HEADER LYASE 16-OCT-13 4N7Q TITLE CRYSTAL STRUCTURE OF EUKARYOTIC THIC FROM A. THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMETHYLPYRIMIDINE SYNTHASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DELTAN71-ATTHIC (UNP RESIDUES 72-644); COMPND 5 SYNONYM: HYDROXYMETHYLPYRIMIDINE PHOSPHATE SYNTHASE, HMP-P SYNTHASE, COMPND 6 HMP-PHOSPHATE SYNTHASE, HMPP SYNTHASE, PROTEIN PYRIMIDINE REQUIRING, COMPND 7 THIAMINE BIOSYNTHESIS PROTEIN THIC, PROTEIN THIAMINE C; COMPND 8 EC: 4.1.99.17; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: THIC, PY, AT2G29630, T27A16.27; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS (ALPHA/BETA)8 TIM BARREL FOLD, HMP-P SYNTHASE, SAM RADICAL DEPENDENT KEYWDS 2 ENZYME, METAL BINDING SITE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.COQUILLE,C.ROUX,A.MEHTA,T.P.BEGLEY,T.B.FITZPATRICK,S.THORE REVDAT 3 20-SEP-23 4N7Q 1 REMARK SEQADV LINK REVDAT 2 18-DEC-13 4N7Q 1 JRNL REVDAT 1 13-NOV-13 4N7Q 0 JRNL AUTH S.COQUILLE,C.ROUX,A.MEHTA,T.P.BEGLEY,T.B.FITZPATRICK,S.THORE JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE EUKARYOTIC HMP-P JRNL TITL 2 SYNTHASE (THIC) FROM ARABIDOPSIS THALIANA. JRNL REF J.STRUCT.BIOL. V. 184 438 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 24161603 JRNL DOI 10.1016/J.JSB.2013.10.005 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.790 REMARK 3 FREE R VALUE TEST SET COUNT : 6002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0409 - 4.9687 1.00 2518 220 0.1280 0.1457 REMARK 3 2 4.9687 - 3.9448 1.00 2430 204 0.1079 0.1238 REMARK 3 3 3.9448 - 3.4465 1.00 2404 209 0.1220 0.1310 REMARK 3 4 3.4465 - 3.1315 1.00 2398 204 0.1350 0.1616 REMARK 3 5 3.1315 - 2.9071 1.00 2387 201 0.1360 0.1649 REMARK 3 6 2.9071 - 2.7357 1.00 2400 198 0.1402 0.1708 REMARK 3 7 2.7357 - 2.5988 1.00 2364 201 0.1378 0.1630 REMARK 3 8 2.5988 - 2.4857 1.00 2370 201 0.1384 0.1569 REMARK 3 9 2.4857 - 2.3900 1.00 2384 196 0.1433 0.1832 REMARK 3 10 2.3900 - 2.3075 1.00 2371 197 0.1507 0.1646 REMARK 3 11 2.3075 - 2.2354 1.00 2372 199 0.1558 0.1973 REMARK 3 12 2.2354 - 2.1715 1.00 2376 199 0.1511 0.1864 REMARK 3 13 2.1715 - 2.1143 1.00 2355 197 0.1525 0.1533 REMARK 3 14 2.1143 - 2.0627 1.00 2338 199 0.1544 0.1785 REMARK 3 15 2.0627 - 2.0158 1.00 2366 197 0.1612 0.1765 REMARK 3 16 2.0158 - 1.9729 1.00 2373 200 0.1642 0.1880 REMARK 3 17 1.9729 - 1.9335 1.00 2361 199 0.1681 0.2223 REMARK 3 18 1.9335 - 1.8970 1.00 2354 200 0.1806 0.2083 REMARK 3 19 1.8970 - 1.8631 1.00 2356 198 0.1819 0.2209 REMARK 3 20 1.8631 - 1.8315 1.00 2353 199 0.1880 0.2000 REMARK 3 21 1.8315 - 1.8020 1.00 2330 196 0.1958 0.2481 REMARK 3 22 1.8020 - 1.7743 1.00 2370 200 0.1933 0.2168 REMARK 3 23 1.7743 - 1.7482 1.00 2342 196 0.1988 0.2083 REMARK 3 24 1.7482 - 1.7235 1.00 2361 201 0.1987 0.2373 REMARK 3 25 1.7235 - 1.7002 1.00 2331 196 0.2085 0.2606 REMARK 3 26 1.7002 - 1.6782 1.00 2355 201 0.2208 0.2552 REMARK 3 27 1.6782 - 1.6572 1.00 2356 198 0.2243 0.2411 REMARK 3 28 1.6572 - 1.6372 1.00 2335 198 0.2318 0.2825 REMARK 3 29 1.6372 - 1.6182 1.00 2344 200 0.2337 0.2647 REMARK 3 30 1.6182 - 1.6000 1.00 2332 198 0.2436 0.2578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3945 REMARK 3 ANGLE : 1.068 5355 REMARK 3 CHIRALITY : 0.078 570 REMARK 3 PLANARITY : 0.005 701 REMARK 3 DIHEDRAL : 13.547 1464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97795 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77101 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.95 REMARK 200 R MERGE FOR SHELL (I) : 1.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3EPM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT (II) CHLORIDE REMARK 280 HEXAHYDRATE, 0.1 M SODIUM ACETATE TRIHYDRATE, 1 M 1,6-HEXANEDIOL, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.43333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.43333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.86667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.86667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 919 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 71 REMARK 465 LYS A 72 REMARK 465 HIS A 73 REMARK 465 THR A 74 REMARK 465 ILE A 75 REMARK 465 ASP A 76 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 PRO A 80 REMARK 465 ASP A 81 REMARK 465 PHE A 82 REMARK 465 GLN A 83 REMARK 465 PRO A 84 REMARK 465 GLU A 557 REMARK 465 THR A 558 REMARK 465 LEU A 559 REMARK 465 PRO A 560 REMARK 465 ALA A 561 REMARK 465 ASP A 562 REMARK 465 GLY A 563 REMARK 465 ALA A 564 REMARK 465 LYS A 565 REMARK 465 VAL A 566 REMARK 465 ALA A 567 REMARK 465 HIS A 568 REMARK 465 PHE A 569 REMARK 465 CYS A 570 REMARK 465 SER A 571 REMARK 465 MET A 572 REMARK 465 CYS A 573 REMARK 465 GLY A 574 REMARK 465 PRO A 575 REMARK 465 LYS A 576 REMARK 465 PHE A 577 REMARK 465 CYS A 578 REMARK 465 SER A 579 REMARK 465 MET A 580 REMARK 465 LYS A 581 REMARK 465 ILE A 582 REMARK 465 THR A 583 REMARK 465 GLU A 584 REMARK 465 ASP A 585 REMARK 465 ILE A 586 REMARK 465 ARG A 587 REMARK 465 LYS A 588 REMARK 465 TYR A 589 REMARK 465 ALA A 590 REMARK 465 GLU A 591 REMARK 465 GLU A 592 REMARK 465 ASN A 593 REMARK 465 GLY A 594 REMARK 465 TYR A 595 REMARK 465 GLY A 596 REMARK 465 SER A 597 REMARK 465 ALA A 598 REMARK 465 GLU A 599 REMARK 465 GLU A 600 REMARK 465 ALA A 601 REMARK 465 ILE A 602 REMARK 465 ARG A 603 REMARK 465 GLN A 604 REMARK 465 GLY A 605 REMARK 465 MET A 606 REMARK 465 ASP A 607 REMARK 465 ALA A 608 REMARK 465 MET A 609 REMARK 465 SER A 610 REMARK 465 GLU A 611 REMARK 465 GLU A 612 REMARK 465 PHE A 613 REMARK 465 ASN A 614 REMARK 465 ILE A 615 REMARK 465 ALA A 616 REMARK 465 LYS A 617 REMARK 465 LYS A 618 REMARK 465 THR A 619 REMARK 465 ILE A 620 REMARK 465 SER A 621 REMARK 465 GLY A 622 REMARK 465 GLU A 623 REMARK 465 GLN A 624 REMARK 465 HIS A 625 REMARK 465 GLY A 626 REMARK 465 GLU A 627 REMARK 465 VAL A 628 REMARK 465 GLY A 629 REMARK 465 GLY A 630 REMARK 465 GLU A 631 REMARK 465 ILE A 632 REMARK 465 TYR A 633 REMARK 465 LEU A 634 REMARK 465 PRO A 635 REMARK 465 GLU A 636 REMARK 465 SER A 637 REMARK 465 TYR A 638 REMARK 465 VAL A 639 REMARK 465 LYS A 640 REMARK 465 ALA A 641 REMARK 465 ALA A 642 REMARK 465 GLN A 643 REMARK 465 LYS A 644 REMARK 465 LEU A 645 REMARK 465 GLU A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 HIS A 651 REMARK 465 HIS A 652 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1493 O HOH A 1494 1.84 REMARK 500 O HOH A 1494 O HOH A 1495 2.09 REMARK 500 O HOH A 1006 O HOH A 1361 2.09 REMARK 500 OD1 ASP A 188 O HOH A 1417 2.10 REMARK 500 O HOH A 1411 O HOH A 1412 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1495 O HOH A 1495 5555 2.01 REMARK 500 O HOH A 1236 O HOH A 1236 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 62.52 -159.57 REMARK 500 ASN A 359 120.86 -39.95 REMARK 500 ASP A 376 64.58 62.04 REMARK 500 HIS A 521 -0.72 75.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 704 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 426 NE2 REMARK 620 2 HIS A 490 NE2 99.3 REMARK 620 3 HOH A 805 O 169.4 89.6 REMARK 620 4 HOH A 806 O 87.9 94.8 85.8 REMARK 620 5 HOH A 807 O 98.3 90.2 87.2 171.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 704 DBREF 4N7Q A 72 644 UNP O82392 THIC_ARATH 72 644 SEQADV 4N7Q MET A 71 UNP O82392 INITIATING METHIONINE SEQADV 4N7Q LEU A 645 UNP O82392 EXPRESSION TAG SEQADV 4N7Q GLU A 646 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 647 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 648 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 649 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 650 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 651 UNP O82392 EXPRESSION TAG SEQADV 4N7Q HIS A 652 UNP O82392 EXPRESSION TAG SEQRES 1 A 582 MET LYS HIS THR ILE ASP PRO SER SER PRO ASP PHE GLN SEQRES 2 A 582 PRO ILE PRO SER PHE GLU GLU CYS PHE PRO LYS SER THR SEQRES 3 A 582 LYS GLU HIS LYS GLU VAL VAL HIS GLU GLU SER GLY HIS SEQRES 4 A 582 VAL LEU LYS VAL PRO PHE ARG ARG VAL HIS LEU SER GLY SEQRES 5 A 582 GLY GLU PRO ALA PHE ASP ASN TYR ASP THR SER GLY PRO SEQRES 6 A 582 GLN ASN VAL ASN ALA HIS ILE GLY LEU ALA LYS LEU ARG SEQRES 7 A 582 LYS GLU TRP ILE ASP ARG ARG GLU LYS LEU GLY THR PRO SEQRES 8 A 582 ARG TYR THR GLN MET TYR TYR ALA LYS GLN GLY ILE ILE SEQRES 9 A 582 THR GLU GLU MET LEU TYR CYS ALA THR ARG GLU LYS LEU SEQRES 10 A 582 ASP PRO GLU PHE VAL ARG SER GLU VAL ALA ARG GLY ARG SEQRES 11 A 582 ALA ILE ILE PRO SER ASN LYS LYS HIS LEU GLU LEU GLU SEQRES 12 A 582 PRO MET ILE VAL GLY ARG LYS PHE LEU VAL LYS VAL ASN SEQRES 13 A 582 ALA ASN ILE GLY ASN SER ALA VAL ALA SER SER ILE GLU SEQRES 14 A 582 GLU GLU VAL TYR LYS VAL GLN TRP ALA THR MET TRP GLY SEQRES 15 A 582 ALA ASP THR ILE MET ASP LEU SER THR GLY ARG HIS ILE SEQRES 16 A 582 HIS GLU THR ARG GLU TRP ILE LEU ARG ASN SER ALA VAL SEQRES 17 A 582 PRO VAL GLY THR VAL PRO ILE TYR GLN ALA LEU GLU LYS SEQRES 18 A 582 VAL ASP GLY ILE ALA GLU ASN LEU ASN TRP GLU VAL PHE SEQRES 19 A 582 ARG GLU THR LEU ILE GLU GLN ALA GLU GLN GLY VAL ASP SEQRES 20 A 582 TYR PHE THR ILE HIS ALA GLY VAL LEU LEU ARG TYR ILE SEQRES 21 A 582 PRO LEU THR ALA LYS ARG LEU THR GLY ILE VAL SER ARG SEQRES 22 A 582 GLY GLY SER ILE HIS ALA LYS TRP CYS LEU ALA TYR HIS SEQRES 23 A 582 LYS GLU ASN PHE ALA TYR GLU HIS TRP ASP ASP ILE LEU SEQRES 24 A 582 ASP ILE CYS ASN GLN TYR ASP VAL ALA LEU SER ILE GLY SEQRES 25 A 582 ASP GLY LEU ARG PRO GLY SER ILE TYR ASP ALA ASN ASP SEQRES 26 A 582 THR ALA GLN PHE ALA GLU LEU LEU THR GLN GLY GLU LEU SEQRES 27 A 582 THR ARG ARG ALA TRP GLU LYS ASP VAL GLN VAL MET ASN SEQRES 28 A 582 GLU GLY PRO GLY HIS VAL PRO MET HIS LYS ILE PRO GLU SEQRES 29 A 582 ASN MET GLN LYS GLN LEU GLU TRP CYS ASN GLU ALA PRO SEQRES 30 A 582 PHE TYR THR LEU GLY PRO LEU THR THR ASP ILE ALA PRO SEQRES 31 A 582 GLY TYR ASP HIS ILE THR SER ALA ILE GLY ALA ALA ASN SEQRES 32 A 582 ILE GLY ALA LEU GLY THR ALA LEU LEU CYS TYR VAL THR SEQRES 33 A 582 PRO LYS GLU HIS LEU GLY LEU PRO ASN ARG ASP ASP VAL SEQRES 34 A 582 LYS ALA GLY VAL ILE ALA TYR LYS ILE ALA ALA HIS ALA SEQRES 35 A 582 ALA ASP LEU ALA LYS GLN HIS PRO HIS ALA GLN ALA TRP SEQRES 36 A 582 ASP ASP ALA LEU SER LYS ALA ARG PHE GLU PHE ARG TRP SEQRES 37 A 582 MET ASP GLN PHE ALA LEU SER LEU ASP PRO MET THR ALA SEQRES 38 A 582 MET SER PHE HIS ASP GLU THR LEU PRO ALA ASP GLY ALA SEQRES 39 A 582 LYS VAL ALA HIS PHE CYS SER MET CYS GLY PRO LYS PHE SEQRES 40 A 582 CYS SER MET LYS ILE THR GLU ASP ILE ARG LYS TYR ALA SEQRES 41 A 582 GLU GLU ASN GLY TYR GLY SER ALA GLU GLU ALA ILE ARG SEQRES 42 A 582 GLN GLY MET ASP ALA MET SER GLU GLU PHE ASN ILE ALA SEQRES 43 A 582 LYS LYS THR ILE SER GLY GLU GLN HIS GLY GLU VAL GLY SEQRES 44 A 582 GLY GLU ILE TYR LEU PRO GLU SER TYR VAL LYS ALA ALA SEQRES 45 A 582 GLN LYS LEU GLU HIS HIS HIS HIS HIS HIS HET HEZ A 701 8 HET HEZ A 702 8 HET HEZ A 703 8 HET CO A 704 1 HETNAM HEZ HEXANE-1,6-DIOL HETNAM CO COBALT (II) ION FORMUL 2 HEZ 3(C6 H14 O2) FORMUL 5 CO CO 2+ FORMUL 6 HOH *695(H2 O) HELIX 1 1 SER A 87 PHE A 92 1 6 HELIX 2 2 ARG A 148 GLY A 159 1 12 HELIX 3 3 THR A 164 GLN A 171 1 8 HELIX 4 4 THR A 175 LYS A 186 1 12 HELIX 5 5 ASP A 188 ARG A 198 1 11 HELIX 6 6 SER A 237 TRP A 251 1 15 HELIX 7 7 HIS A 264 ASN A 275 1 12 HELIX 8 8 VAL A 283 VAL A 292 1 10 HELIX 9 9 ILE A 295 LEU A 299 5 5 HELIX 10 10 ASN A 300 GLY A 315 1 16 HELIX 11 11 LEU A 326 ALA A 334 5 9 HELIX 12 12 SER A 342 HIS A 356 1 15 HELIX 13 13 ASN A 359 HIS A 364 1 6 HELIX 14 14 HIS A 364 ASP A 376 1 13 HELIX 15 15 SER A 389 ALA A 393 5 5 HELIX 16 16 ASP A 395 LYS A 415 1 21 HELIX 17 17 PRO A 428 HIS A 430 5 3 HELIX 18 18 LYS A 431 CYS A 443 1 13 HELIX 19 19 TYR A 462 LEU A 477 1 16 HELIX 20 20 ASN A 495 LYS A 517 1 23 HELIX 21 21 ALA A 522 GLU A 535 1 14 HELIX 22 22 ARG A 537 SER A 545 1 9 HELIX 23 23 ASP A 547 ASP A 556 1 10 SHEET 1 A 3 SER A 95 VAL A 103 0 SHEET 2 A 3 VAL A 110 VAL A 118 -1 O VAL A 113 N LYS A 100 SHEET 3 A 3 PHE A 127 ASN A 129 -1 O ASN A 129 N ARG A 116 SHEET 1 B 2 ALA A 201 ILE A 202 0 SHEET 2 B 2 VAL A 217 GLY A 218 -1 O VAL A 217 N ILE A 202 SHEET 1 C 9 LYS A 224 ILE A 229 0 SHEET 2 C 9 THR A 255 ASP A 258 1 O MET A 257 N ILE A 229 SHEET 3 C 9 VAL A 280 THR A 282 1 O GLY A 281 N ILE A 256 SHEET 4 C 9 TYR A 318 ILE A 321 1 O THR A 320 N THR A 282 SHEET 5 C 9 ALA A 378 ILE A 381 1 O SER A 380 N PHE A 319 SHEET 6 C 9 VAL A 419 GLY A 423 1 O GLU A 422 N ILE A 381 SHEET 7 C 9 PHE A 448 LEU A 451 1 O TYR A 449 N GLY A 423 SHEET 8 C 9 LEU A 481 CYS A 483 1 O CYS A 483 N THR A 450 SHEET 9 C 9 LYS A 224 ILE A 229 1 N ASN A 226 O LEU A 482 LINK NE2 HIS A 426 CO CO A 704 1555 1555 2.19 LINK NE2 HIS A 490 CO CO A 704 1555 1555 2.20 LINK CO CO A 704 O HOH A 805 1555 1555 2.24 LINK CO CO A 704 O HOH A 806 1555 1555 2.11 LINK CO CO A 704 O HOH A 807 1555 1555 2.13 CISPEP 1 PRO A 424 GLY A 425 0 10.59 CISPEP 2 GLY A 452 PRO A 453 0 10.77 SITE 1 AC1 2 GLU A 306 HOH A1350 SITE 1 AC2 6 LYS A 335 ARG A 336 TYR A 391 ASP A 527 SITE 2 AC2 6 HOH A1060 HOH A1292 SITE 1 AC3 7 PHE A 115 ASP A 128 TYR A 130 ARG A 184 SITE 2 AC3 7 HOH A 826 HOH A1027 HOH A1476 SITE 1 AC4 6 HIS A 426 HIS A 490 HOH A 805 HOH A 806 SITE 2 AC4 6 HOH A 807 HOH A1491 CRYST1 107.000 107.000 88.300 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009346 0.005396 0.000000 0.00000 SCALE2 0.000000 0.010792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011325 0.00000