 1 TRP A 304 ? ? -116.80 67.93
10 1 ASN A 305 ? ? 83.30 175.34
11 1 SER A 321 ? ? 71.99 45.14
12 1 CYS A 323 ? ? 40.73 29.76
13 1 ASN A 338 ? ? 66.96 -160.57
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 216 A ASN 216 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 58 A ASN 58 ? ASN 'GLYCOSYLATION SITE'
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A MET 1 ? A MET 1
2 1 Y 1 A HIS 2 ? A HIS 2
3 1 Y 1 A LEU 3 ? A LEU 3
4 1 Y 1 A MET 4 ? A MET 4
5 1 Y 1 A ARG 5 ? A ARG 5
6 1 Y 1 A ALA 6 ? A ALA 6
7 1 Y 1 A CYS 7 ? A CYS 7
8 1 Y 1 A ILE 8 ? A ILE 8
9 1 Y 1 A THR 9 ? A THR 9
10 1 Y 1 A PHE 10 ? A PHE 10
11 1 Y 1 A CYS 11 ? A CYS 11
12 1 Y 1 A ILE 12 ? A ILE 12
13 1 Y 1 A ALA 13 ? A ALA 13
14 1 Y 1 A SER 14 ? A SER 14
15 1 Y 1 A THR 15 ? A THR 15
16 1 Y 1 A ALA 16 ? A ALA 16
17 1 Y 1 A VAL 17 ? A VAL 17
18 1 Y 1 A VAL 18 ? A VAL 18
19 1 Y 1 A ALA 19 ? A ALA 19
20 1 Y 1 A VAL 20 ? A VAL 20
21 1 Y 1 A ASN 21 ? A ASN 21
22 1 Y 1 A ALA 22 ? A ALA 22
23 1 Y 1 A ALA 23 ? A ALA 23
24 1 Y 1 A LEU 24 ? A LEU 24
25 1 Y 1 A VAL 25 ? A VAL 25
26 1 Y 1 A LYS 73 ? A LYS 73
27 1 Y 1 A ASN 74 ? A ASN 74
28 1 Y 1 A ASN 75 ? A ASN 75
29 1 Y 1 A ASN 76 ? A ASN 76
30 1 Y 1 A ALA 77 ? A ALA 77
31 1 Y 1 A ALA 340 ? A ALA 340
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BMA C1 C N R 74
BMA C2 C N S 75
BMA C3 C N S 76
BMA C4 C N S 77
BMA C5 C N R 78
BMA C6 C N N 79
BMA O1 O N N 80
BMA O2 O N N 81
BMA O3 O N N 82
BMA O4 O N N 83
BMA O5 O N N 84
BMA O6 O N N 85
BMA H1 H N N 86
BMA H2 H N N 87
BMA H3 H N N 88
BMA H4 H N N 89
BMA H5 H N N 90
BMA H61 H N N 91
BMA H62 H N N 92
BMA HO1 H N N 93
BMA HO2 H N N 94
BMA HO3 H N N 95
BMA HO4 H N N 96
BMA HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GLN N N N N 112
GLN CA C N S 113
GLN C C N N 114
GLN O O N N 115
GLN CB C N N 116
GLN CG C N N 117
GLN CD C N N 118
GLN OE1 O N N 119
GLN NE2 N N N 120
GLN OXT O N N 121
GLN H H N N 122
GLN H2 H N N 123
GLN HA H N N 124
GLN HB2 H N N 125
GLN HB3 H N N 126
GLN HG2 H N N 127
GLN HG3 H N N 128
GLN HE21 H N N 129
GLN HE22 H N N 130
GLN HXT H N N 131
GLU N N N N 132
GLU CA C N S 133
GLU C C N N 134
GLU O O N N 135
GLU CB C N N 136
GLU CG C N N 137
GLU CD C N N 138
GLU OE1 O N N 139
GLU OE2 O N N 140
GLU OXT O N N 141
GLU H H N N 142
GLU H2 H N N 143
GLU HA H N N 144
GLU HB2 H N N 145
GLU HB3 H N N 146
GLU HG2 H N N 147
GLU HG3 H N N 148
GLU HE2 H N N 149
GLU HXT H N N 150
GLY N N N N 151
GLY CA C N N 152
GLY C C N N 153
GLY O O N N 154
GLY OXT O N N 155
GLY H H N N 156
GLY H2 H N N 157
GLY HA2 H N N 158
GLY HA3 H N N 159
GLY HXT H N N 160
HIS N N N N 161
HIS CA C N S 162
HIS C C N N 163
HIS O O N N 164
HIS CB C N N 165
HIS CG C Y N 166
HIS ND1 N Y N 167
HIS CD2 C Y N 168
HIS CE1 C Y N 169
HIS NE2 N Y N 170
HIS OXT O N N 171
HIS H H N N 172
HIS H2 H N N 173
HIS HA H N N 174
HIS HB2 H N N 175
HIS HB3 H N N 176
HIS HD1 H N N 177
HIS HD2 H N N 178
HIS HE1 H N N 179
HIS HE2 H N N 180
HIS HXT H N N 181
ILE N N N N 182
ILE CA C N S 183
ILE C C N N 184
ILE O O N N 185
ILE CB C N S 186
ILE CG1 C N N 187
ILE CG2 C N N 188
ILE CD1 C N N 189
ILE OXT O N N 190
ILE H H N N 191
ILE H2 H N N 192
ILE HA H N N 193
ILE HB H N N 194
ILE HG12 H N N 195
ILE HG13 H N N 196
ILE HG21 H N N 197
ILE HG22 H N N 198
ILE HG23 H N N 199
ILE HD11 H N N 200
ILE HD12 H N N 201
ILE HD13 H N N 202
ILE HXT H N N 203
LEU N N N N 204
LEU CA C N S 205
LEU C C N N 206
LEU O O N N 207
LEU CB C N N 208
LEU CG C N N 209
LEU CD1 C N N 210
LEU CD2 C N N 211
LEU OXT O N N 212
LEU H H N N 213
LEU H2 H N N 214
LEU HA H N N 215
LEU HB2 H N N 216
LEU HB3 H N N 217
LEU HG H N N 218
LEU HD11 H N N 219
LEU HD12 H N N 220
LEU HD13 H N N 221
LEU HD21 H N N 222
LEU HD22 H N N 223
LEU HD23 H N N 224
LEU HXT H N N 225
LYS N N N N 226
LYS CA C N S 227
LYS C C N N 228
LYS O O N N 229
LYS CB C N N 230
LYS CG C N N 231
LYS CD C N N 232
LYS CE C N N 233
LYS NZ N N N 234
LYS OXT O N N 235
LYS H H N N 236
LYS H2 H N N 237
LYS HA H N N 238
LYS HB2 H N N 239
LYS HB3 H N N 240
LYS HG2 H N N 241
LYS HG3 H N N 242
LYS HD2 H N N 243
LYS HD3 H N N 244
LYS HE2 H N N 245
LYS HE3 H N N 246
LYS HZ1 H N N 247
LYS HZ2 H N N 248
LYS HZ3 H N N 249
LYS HXT H N N 250
MET N N N N 251
MET CA C N S 252
MET C C N N 253
MET O O N N 254
MET CB C N N 255
MET CG C N N 256
MET SD S N N 257
MET CE C N N 258
MET OXT O N N 259
MET H H N N 260
MET H2 H N N 261
MET HA H N N 262
MET HB2 H N N 263
MET HB3 H N N 264
MET HG2 H N N 265
MET HG3 H N N 266
MET HE1 H N N 267
MET HE2 H N N 268
MET HE3 H N N 269
MET HXT H N N 270
NAG C1 C N R 271
NAG C2 C N R 272
NAG C3 C N R 273
NAG C4 C N S 274
NAG C5 C N R 275
NAG C6 C N N 276
NAG C7 C N N 277
NAG C8 C N N 278
NAG N2 N N N 279
NAG O1 O N N 280
NAG O3 O N N 281
NAG O4 O N N 282
NAG O5 O N N 283
NAG O6 O N N 284
NAG O7 O N N 285
NAG H1 H N N 286
NAG H2 H N N 287
NAG H3 H N N 288
NAG H4 H N N 289
NAG H5 H N N 290
NAG H61 H N N 291
NAG H62 H N N 292
NAG H81 H N N 293
NAG H82 H N N 294
NAG H83 H N N 295
NAG HN2 H N N 296
NAG HO1 H N N 297
NAG HO3 H N N 298
NAG HO4 H N N 299
NAG HO6 H N N 300
PHE N N N N 301
PHE CA C N S 302
PHE C C N N 303
PHE O O N N 304
PHE CB C N N 305
PHE CG C Y N 306
PHE CD1 C Y N 307
PHE CD2 C Y N 308
PHE CE1 C Y N 309
PHE CE2 C Y N 310
PHE CZ C Y N 311
PHE OXT O N N 312
PHE H H N N 313
PHE H2 H N N 314
PHE HA H N N 315
PHE HB2 H N N 316
PHE HB3 H N N 317
PHE HD1 H N N 318
PHE HD2 H N N 319
PHE HE1 H N N 320
PHE HE2 H N N 321
PHE HZ H N N 322
PHE HXT H N N 323
PRO N N N N 324
PRO CA C N S 325
PRO C C N N 326
PRO O O N N 327
PRO CB C N N 328
PRO CG C N N 329
PRO CD C N N 330
PRO OXT O N N 331
PRO H H N N 332
PRO HA H N N 333
PRO HB2 H N N 334
PRO HB3 H N N 335
PRO HG2 H N N 336
PRO HG3 H N N 337
PRO HD2 H N N 338
PRO HD3 H N N 339
PRO HXT H N N 340
SER N N N N 341
SER CA C N S 342
SER C C N N 343
SER O O N N 344
SER CB C N N 345
SER OG O N N 346
SER OXT O N N 347
SER H H N N 348
SER H2 H N N 349
SER HA H N N 350
SER HB2 H N N 351
SER HB3 H N N 352
SER HG H N N 353
SER HXT H N N 354
THR N N N N 355
THR CA C N S 356
THR C C N N 357
THR O O N N 358
THR CB C N R 359
THR OG1 O N N 360
THR CG2 C N N 361
THR OXT O N N 362
THR H H N N 363
THR H2 H N N 364
THR HA H N N 365
THR HB H N N 366
THR HG1 H N N 367
THR HG21 H N N 368
THR HG22 H N N 369
THR HG23 H N N 370
THR HXT H N N 371
TRP N N N N 372
TRP CA C N S 373
TRP C C N N 374
TRP O O N N 375
TRP CB C N N 376
TRP CG C Y N 377
TRP CD1 C Y N 378
TRP CD2 C Y N 379
TRP NE1 N Y N 380
TRP CE2 C Y N 381
TRP CE3 C Y N 382
TRP CZ2 C Y N 383
TRP CZ3 C Y N 384
TRP CH2 C Y N 385
TRP OXT O N N 386
TRP H H N N 387
TRP H2 H N N 388
TRP HA H N N 389
TRP HB2 H N N 390
TRP HB3 H N N 391
TRP HD1 H N N 392
TRP HE1 H N N 393
TRP HE3 H N N 394
TRP HZ2 H N N 395
TRP HZ3 H N N 396
TRP HH2 H N N 397
TRP HXT H N N 398
TYR N N N N 399
TYR CA C N S 400
TYR C C N N 401
TYR O O N N 402
TYR CB C N N 403
TYR CG C Y N 404
TYR CD1 C Y N 405
TYR CD2 C Y N 406
TYR CE1 C Y N 407
TYR CE2 C Y N 408
TYR CZ C Y N 409
TYR OH O N N 410
TYR OXT O N N 411
TYR H H N N 412
TYR H2 H N N 413
TYR HA H N N 414
TYR HB2 H N N 415
TYR HB3 H N N 416
TYR HD1 H N N 417
TYR HD2 H N N 418
TYR HE1 H N N 419
TYR HE2 H N N 420
TYR HH H N N 421
TYR HXT H N N 422
VAL N N N N 423
VAL CA C N S 424
VAL C C N N 425
VAL O O N N 426
VAL CB C N N 427
VAL CG1 C N N 428
VAL CG2 C N N 429
VAL OXT O N N 430
VAL H H N N 431
VAL H2 H N N 432
VAL HA H N N 433
VAL HB H N N 434
VAL HG11 H N N 435
VAL HG12 H N N 436
VAL HG13 H N N 437
VAL HG21 H N N 438
VAL HG22 H N N 439
VAL HG23 H N N 440
VAL HXT H N N 441
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BMA C1 C2 sing N N 70
BMA C1 O1 sing N N 71
BMA C1 O5 sing N N 72
BMA C1 H1 sing N N 73
BMA C2 C3 sing N N 74
BMA C2 O2 sing N N 75
BMA C2 H2 sing N N 76
BMA C3 C4 sing N N 77
BMA C3 O3 sing N N 78
BMA C3 H3 sing N N 79
BMA C4 C5 sing N N 80
BMA C4 O4 sing N N 81
BMA C4 H4 sing N N 82
BMA C5 C6 sing N N 83
BMA C5 O5 sing N N 84
BMA C5 H5 sing N N 85
BMA C6 O6 sing N N 86
BMA C6 H61 sing N N 87
BMA C6 H62 sing N N 88
BMA O1 HO1 sing N N 89
BMA O2 HO2 sing N N 90
BMA O3 HO3 sing N N 91
BMA O4 HO4 sing N N 92
BMA O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GLN N CA sing N N 107
GLN N H sing N N 108
GLN N H2 sing N N 109
GLN CA C sing N N 110
GLN CA CB sing N N 111
GLN CA HA sing N N 112
GLN C O doub N N 113
GLN C OXT sing N N 114
GLN CB CG sing N N 115
GLN CB HB2 sing N N 116
GLN CB HB3 sing N N 117
GLN CG CD sing N N 118
GLN CG HG2 sing N N 119
GLN CG HG3 sing N N 120
GLN CD OE1 doub N N 121
GLN CD NE2 sing N N 122
GLN NE2 HE21 sing N N 123
GLN NE2 HE22 sing N N 124
GLN OXT HXT sing N N 125
GLU N CA sing N N 126
GLU N H sing N N 127
GLU N H2 sing N N 128
GLU CA C sing N N 129
GLU CA CB sing N N 130
GLU CA HA sing N N 131
GLU C O doub N N 132
GLU C OXT sing N N 133
GLU CB CG sing N N 134
GLU CB HB2 sing N N 135
GLU CB HB3 sing N N 136
GLU CG CD sing N N 137
GLU CG HG2 sing N N 138
GLU CG HG3 sing N N 139
GLU CD OE1 doub N N 140
GLU CD OE2 sing N N 141
GLU OE2 HE2 sing N N 142
GLU OXT HXT sing N N 143
GLY N CA sing N N 144
GLY N H sing N N 145
GLY N H2 sing N N 146
GLY CA C sing N N 147
GLY CA HA2 sing N N 148
GLY CA HA3 sing N N 149
GLY C O doub N N 150
GLY C OXT sing N N 151
GLY OXT HXT sing N N 152
HIS N CA sing N N 153
HIS N H sing N N 154
HIS N H2 sing N N 155
HIS CA C sing N N 156
HIS CA CB sing N N 157
HIS CA HA sing N N 158
HIS C O doub N N 159
HIS C OXT sing N N 160
HIS CB CG sing N N 161
HIS CB HB2 sing N N 162
HIS CB HB3 sing N N 163
HIS CG ND1 sing Y N 164
HIS CG CD2 doub Y N 165
HIS ND1 CE1 doub Y N 166
HIS ND1 HD1 sing N N 167
HIS CD2 NE2 sing Y N 168
HIS CD2 HD2 sing N N 169
HIS CE1 NE2 sing Y N 170
HIS CE1 HE1 sing N N 171
HIS NE2 HE2 sing N N 172
HIS OXT HXT sing N N 173
ILE N CA sing N N 174
ILE N H sing N N 175
ILE N H2 sing N N 176
ILE CA C sing N N 177
ILE CA CB sing N N 178
ILE CA HA sing N N 179
ILE C O doub N N 180
ILE C OXT sing N N 181
ILE CB CG1 sing N N 182
ILE CB CG2 sing N N 183
ILE CB HB sing N N 184
ILE CG1 CD1 sing N N 185
ILE CG1 HG12 sing N N 186
ILE CG1 HG13 sing N N 187
ILE CG2 HG21 sing N N 188
ILE CG2 HG22 sing N N 189
ILE CG2 HG23 sing N N 190
ILE CD1 HD11 sing N N 191
ILE CD1 HD12 sing N N 192
ILE CD1 HD13 sing N N 193
ILE OXT HXT sing N N 194
LEU N CA sing N N 195
LEU N H sing N N 196
LEU N H2 sing N N 197
LEU CA C sing N N 198
LEU CA CB sing N N 199
LEU CA HA sing N N 200
LEU C O doub N N 201
LEU C OXT sing N N 202
LEU CB CG sing N N 203
LEU CB HB2 sing N N 204
LEU CB HB3 sing N N 205
LEU CG CD1 sing N N 206
LEU CG CD2 sing N N 207
LEU CG HG sing N N 208
LEU CD1 HD11 sing N N 209
LEU CD1 HD12 sing N N 210
LEU CD1 HD13 sing N N 211
LEU CD2 HD21 sing N N 212
LEU CD2 HD22 sing N N 213
LEU CD2 HD23 sing N N 214
LEU OXT HXT sing N N 215
LYS N CA sing N N 216
LYS N H sing N N 217
LYS N H2 sing N N 218
LYS CA C sing N N 219
LYS CA CB sing N N 220
LYS CA HA sing N N 221
LYS C O doub N N 222
LYS C OXT sing N N 223
LYS CB CG sing N N 224
LYS CB HB2 sing N N 225
LYS CB HB3 sing N N 226
LYS CG CD sing N N 227
LYS CG HG2 sing N N 228
LYS CG HG3 sing N N 229
LYS CD CE sing N N 230
LYS CD HD2 sing N N 231
LYS CD HD3 sing N N 232
LYS CE NZ sing N N 233
LYS CE HE2 sing N N 234
LYS CE HE3 sing N N 235
LYS NZ HZ1 sing N N 236
LYS NZ HZ2 sing N N 237
LYS NZ HZ3 sing N N 238
LYS OXT HXT sing N N 239
MET N CA sing N N 240
MET N H sing N N 241
MET N H2 sing N N 242
MET CA C sing N N 243
MET CA CB sing N N 244
MET CA HA sing N N 245
MET C O doub N N 246
MET C OXT sing N N 247
MET CB CG sing N N 248
MET CB HB2 sing N N 249
MET CB HB3 sing N N 250
MET CG SD sing N N 251
MET CG HG2 sing N N 252
MET CG HG3 sing N N 253
MET SD CE sing N N 254
MET CE HE1 sing N N 255
MET CE HE2 sing N N 256
MET CE HE3 sing N N 257
MET OXT HXT sing N N 258
NAG C1 C2 sing N N 259
NAG C1 O1 sing N N 260
NAG C1 O5 sing N N 261
NAG C1 H1 sing N N 262
NAG C2 C3 sing N N 263
NAG C2 N2 sing N N 264
NAG C2 H2 sing N N 265
NAG C3 C4 sing N N 266
NAG C3 O3 sing N N 267
NAG C3 H3 sing N N 268
NAG C4 C5 sing N N 269
NAG C4 O4 sing N N 270
NAG C4 H4 sing N N 271
NAG C5 C6 sing N N 272
NAG C5 O5 sing N N 273
NAG C5 H5 sing N N 274
NAG C6 O6 sing N N 275
NAG C6 H61 sing N N 276
NAG C6 H62 sing N N 277
NAG C7 C8 sing N N 278
NAG C7 N2 sing N N 279
NAG C7 O7 doub N N 280
NAG C8 H81 sing N N 281
NAG C8 H82 sing N N 282
NAG C8 H83 sing N N 283
NAG N2 HN2 sing N N 284
NAG O1 HO1 sing N N 285
NAG O3 HO3 sing N N 286
NAG O4 HO4 sing N N 287
NAG O6 HO6 sing N N 288
PHE N CA sing N N 289
PHE N H sing N N 290
PHE N H2 sing N N 291
PHE CA C sing N N 292
PHE CA CB sing N N 293
PHE CA HA sing N N 294
PHE C O doub N N 295
PHE C OXT sing N N 296
PHE CB CG sing N N 297
PHE CB HB2 sing N N 298
PHE CB HB3 sing N N 299
PHE CG CD1 doub Y N 300
PHE CG CD2 sing Y N 301
PHE CD1 CE1 sing Y N 302
PHE CD1 HD1 sing N N 303
PHE CD2 CE2 doub Y N 304
PHE CD2 HD2 sing N N 305
PHE CE1 CZ doub Y N 306
PHE CE1 HE1 sing N N 307
PHE CE2 CZ sing Y N 308
PHE CE2 HE2 sing N N 309
PHE CZ HZ sing N N 310
PHE OXT HXT sing N N 311
PRO N CA sing N N 312
PRO N CD sing N N 313
PRO N H sing N N 314
PRO CA C sing N N 315
PRO CA CB sing N N 316
PRO CA HA sing N N 317
PRO C O doub N N 318
PRO C OXT sing N N 319
PRO CB CG sing N N 320
PRO CB HB2 sing N N 321
PRO CB HB3 sing N N 322
PRO CG CD sing N N 323
PRO CG HG2 sing N N 324
PRO CG HG3 sing N N 325
PRO CD HD2 sing N N 326
PRO CD HD3 sing N N 327
PRO OXT HXT sing N N 328
SER N CA sing N N 329
SER N H sing N N 330
SER N H2 sing N N 331
SER CA C sing N N 332
SER CA CB sing N N 333
SER CA HA sing N N 334
SER C O doub N N 335
SER C OXT sing N N 336
SER CB OG sing N N 337
SER CB HB2 sing N N 338
SER CB HB3 sing N N 339
SER OG HG sing N N 340
SER OXT HXT sing N N 341
THR N CA sing N N 342
THR N H sing N N 343
THR N H2 sing N N 344
THR CA C sing N N 345
THR CA CB sing N N 346
THR CA HA sing N N 347
THR C O doub N N 348
THR C OXT sing N N 349
THR CB OG1 sing N N 350
THR CB CG2 sing N N 351
THR CB HB sing N N 352
THR OG1 HG1 sing N N 353
THR CG2 HG21 sing N N 354
THR CG2 HG22 sing N N 355
THR CG2 HG23 sing N N 356
THR OXT HXT sing N N 357
TRP N CA sing N N 358
TRP N H sing N N 359
TRP N H2 sing N N 360
TRP CA C sing N N 361
TRP CA CB sing N N 362
TRP CA HA sing N N 363
TRP C O doub N N 364
TRP C OXT sing N N 365
TRP CB CG sing N N 366
TRP CB HB2 sing N N 367
TRP CB HB3 sing N N 368
TRP CG CD1 doub Y N 369
TRP CG CD2 sing Y N 370
TRP CD1 NE1 sing Y N 371
TRP CD1 HD1 sing N N 372
TRP CD2 CE2 doub Y N 373
TRP CD2 CE3 sing Y N 374
TRP NE1 CE2 sing Y N 375
TRP NE1 HE1 sing N N 376
TRP CE2 CZ2 sing Y N 377
TRP CE3 CZ3 doub Y N 378
TRP CE3 HE3 sing N N 379
TRP CZ2 CH2 doub Y N 380
TRP CZ2 HZ2 sing N N 381
TRP CZ3 CH2 sing Y N 382
TRP CZ3 HZ3 sing N N 383
TRP CH2 HH2 sing N N 384
TRP OXT HXT sing N N 385
TYR N CA sing N N 386
TYR N H sing N N 387
TYR N H2 sing N N 388
TYR CA C sing N N 389
TYR CA CB sing N N 390
TYR CA HA sing N N 391
TYR C O doub N N 392
TYR C OXT sing N N 393
TYR CB CG sing N N 394
TYR CB HB2 sing N N 395
TYR CB HB3 sing N N 396
TYR CG CD1 doub Y N 397
TYR CG CD2 sing Y N 398
TYR CD1 CE1 sing Y N 399
TYR CD1 HD1 sing N N 400
TYR CD2 CE2 doub Y N 401
TYR CD2 HD2 sing N N 402
TYR CE1 CZ doub Y N 403
TYR CE1 HE1 sing N N 404
TYR CE2 CZ sing Y N 405
TYR CE2 HE2 sing N N 406
TYR CZ OH sing N N 407
TYR OH HH sing N N 408
TYR OXT HXT sing N N 409
VAL N CA sing N N 410
VAL N H sing N N 411
VAL N H2 sing N N 412
VAL CA C sing N N 413
VAL CA CB sing N N 414
VAL CA HA sing N N 415
VAL C O doub N N 416
VAL C OXT sing N N 417
VAL CB CG1 sing N N 418
VAL CB CG2 sing N N 419
VAL CB HB sing N N 420
VAL CG1 HG11 sing N N 421
VAL CG1 HG12 sing N N 422
VAL CG1 HG13 sing N N 423
VAL CG2 HG21 sing N N 424
VAL CG2 HG22 sing N N 425
VAL CG2 HG23 sing N N 426
VAL OXT HXT sing N N 427
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
3 NAG 1 n
3 NAG 2 n
3 BMA 3 n
#
_atom_sites.entry_id 4N4Z
_atom_sites.fract_transf_matrix[1][1] 0.008037
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.008037
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018598
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_