HEADER SIGNALING PROTEIN 13-OCT-13 4N6J TITLE CRYSTAL STRUCTURE OF HUMAN STRIATIN-3 COILED COIL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRIATIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 86-131; COMPND 5 SYNONYM: CELL CYCLE AUTOANTIGEN SG2NA, S/G2 ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GS2NA, SG2NA, STRN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HST-PET28A KEYWDS WD40, SCAFFOLDING PROTEIN, PP2A, CCM3, CAM, CAV, RASSF., SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,Z.SHI,Z.ZHOU REVDAT 2 25-DEC-19 4N6J 1 AUTHOR JRNL SEQADV LINK REVDAT 1 26-FEB-14 4N6J 0 JRNL AUTH C.CHEN,Z.SHI,W.ZHANG,M.CHEN,F.HE,Z.ZHANG,Y.WANG,M.FENG, JRNL AUTH 2 W.WANG,Y.ZHAO,J.H.BROWN,S.JIAO,Z.ZHOU JRNL TITL STRIATINS CONTAIN A NONCANONICAL COILED COIL THAT BINDS JRNL TITL 2 PROTEIN PHOSPHATASE 2A A SUBUNIT TO FORM A 2:2 JRNL TITL 3 HETEROTETRAMERIC CORE OF STRIATIN-INTERACTING PHOSPHATASE JRNL TITL 4 AND KINASE (STRIPAK) COMPLEX. JRNL REF J.BIOL.CHEM. V. 289 9651 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24550388 JRNL DOI 10.1074/JBC.M113.529297 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5035 - 4.3072 1.00 1266 139 0.2229 0.2688 REMARK 3 2 4.3072 - 3.4204 1.00 1265 142 0.1693 0.1780 REMARK 3 3 3.4204 - 2.9885 1.00 1296 152 0.2083 0.2169 REMARK 3 4 2.9885 - 2.7155 1.00 1292 132 0.1996 0.2939 REMARK 3 5 2.7155 - 2.5210 1.00 1261 142 0.2083 0.2454 REMARK 3 6 2.5210 - 2.3724 1.00 1254 148 0.2206 0.2977 REMARK 3 7 2.3724 - 2.2536 0.99 1245 133 0.2104 0.2584 REMARK 3 8 2.2536 - 2.1556 1.00 1290 138 0.2200 0.3469 REMARK 3 9 2.1556 - 2.0726 1.00 1296 145 0.1938 0.2759 REMARK 3 10 2.0726 - 2.0010 0.97 1188 133 0.2151 0.3064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 791 REMARK 3 ANGLE : 0.924 1046 REMARK 3 CHIRALITY : 0.056 113 REMARK 3 PLANARITY : 0.003 136 REMARK 3 DIHEDRAL : 14.063 332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 4N6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 1W2B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 24.19 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 0.2M MGCL2, 23% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.59200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.79600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.79600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.59200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 131 REMARK 465 SER B 82 REMARK 465 THR B 83 REMARK 465 LYS B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 99 CG CE REMARK 470 LYS B 105 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 116 O HOH A 245 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 122 O HOH A 229 4456 2.11 REMARK 500 O HOH B 233 O HOH B 239 2774 2.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 4N6J A 86 131 UNP Q13033 STRN3_HUMAN 86 131 DBREF 4N6J B 86 131 UNP Q13033 STRN3_HUMAN 86 131 SEQADV 4N6J SER A 82 UNP Q13033 EXPRESSION TAG SEQADV 4N6J THR A 83 UNP Q13033 EXPRESSION TAG SEQADV 4N6J MSE A 84 UNP Q13033 EXPRESSION TAG SEQADV 4N6J ASP A 85 UNP Q13033 EXPRESSION TAG SEQADV 4N6J MSE A 99 UNP Q13033 PHE 99 ENGINEERED MUTATION SEQADV 4N6J MSE A 123 UNP Q13033 TYR 123 ENGINEERED MUTATION SEQADV 4N6J SER B 82 UNP Q13033 EXPRESSION TAG SEQADV 4N6J THR B 83 UNP Q13033 EXPRESSION TAG SEQADV 4N6J MSE B 84 UNP Q13033 EXPRESSION TAG SEQADV 4N6J ASP B 85 UNP Q13033 EXPRESSION TAG SEQADV 4N6J MSE B 99 UNP Q13033 PHE 99 ENGINEERED MUTATION SEQADV 4N6J MSE B 123 UNP Q13033 TYR 123 ENGINEERED MUTATION SEQRES 1 A 50 SER THR MSE ASP TRP GLU VAL GLU ARG ALA GLU LEU GLN SEQRES 2 A 50 ALA ARG ILE ALA MSE LEU GLN GLY GLU ARG LYS GLY GLN SEQRES 3 A 50 GLU ASN LEU LYS LYS ASP LEU VAL ARG ARG ILE LYS MSE SEQRES 4 A 50 LEU GLU MSE ALA LEU LYS GLN GLU ARG ALA LYS SEQRES 1 B 50 SER THR MSE ASP TRP GLU VAL GLU ARG ALA GLU LEU GLN SEQRES 2 B 50 ALA ARG ILE ALA MSE LEU GLN GLY GLU ARG LYS GLY GLN SEQRES 3 B 50 GLU ASN LEU LYS LYS ASP LEU VAL ARG ARG ILE LYS MSE SEQRES 4 B 50 LEU GLU MSE ALA LEU LYS GLN GLU ARG ALA LYS MODRES 4N6J MSE A 84 MET SELENOMETHIONINE MODRES 4N6J MSE A 99 MET SELENOMETHIONINE MODRES 4N6J MSE A 120 MET SELENOMETHIONINE MODRES 4N6J MSE A 123 MET SELENOMETHIONINE MODRES 4N6J MSE B 84 MET SELENOMETHIONINE MODRES 4N6J MSE B 99 MET SELENOMETHIONINE MODRES 4N6J MSE B 120 MET SELENOMETHIONINE MODRES 4N6J MSE B 123 MET SELENOMETHIONINE HET MSE A 84 8 HET MSE A 99 6 HET MSE A 120 8 HET MSE A 123 8 HET MSE B 84 8 HET MSE B 99 8 HET MSE B 120 8 HET MSE B 123 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *114(H2 O) HELIX 1 1 THR A 83 ALA A 130 1 48 HELIX 2 2 ASP B 85 GLU B 103 1 19 HELIX 3 3 GLU B 103 ALA B 130 1 28 LINK C THR A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N ASP A 85 1555 1555 1.33 LINK C ALA A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N LEU A 100 1555 1555 1.33 LINK C LYS A 119 N MSE A 120 1555 1555 1.34 LINK C MSE A 120 N LEU A 121 1555 1555 1.33 LINK C GLU A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ALA A 124 1555 1555 1.33 LINK C LYS B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N LEU B 121 1555 1555 1.33 LINK C MSE B 84 N ASP B 85 1555 1555 1.33 LINK C ALA B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N LEU B 100 1555 1555 1.34 LINK C GLU B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N ALA B 124 1555 1555 1.33 CRYST1 34.064 34.064 161.388 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029357 0.016949 0.000000 0.00000 SCALE2 0.000000 0.033898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006196 0.00000