HEADER HYDROLASE 08-OCT-13 4N4Z TITLE TRYPANOSOMA BRUCEI PROCATHEPSIN B STRUCTURE SOLVED BY SERIAL TITLE 2 MICROCRYSTALLOGRAPHY USING SYNCHROTRON RADIATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PEPTIDASE C (CPC); COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: 907; SOURCE 5 GENE: TB927.6.560; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS PAPAIN FOLD, HYDROLASE, PROPEPTIDE, GLYCOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR C.GATI,G.BOURENKOV,M.KLINGE,D.REHDERS,F.STELLATO,D.OBERTHUER, AUTHOR 2 T.A.WHITE,O.YEVANOV,B.P.SOMMER,S.MOGK,M.DUSZENKO,C.BETZEL, AUTHOR 3 T.R.SCHNEIDER,H.N.CHAPMAN,L.REDECKE REVDAT 5 09-OCT-24 4N4Z 1 HETSYN REVDAT 4 29-JUL-20 4N4Z 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 15-NOV-17 4N4Z 1 REMARK REVDAT 2 08-OCT-14 4N4Z 1 JRNL REVDAT 1 05-FEB-14 4N4Z 0 JRNL AUTH C.GATI,G.BOURENKOV,M.KLINGE,D.REHDERS,F.STELLATO,D.OBERTHUR, JRNL AUTH 2 O.YEFANOV,B.P.SOMMER,S.MOGK,M.DUSZENKO,C.BETZEL, JRNL AUTH 3 T.R.SCHNEIDER,H.N.CHAPMAN,L.REDECKE JRNL TITL SERIAL CRYSTALLOGRAPHY ON IN VIVO GROWN MICROCRYSTALS USING JRNL TITL 2 SYNCHROTRON RADIATION. JRNL REF IUCRJ V. 1 87 2014 JRNL REFN ESSN 2052-2525 JRNL PMID 25075324 JRNL DOI 10.1107/S2052252513033939 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 305 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 471 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.519 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.484 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2542 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2226 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3469 ; 1.321 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5106 ; 0.850 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 5.342 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;27.614 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;16.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2903 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 611 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 80 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2398 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : KB MIRRORS, SI 111 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6448 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 88.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SPONTANEOUS FORMATION OF NEEDLE-SHAPED REMARK 280 MICROCRYSTALS IN SF9 CELLS INFECTED WITH RECOMBINANT BACULOVIRUS REMARK 280 CONTAINING THE GENE ENCODING THE PRE-PRO FORM OF TRYPANOSOMA REMARK 280 BRUCEI CATHEPSIN B, PH 7.4, CRYSTALLIZATION IN VIVO WITHIN REMARK 280 LIVING SF9 INSECT CELLS, TEMPERATURE 310.15 K AS DESCRIBED IN REMARK 280 KOOPMANN ET AL. 2012 NATURE METHODS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.21000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.88500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.21000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.88500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.21000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.88500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.88500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 3 REMARK 465 MET A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 CYS A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 PHE A 10 REMARK 465 CYS A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 LYS A 73 REMARK 465 ASN A 74 REMARK 465 ASN A 75 REMARK 465 ASN A 76 REMARK 465 ALA A 77 REMARK 465 ALA A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 28 NZ LYS A 82 4545 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 304 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -132.26 51.27 REMARK 500 ALA A 118 68.80 -106.49 REMARK 500 ALA A 127 -71.84 -71.40 REMARK 500 CYS A 136 -71.79 -90.58 REMARK 500 MET A 138 -30.62 -136.06 REMARK 500 HIS A 194 41.23 -88.55 REMARK 500 THR A 233 149.35 -172.21 REMARK 500 VAL A 287 -3.94 -141.26 REMARK 500 TRP A 304 67.93 -116.80 REMARK 500 ASN A 305 175.34 83.30 REMARK 500 SER A 321 45.14 71.99 REMARK 500 CYS A 323 29.76 40.73 REMARK 500 ASN A 338 -160.57 66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HWY RELATED DB: PDB REMARK 900 THE SAME PROTEIN STRUCTURE SOLVED FROM IDENTICAL IN VIVO GROWN REMARK 900 CRYSTALS BY SERIAL FEMTOSECOND CYSTALLOGRAPHY AT AN FEL SOURCE REMARK 900 (REDECKE ET AL. 2013). DBREF 4N4Z A 1 340 UNP D6XHE1 D6XHE1_TRYB2 1 340 SEQRES 1 A 340 MET HIS LEU MET ARG ALA CYS ILE THR PHE CYS ILE ALA SEQRES 2 A 340 SER THR ALA VAL VAL ALA VAL ASN ALA ALA LEU VAL ALA SEQRES 3 A 340 GLU ASP ALA PRO VAL LEU SER LYS ALA PHE VAL ASP ARG SEQRES 4 A 340 VAL ASN ARG LEU ASN ARG GLY ILE TRP LYS ALA LYS TYR SEQRES 5 A 340 ASP GLY VAL MET GLN ASN ILE THR LEU ARG GLU ALA LYS SEQRES 6 A 340 ARG LEU ASN GLY VAL ILE LYS LYS ASN ASN ASN ALA SER SEQRES 7 A 340 ILE LEU PRO LYS ARG ARG PHE THR GLU GLU GLU ALA ARG SEQRES 8 A 340 ALA PRO LEU PRO SER SER PHE ASP SER ALA GLU ALA TRP SEQRES 9 A 340 PRO ASN CYS PRO THR ILE PRO GLN ILE ALA ASP GLN SER SEQRES 10 A 340 ALA CYS GLY SER CYS TRP ALA VAL ALA ALA ALA SER ALA SEQRES 11 A 340 MET SER ASP ARG PHE CYS THR MET GLY GLY VAL GLN ASP SEQRES 12 A 340 VAL HIS ILE SER ALA GLY ASP LEU LEU ALA CYS CYS SER SEQRES 13 A 340 ASP CYS GLY ASP GLY CYS ASN GLY GLY ASP PRO ASP ARG SEQRES 14 A 340 ALA TRP ALA TYR PHE SER SER THR GLY LEU VAL SER ASP SEQRES 15 A 340 TYR CYS GLN PRO TYR PRO PHE PRO HIS CYS SER HIS HIS SEQRES 16 A 340 SER LYS SER LYS ASN GLY TYR PRO PRO CYS SER GLN PHE SEQRES 17 A 340 ASN PHE ASP THR PRO LYS CYS ASN TYR THR CYS ASP ASP SEQRES 18 A 340 PRO THR ILE PRO VAL VAL ASN TYR ARG SER TRP THR SER SEQRES 19 A 340 TYR ALA LEU GLN GLY GLU ASP ASP TYR MET ARG GLU LEU SEQRES 20 A 340 PHE PHE ARG GLY PRO PHE GLU VAL ALA PHE ASP VAL TYR SEQRES 21 A 340 GLU ASP PHE ILE ALA TYR ASN SER GLY VAL TYR HIS HIS SEQRES 22 A 340 VAL SER GLY GLN TYR LEU GLY GLY HIS ALA VAL ARG LEU SEQRES 23 A 340 VAL GLY TRP GLY THR SER ASN GLY VAL PRO TYR TRP LYS SEQRES 24 A 340 ILE ALA ASN SER TRP ASN THR GLU TRP GLY MET ASP GLY SEQRES 25 A 340 TYR PHE LEU ILE ARG ARG GLY SER SER GLU CYS GLY ILE SEQRES 26 A 340 GLU ASP GLY GLY SER ALA GLY ILE PRO LEU ALA PRO ASN SEQRES 27 A 340 THR ALA MODRES 4N4Z ASN A 216 ASN GLYCOSYLATION SITE MODRES 4N4Z ASN A 58 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 HELIX 1 1 SER A 33 ASN A 44 1 12 HELIX 2 2 THR A 60 LEU A 67 1 8 HELIX 3 3 THR A 86 ARG A 91 1 6 HELIX 4 4 SER A 100 TRP A 104 1 5 HELIX 5 5 SER A 121 MET A 138 1 18 HELIX 6 6 SER A 147 CYS A 155 1 9 HELIX 7 7 ASP A 166 THR A 177 1 12 HELIX 8 8 GLN A 238 GLY A 251 1 14 HELIX 9 9 GLU A 261 ALA A 265 1 5 HELIX 10 10 SER A 321 ILE A 325 5 5 SHEET 1 A 2 TRP A 48 ALA A 50 0 SHEET 2 A 2 TYR A 266 GLY A 269 -1 O ASN A 267 N LYS A 49 SHEET 1 B 5 PHE A 98 ASP A 99 0 SHEET 2 B 5 TYR A 278 THR A 291 -1 O TRP A 289 N PHE A 98 SHEET 3 B 5 PHE A 253 TYR A 260 -1 N VAL A 259 O GLY A 280 SHEET 4 B 5 GLY A 329 PRO A 334 -1 O SER A 330 N GLU A 254 SHEET 5 B 5 SER A 231 LEU A 237 -1 N TYR A 235 O ALA A 331 SHEET 1 C 4 PHE A 98 ASP A 99 0 SHEET 2 C 4 TYR A 278 THR A 291 -1 O TRP A 289 N PHE A 98 SHEET 3 C 4 PRO A 296 ALA A 301 -1 O TYR A 297 N GLY A 290 SHEET 4 C 4 TYR A 313 ARG A 317 -1 O PHE A 314 N ILE A 300 SHEET 1 D 2 GLY A 159 GLY A 161 0 SHEET 2 D 2 GLY A 164 GLY A 165 -1 O GLY A 164 N ASP A 160 SSBOND 1 CYS A 107 CYS A 136 1555 1555 1.97 SSBOND 2 CYS A 119 CYS A 162 1555 1555 2.05 SSBOND 3 CYS A 154 CYS A 215 1555 1555 2.06 SSBOND 4 CYS A 155 CYS A 158 1555 1555 2.06 SSBOND 5 CYS A 184 CYS A 219 1555 1555 2.04 SSBOND 6 CYS A 192 CYS A 205 1555 1555 2.05 LINK ND2 ASN A 58 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 216 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 CRYST1 124.420 124.420 53.770 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018598 0.00000