HEADER HYDROLASE 09-OCT-13 4N5H TITLE CRYSTAL STRUCTURE OF ESTERASE B FROM LACTOBACILLUS RHAMNOSIS (HN001) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE/LIPASE; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 568704; SOURCE 4 STRAIN: LC 705; SOURCE 5 GENE: LC705_02872, LRH_10360; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX 6P3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX_6P3_ESTB KEYWDS ALPHA/BETA HYDROLASE FOLD, HYDROLASE, ESTERASE ACYLTRANSFERASE, KEYWDS 2 HYDROLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.D.BENNETT,R.HOLLAND,T.S.LOO,C.A.SMITH,G.E.NORRIS,M.-L.DELABRE, AUTHOR 2 B.F.ANDERSON REVDAT 3 03-APR-24 4N5H 1 REMARK REVDAT 2 28-FEB-24 4N5H 1 REMARK SEQADV LINK REVDAT 1 15-OCT-14 4N5H 0 JRNL AUTH M.D.BENNETT,B.F.ANDERSON,G.E.NORRIS,M.-L.DELABRE,C.A.SMITH JRNL TITL CRYSTAL STRUCTURE OF ESTERASE B FROM LACTOBACILLUS RHAMNOSIS JRNL TITL 2 (HN001) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1894 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.545 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2606 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3548 ; 2.011 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5513 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.429 ;24.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;13.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3045 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 648 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : AXCO PX50 CAPILLARY FOCUSING REMARK 200 OPTIC AND MONOCHROMATOR REMARK 200 OPTICS : AXCO PX50 CAPILLARY FOCUSING REMARK 200 OPTIC AND MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 31.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.930 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.83 REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PARTIAL STRUCTURE DERIVED FROM A LOWER RESOLUTION REMARK 200 SE-MET DATA SET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE, 200MM CACL2, 20% REMARK 280 ISOPROPYL ALCOHOL, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.75100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.75100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.71650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.75100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.75100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.71650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.75100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.75100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.71650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.75100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.75100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.71650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X-1/2, -Y-1/2, Z-3/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE X 316 REMARK 465 GLU X 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP X 3 OD1 OD2 REMARK 470 GLU X 5 CD OE1 OE2 REMARK 470 LYS X 60 CG CD CE NZ REMARK 470 GLU X 163 CD OE1 OE2 REMARK 470 LYS X 306 CD CE NZ REMARK 470 GLU X 315 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 666 O HOH X 751 1.96 REMARK 500 O HOH X 603 O HOH X 701 2.15 REMARK 500 O HOH X 654 O HOH X 709 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 21 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG X 82 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG X 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG X 90 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU X 221 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN X 51 52.21 -90.64 REMARK 500 TRP X 77 -8.52 68.96 REMARK 500 ASN X 85 30.63 -99.41 REMARK 500 SER X 146 -115.53 58.38 REMARK 500 ASN X 174 42.51 -89.79 REMARK 500 VAL X 186 61.71 -104.02 REMARK 500 GLU X 188 69.35 -119.77 REMARK 500 HIS X 220 35.26 -141.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR X 65 OG1 REMARK 620 2 THR X 65 O 75.4 REMARK 620 3 HOH X 569 O 102.9 85.0 REMARK 620 4 HOH X 653 O 67.0 141.4 94.7 REMARK 620 5 HOH X 773 O 149.1 75.9 63.1 137.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N5I RELATED DB: PDB DBREF 4N5H X 1 317 UNP C7TF14 C7TF14_LACRL 1 317 SEQADV 4N5H VAL X 218 UNP C7TF14 ALA 218 ENGINEERED MUTATION SEQRES 1 X 317 MET ALA ASP GLU GLU ALA MET LEU ALA LYS VAL GLN ALA SEQRES 2 X 317 SER TRP ALA GLN THR ALA ALA ARG ASP LYS ALA ARG TYR SEQRES 3 X 317 ALA ASP GLU ARG VAL PRO GLU ASP VAL HIS TRP GLU THR SEQRES 4 X 317 GLU TYR ARG TYR GLU GLN SER ALA ASP PRO GLN GLN THR SEQRES 5 X 317 LEU ASN LEU TYR TYR PRO ALA LYS ARG ARG ASN ALA THR SEQRES 6 X 317 MET PRO THR VAL ILE ASP ILE HIS GLY GLY GLY TRP PHE SEQRES 7 X 317 TYR GLY ASP ARG ASN LEU ASN ARG ASN TYR CYS ARG TYR SEQRES 8 X 317 LEU ALA SER GLN GLY TYR ALA VAL MET GLY MET GLY TYR SEQRES 9 X 317 ARG LEU LEU PRO ASP VAL ASP LEU ARG GLY GLN ILE GLN SEQRES 10 X 317 ASP ILE PHE ALA SER LEU ARG TRP LEU SER HIS PHE GLY SEQRES 11 X 317 PRO GLN ARG GLY PHE ASP LEU ASP HIS VAL LEU LEU THR SEQRES 12 X 317 GLY ASP SER ALA GLY GLY HIS LEU ALA SER LEU VAL ALA SEQRES 13 X 317 CYS ILE GLN GLN SER ALA GLU LEU GLN GLU LEU PHE GLY SEQRES 14 X 317 VAL SER ARG VAL ASN PHE ASN PHE THR LEU VAL ALA LEU SEQRES 15 X 317 VAL CYS PRO VAL ALA GLU PRO SER LYS LEU PRO GLU ALA SEQRES 16 X 317 ALA GLY ASP MET SER ASP MET ALA ALA PHE TYR LEU ASP SEQRES 17 X 317 LYS LEU SER GLY GLY ASP GLN ALA LEU VAL ASP HIS LEU SEQRES 18 X 317 ASN PHE SER GLN VAL VAL LYS GLY LEU ASP LEU PRO PRO SEQRES 19 X 317 PHE MET LEU ILE GLY GLY GLN ASN ASP SER PHE TYR LEU SEQRES 20 X 317 GLN SER GLN ALA LEU LEU LYS VAL PHE ASP ALA ASN HIS SEQRES 21 X 317 VAL THR TYR THR THR LYS LEU TRP PRO ALA SER ALA GLY SEQRES 22 X 317 PRO HIS LEU LYS HIS VAL PHE ASN VAL GLN HIS TRP GLU SEQRES 23 X 317 TRP PRO GLU SER ILE GLU THR ASN LEU GLU MET LEU ARG SEQRES 24 X 317 THR PHE ASP ALA LEU SER LYS GLN GLN ASP GLN ALA GLU SEQRES 25 X 317 GLU ASN GLU PHE GLU HET IPA X 401 4 HET IPA X 402 4 HET IPA X 403 4 HET CL X 404 1 HET CA X 405 1 HETNAM IPA ISOPROPYL ALCOHOL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN IPA 2-PROPANOL FORMUL 2 IPA 3(C3 H8 O) FORMUL 5 CL CL 1- FORMUL 6 CA CA 2+ FORMUL 7 HOH *299(H2 O) HELIX 1 1 MET X 1 GLU X 29 1 29 HELIX 2 2 ASN X 85 GLN X 95 1 11 HELIX 3 3 ASP X 111 GLY X 130 1 20 HELIX 4 4 PRO X 131 ARG X 133 5 3 HELIX 5 5 SER X 146 GLN X 159 1 14 HELIX 6 6 SER X 161 GLY X 169 1 9 HELIX 7 7 GLU X 188 ALA X 195 5 8 HELIX 8 8 GLY X 197 MET X 202 1 6 HELIX 9 9 MET X 202 GLY X 212 1 11 HELIX 10 10 ASP X 214 ASP X 219 1 6 HELIX 11 11 ASN X 222 VAL X 227 1 6 HELIX 12 12 PHE X 245 ASN X 259 1 15 HELIX 13 13 PRO X 269 GLY X 273 5 5 HELIX 14 14 VAL X 279 HIS X 284 1 6 HELIX 15 15 TRP X 287 GLU X 312 1 26 SHEET 1 A 8 VAL X 35 ARG X 42 0 SHEET 2 A 8 THR X 52 PRO X 58 -1 O LEU X 55 N GLU X 38 SHEET 3 A 8 ALA X 98 MET X 102 -1 O VAL X 99 N TYR X 56 SHEET 4 A 8 MET X 66 ILE X 72 1 N ASP X 71 O MET X 100 SHEET 5 A 8 PHE X 135 ASP X 145 1 O LEU X 141 N THR X 68 SHEET 6 A 8 LEU X 179 VAL X 183 1 O VAL X 183 N GLY X 144 SHEET 7 A 8 PHE X 235 GLY X 240 1 O MET X 236 N LEU X 182 SHEET 8 A 8 TYR X 263 TRP X 268 1 O TRP X 268 N GLY X 239 LINK OG1 THR X 65 CA CA X 405 1555 1555 2.45 LINK O THR X 65 CA CA X 405 1555 1555 2.78 LINK CA CA X 405 O HOH X 569 1555 1555 2.54 LINK CA CA X 405 O HOH X 653 1555 1555 2.62 LINK CA CA X 405 O HOH X 773 1555 1555 2.45 CISPEP 1 LEU X 107 PRO X 108 0 6.69 SITE 1 AC1 4 LYS X 266 TRP X 268 HOH X 651 HOH X 680 SITE 1 AC2 3 ARG X 86 HOH X 561 HOH X 699 SITE 1 AC3 4 GLN X 132 PRO X 288 GLU X 289 GLU X 292 SITE 1 AC4 2 ARG X 30 TRP X 37 SITE 1 AC5 5 THR X 65 GLU X 166 HOH X 569 HOH X 653 SITE 2 AC5 5 HOH X 773 CRYST1 109.502 109.502 59.433 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016826 0.00000