HEADER TRANSFERASE/DNA 10-OCT-13 4N5S TITLE TERNARY COMPLEX STRUCTURE OF KLENOW FRAGMENT OF TAQ DNA POLYMERASE TITLE 2 I707L MUTANT (CS3C KLENTAQ) WITH DNA AND DDCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRIMER STRAND; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*A*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: TEMPLATE STRAND; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: KLENOW FRAGMENT (UNP RESIDUES 281-832); COMPND 15 SYNONYM: TAQ POLYMERASE 1; COMPND 16 EC: 2.7.7.7; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 7 ORGANISM_TAXID: 271; SOURCE 8 GENE: POLA, POL1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU REVDAT 3 20-SEP-23 4N5S 1 REMARK SEQADV LINK REVDAT 2 11-FEB-15 4N5S 1 JRNL REVDAT 1 21-JAN-15 4N5S 0 JRNL AUTH E.Y.WU,A.R.WALSH,E.C.MATERNE,E.P.HILTNER,B.ZIELINSKI, JRNL AUTH 2 B.R.MILLER,L.MAWBY,E.MODESTE,C.A.PARISH,W.M.BARNES, JRNL AUTH 3 M.B.KERMEKCHIEV JRNL TITL A CONSERVATIVE ISOLEUCINE TO LEUCINE MUTATION CAUSES MAJOR JRNL TITL 2 REARRANGEMENTS AND COLD SENSITIVITY IN KLENTAQ1 DNA JRNL TITL 3 POLYMERASE. JRNL REF BIOCHEMISTRY V. 54 881 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25537790 JRNL DOI 10.1021/BI501198F REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 64469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4286 REMARK 3 NUCLEIC ACID ATOMS : 511 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5003 ; 0.011 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 4609 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6884 ; 1.557 ; 1.898 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10586 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 5.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;29.566 ;22.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;13.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;19.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5241 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1145 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64469 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 32.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 20 MM MANGANESE REMARK 280 CHLORIDE, 0.1 M SODIUM ACETATE, 10% W/V PEG4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.88633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.77267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.77267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.88633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA C 201 REMARK 465 DA C 202 REMARK 465 MET A 280 REMARK 465 LEU A 281 REMARK 465 LEU A 282 REMARK 465 HIS A 283 REMARK 465 GLU A 284 REMARK 465 PHE A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 GLU A 832 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 203 P OP1 OP2 O5' C5' C4' O4' REMARK 470 DA C 203 C3' C2' C1' N9 C8 N7 C5 REMARK 470 DA C 203 C6 N6 N1 C2 N3 C4 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 GLU A 694 CG CD OE1 OE2 REMARK 470 ARG A 704 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 108 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 559 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET A 761 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 381 112.11 -164.72 REMARK 500 THR A 399 -167.48 -109.37 REMARK 500 VAL A 433 -67.41 -124.94 REMARK 500 TYR A 545 -55.87 -120.91 REMARK 500 VAL A 586 -18.11 -147.29 REMARK 500 ALA A 683 54.40 38.33 REMARK 500 HIS A 784 -60.94 71.94 REMARK 500 TYR A 811 88.21 -164.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 328 O REMARK 620 2 HOH B 329 O 89.5 REMARK 620 3 HOH B 330 O 92.4 89.9 REMARK 620 4 HOH B 331 O 81.5 94.6 172.4 REMARK 620 5 HOH B 333 O 91.9 174.7 85.0 90.6 REMARK 620 6 HOH A1339 O 174.0 91.3 93.5 92.6 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 305 O REMARK 620 2 ASP A 610 OD2 94.7 REMARK 620 3 ASP A 785 OD1 150.2 114.7 REMARK 620 4 DCT A 907 O1A 82.4 106.8 84.8 REMARK 620 5 HOH A1014 O 89.3 100.5 89.6 152.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 904 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 443 NE2 REMARK 620 2 HOH A1342 O 75.2 REMARK 620 3 HOH A1343 O 97.5 98.9 REMARK 620 4 HOH A1344 O 92.4 164.1 92.4 REMARK 620 5 HOH A1345 O 167.0 92.9 89.3 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD1 REMARK 620 2 TYR A 611 O 85.8 REMARK 620 3 ASP A 785 OD2 92.3 88.3 REMARK 620 4 DCT A 907 O1G 85.5 92.4 177.7 REMARK 620 5 DCT A 907 O1B 170.1 88.5 95.7 86.5 REMARK 620 6 DCT A 907 O1A 102.0 171.9 89.2 90.4 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 906 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 721 OE2 REMARK 620 2 HOH A1111 O 87.4 REMARK 620 3 HOH A1240 O 90.5 90.0 REMARK 620 4 HOH A1442 O 97.5 102.8 165.2 REMARK 620 5 HOH A1443 O 170.3 84.7 83.9 89.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 905 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 825 OE1 REMARK 620 2 HOH A1356 O 73.2 REMARK 620 3 HOH A1357 O 72.4 79.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 903 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1236 O REMARK 620 2 HOH A1331 O 85.8 REMARK 620 3 HOH A1332 O 90.2 176.0 REMARK 620 4 HOH A1333 O 173.6 89.0 95.0 REMARK 620 5 HOH A1334 O 96.3 87.6 92.6 87.1 REMARK 620 6 HOH A1335 O 96.2 90.5 90.3 80.2 167.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 911 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N56 RELATED DB: PDB REMARK 900 CS3C KLENTAQ-DNA COMPLEX WITH NO NUCLEOTIDE DBREF 4N5S A 281 832 UNP P19821 DPO1_THEAQ 281 832 DBREF 4N5S B 101 112 PDB 4N5S 4N5S 101 112 DBREF 4N5S C 201 216 PDB 4N5S 4N5S 201 216 SEQADV 4N5S MET A 280 UNP P19821 INITIATING METHIONINE SEQADV 4N5S LEU A 707 UNP P19821 ILE 707 ENGINEERED MUTATION SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC SEQRES 1 C 16 DA DA DA DG DG DG DC DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC SEQRES 1 A 553 MET LEU LEU HIS GLU PHE GLY LEU LEU GLU SER PRO LYS SEQRES 2 A 553 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA SEQRES 3 A 553 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP SEQRES 4 A 553 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG SEQRES 5 A 553 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP SEQRES 6 A 553 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER SEQRES 7 A 553 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY SEQRES 8 A 553 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER SEQRES 9 A 553 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY SEQRES 10 A 553 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER SEQRES 11 A 553 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY SEQRES 12 A 553 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG SEQRES 13 A 553 PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY SEQRES 14 A 553 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU SEQRES 15 A 553 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL SEQRES 16 A 553 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG SEQRES 17 A 553 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU SEQRES 18 A 553 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER SEQRES 19 A 553 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS SEQRES 20 A 553 PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR SEQRES 21 A 553 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU SEQRES 22 A 553 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN SEQRES 23 A 553 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP SEQRES 24 A 553 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY SEQRES 25 A 553 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP SEQRES 26 A 553 LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG SEQRES 27 A 553 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG SEQRES 28 A 553 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SEQRES 29 A 553 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO SEQRES 30 A 553 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL SEQRES 31 A 553 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU SEQRES 32 A 553 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG SEQRES 33 A 553 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP LEU GLU SEQRES 34 A 553 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU SEQRES 35 A 553 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU SEQRES 36 A 553 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET SEQRES 37 A 553 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU SEQRES 38 A 553 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU SEQRES 39 A 553 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU SEQRES 40 A 553 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL SEQRES 41 A 553 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO SEQRES 42 A 553 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU SEQRES 43 A 553 ASP TRP LEU SER ALA LYS GLU MODRES 4N5S DOC B 112 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC B 112 18 HET MN B 201 1 HET MG A 901 1 HET MN A 902 1 HET MN A 903 1 HET MN A 904 1 HET MN A 905 1 HET MN A 906 1 HET DCT A 907 27 HET EPE A 908 15 HET ACT A 909 4 HET ACT A 910 4 HET GOL A 911 6 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 4 MN 6(MN 2+) FORMUL 5 MG MG 2+ FORMUL 11 DCT C9 H16 N3 O12 P3 FORMUL 12 EPE C8 H18 N2 O4 S FORMUL 13 ACT 2(C2 H3 O2 1-) FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *534(H2 O) HELIX 1 1 GLU A 337 ARG A 343 1 7 HELIX 2 2 LEU A 352 GLU A 363 1 12 HELIX 3 3 ASP A 372 ASP A 381 1 10 HELIX 4 4 THR A 386 GLY A 395 1 10 HELIX 5 5 GLU A 401 LEU A 420 1 20 HELIX 6 6 GLU A 423 VAL A 433 1 11 HELIX 7 7 VAL A 433 GLY A 448 1 16 HELIX 8 8 ASP A 452 GLY A 479 1 28 HELIX 9 9 SER A 486 ASP A 496 1 11 HELIX 10 10 SER A 515 LEU A 522 1 8 HELIX 11 11 PRO A 527 TYR A 545 1 19 HELIX 12 12 PRO A 548 ILE A 553 5 6 HELIX 13 13 THR A 588 ARG A 596 1 9 HELIX 14 14 GLN A 613 GLY A 624 1 12 HELIX 15 15 ASP A 625 GLU A 634 1 10 HELIX 16 16 ASP A 637 GLY A 648 1 12 HELIX 17 17 PRO A 650 VAL A 654 5 5 HELIX 18 18 ASP A 655 TYR A 671 1 17 HELIX 19 19 SER A 674 ALA A 683 1 10 HELIX 20 20 PRO A 685 PHE A 700 1 16 HELIX 21 21 PHE A 700 GLY A 718 1 19 HELIX 22 22 PRO A 731 ALA A 735 5 5 HELIX 23 23 VAL A 737 MET A 775 1 39 HELIX 24 24 ARG A 795 GLY A 809 1 15 SHEET 1 A 4 GLU A 295 ALA A 297 0 SHEET 2 A 4 ARG A 331 ARG A 334 1 O VAL A 332 N GLU A 295 SHEET 3 A 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 A 4 PHE A 306 LEU A 311 -1 N PHE A 306 O ALA A 327 SHEET 1 B 2 ARG A 450 LEU A 451 0 SHEET 2 B 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 C 2 ARG A 563 ASN A 565 0 SHEET 2 C 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 D 4 ARG A 778 GLN A 782 0 SHEET 2 D 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 D 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 D 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 E 2 TYR A 719 GLU A 721 0 SHEET 2 E 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DOC B 112 1555 1555 1.59 LINK MN MN B 201 O HOH B 328 1555 1555 2.17 LINK MN MN B 201 O HOH B 329 1555 1555 2.15 LINK MN MN B 201 O HOH B 330 1555 1555 2.13 LINK MN MN B 201 O HOH B 331 1555 1555 2.28 LINK MN MN B 201 O HOH B 333 1555 1555 2.26 LINK MN MN B 201 O HOH A1339 1555 1555 2.19 LINK O HOH B 305 MG MG A 901 1555 1555 2.42 LINK NE2 HIS A 443 MN MN A 904 1555 1555 2.33 LINK OD2 ASP A 610 MG MG A 901 1555 1555 2.27 LINK OD1 ASP A 610 MN MN A 902 1555 1555 2.13 LINK O TYR A 611 MN MN A 902 1555 1555 2.19 LINK OE2 GLU A 721 MN MN A 906 1555 1555 2.09 LINK OD1 ASP A 785 MG MG A 901 1555 1555 2.36 LINK OD2 ASP A 785 MN MN A 902 1555 1555 2.06 LINK OE1 GLU A 825 MN MN A 905 1555 1555 1.80 LINK MG MG A 901 O1A DCT A 907 1555 1555 2.39 LINK MG MG A 901 O HOH A1014 1555 1555 2.40 LINK MN MN A 902 O1G DCT A 907 1555 1555 2.13 LINK MN MN A 902 O1B DCT A 907 1555 1555 2.14 LINK MN MN A 902 O1A DCT A 907 1555 1555 2.25 LINK MN MN A 903 O HOH A1236 1555 1555 2.14 LINK MN MN A 903 O HOH A1331 1555 1555 2.09 LINK MN MN A 903 O HOH A1332 1555 1555 2.28 LINK MN MN A 903 O HOH A1333 1555 1555 2.32 LINK MN MN A 903 O HOH A1334 1555 1555 2.19 LINK MN MN A 903 O HOH A1335 1555 1555 2.26 LINK MN MN A 904 O HOH A1342 1555 1555 2.19 LINK MN MN A 904 O HOH A1343 1555 1555 2.07 LINK MN MN A 904 O HOH A1344 1555 1555 2.27 LINK MN MN A 904 O HOH A1345 1555 1555 2.16 LINK MN MN A 905 O HOH A1356 1555 1555 2.24 LINK MN MN A 905 O HOH A1357 1555 1555 2.48 LINK MN MN A 906 O HOH A1111 1555 1555 2.34 LINK MN MN A 906 O HOH A1240 1555 1555 2.32 LINK MN MN A 906 O HOH A1442 1555 1555 2.22 LINK MN MN A 906 O HOH A1443 1555 1555 2.35 CISPEP 1 TRP A 299 PRO A 300 0 -1.64 CISPEP 2 ASP A 578 PRO A 579 0 3.76 SITE 1 AC1 6 HOH A1339 HOH B 328 HOH B 329 HOH B 330 SITE 2 AC1 6 HOH B 331 HOH B 333 SITE 1 AC2 7 ASP A 610 ASP A 785 MN A 902 DCT A 907 SITE 2 AC2 7 HOH A1014 DOC B 112 HOH B 305 SITE 1 AC3 5 ASP A 610 TYR A 611 ASP A 785 MG A 901 SITE 2 AC3 5 DCT A 907 SITE 1 AC4 6 HOH A1236 HOH A1331 HOH A1332 HOH A1333 SITE 2 AC4 6 HOH A1334 HOH A1335 SITE 1 AC5 5 HIS A 443 HOH A1342 HOH A1343 HOH A1344 SITE 2 AC5 5 HOH A1345 SITE 1 AC6 4 GLU A 462 GLU A 825 HOH A1356 HOH A1357 SITE 1 AC7 5 GLU A 721 HOH A1111 HOH A1240 HOH A1442 SITE 2 AC7 5 HOH A1443 SITE 1 AC8 25 ARG A 573 ASP A 610 TYR A 611 SER A 612 SITE 2 AC8 25 GLN A 613 ILE A 614 GLU A 615 HIS A 639 SITE 3 AC8 25 ARG A 659 LYS A 663 PHE A 667 ASP A 785 SITE 4 AC8 25 MG A 901 MN A 902 HOH A1003 HOH A1009 SITE 5 AC8 25 HOH A1018 HOH A1100 HOH A1365 HOH A1387 SITE 6 AC8 25 DOC B 112 HOH B 304 HOH B 305 DG C 204 SITE 7 AC8 25 DG C 205 SITE 1 AC9 13 ARG A 563 ASN A 565 SER A 577 HOH A1088 SITE 2 AC9 13 HOH A1133 HOH A1268 HOH A1336 DG C 208 SITE 3 AC9 13 DC C 209 HOH C 303 HOH C 306 HOH C 310 SITE 4 AC9 13 HOH C 339 SITE 1 BC1 7 ASN A 485 SER A 486 ARG A 487 HOH A1066 SITE 2 BC1 7 HOH A1180 DG C 211 DT C 212 SITE 1 BC2 6 LEU A 311 ARG A 405 HOH A1187 HOH A1224 SITE 2 BC2 6 HOH A1333 HOH A1335 SITE 1 BC3 5 LEU A 670 TYR A 671 GLY A 672 ARG A 746 SITE 2 BC3 5 HOH A1444 CRYST1 107.657 107.657 89.659 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009289 0.005363 0.000000 0.00000 SCALE2 0.000000 0.010726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011153 0.00000