HEADER CHAPERONE 17-OCT-13 4N8M TITLE STRUCTURAL POLYMORPHISM IN THE N-TERMINAL OLIGOMERIZATION DOMAIN OF TITLE 2 NPM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPHOSMIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF NPM1, UNP RESIDUES 1-130; COMPND 5 SYNONYM: NPM, NUCLEOLAR PHOSPHOPROTEIN B23, NUCLEOLAR PROTEIN NO38, COMPND 6 NUMATRIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NPM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS HISTONE CHAPERONE, NUCLEOLAR PROTEIN, PHOSPHOPROTEIN, STRUCTURAL KEYWDS 2 POLYMORPHISM, PENTAMER, RIBOSOME BIOGENESIS, REGULATED UNFOLDING, KEYWDS 3 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR D.MITREA,G.ROYAPPA,M.BULJAN,M.YUN,N.PYTEL,J.SATUMBA,A.NOURSE,C.PARK, AUTHOR 2 M.M.BABU,S.W.WHITE,R.W.KRIWACKI REVDAT 4 20-SEP-23 4N8M 1 REMARK LINK REVDAT 3 20-NOV-19 4N8M 1 SEQADV LINK REVDAT 2 23-APR-14 4N8M 1 JRNL REVDAT 1 12-MAR-14 4N8M 0 JRNL AUTH D.M.MITREA,C.R.GRACE,M.BULJAN,M.K.YUN,N.J.PYTEL,J.SATUMBA, JRNL AUTH 2 A.NOURSE,C.G.PARK,M.MADAN BABU,S.W.WHITE,R.W.KRIWACKI JRNL TITL STRUCTURAL POLYMORPHISM IN THE N-TERMINAL OLIGOMERIZATION JRNL TITL 2 DOMAIN OF NPM1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 4466 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24616519 JRNL DOI 10.1073/PNAS.1321007111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 49014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2680 - 4.7185 0.98 2665 149 0.1836 0.1929 REMARK 3 2 4.7185 - 3.7463 0.98 2649 148 0.1365 0.1551 REMARK 3 3 3.7463 - 3.2731 0.99 2627 157 0.1552 0.1619 REMARK 3 4 3.2731 - 2.9740 0.99 2666 119 0.1547 0.1782 REMARK 3 5 2.9740 - 2.7609 0.99 2637 146 0.1640 0.2019 REMARK 3 6 2.7609 - 2.5981 1.00 2626 144 0.1699 0.1968 REMARK 3 7 2.5981 - 2.4681 1.00 2670 150 0.1699 0.2055 REMARK 3 8 2.4681 - 2.3606 1.00 2677 138 0.1695 0.2136 REMARK 3 9 2.3606 - 2.2698 1.00 2620 147 0.1573 0.1816 REMARK 3 10 2.2698 - 2.1915 1.00 2652 136 0.1569 0.1966 REMARK 3 11 2.1915 - 2.1229 1.00 2653 138 0.1582 0.1893 REMARK 3 12 2.1229 - 2.0623 1.00 2675 125 0.1493 0.1959 REMARK 3 13 2.0623 - 2.0080 1.00 2652 125 0.1511 0.1686 REMARK 3 14 2.0080 - 1.9590 0.99 2618 138 0.1507 0.2083 REMARK 3 15 1.9590 - 1.9145 0.98 2566 160 0.1780 0.2196 REMARK 3 16 1.9145 - 1.8737 0.93 2496 136 0.1999 0.2617 REMARK 3 17 1.8737 - 1.8362 0.87 2251 133 0.2325 0.2956 REMARK 3 18 1.8362 - 1.8020 0.80 2121 104 0.2496 0.3416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 41.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.45100 REMARK 3 B22 (A**2) : -4.86040 REMARK 3 B33 (A**2) : -0.59060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57860 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4118 REMARK 3 ANGLE : 1.260 5592 REMARK 3 CHIRALITY : 0.091 649 REMARK 3 PLANARITY : 0.006 723 REMARK 3 DIHEDRAL : 12.612 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -36.9754 -3.7397 -22.1218 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1366 REMARK 3 T33: 0.1659 T12: -0.0006 REMARK 3 T13: 0.0272 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.1741 L22: 0.4032 REMARK 3 L33: 0.7640 L12: -0.1968 REMARK 3 L13: -0.0501 L23: 0.2628 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1481 S13: 0.0756 REMARK 3 S21: 0.1086 S22: -0.0947 S23: 0.2997 REMARK 3 S31: 0.0734 S32: -0.1509 S33: 0.0291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -25.2826 -5.8264 -38.0974 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.1052 REMARK 3 T33: 0.0938 T12: -0.0015 REMARK 3 T13: -0.0060 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8967 L22: 0.6948 REMARK 3 L33: 0.7481 L12: -0.0451 REMARK 3 L13: 0.1829 L23: -0.1007 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.1572 S13: 0.0410 REMARK 3 S21: -0.1374 S22: -0.0039 S23: 0.0088 REMARK 3 S31: 0.0545 S32: -0.0192 S33: -0.0127 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -6.7208 -6.2228 -32.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1291 REMARK 3 T33: 0.1553 T12: 0.0222 REMARK 3 T13: -0.0005 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.7304 L22: 0.5192 REMARK 3 L33: 0.9115 L12: 0.0687 REMARK 3 L13: 0.1318 L23: -0.1031 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.1336 S13: -0.0909 REMARK 3 S21: 0.0169 S22: -0.0239 S23: -0.1731 REMARK 3 S31: 0.0142 S32: 0.1903 S33: 0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -6.5325 -4.4062 -12.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1664 REMARK 3 T33: 0.1364 T12: 0.0442 REMARK 3 T13: -0.0407 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.3164 L22: 0.2917 REMARK 3 L33: 0.7843 L12: 0.0299 REMARK 3 L13: 0.0146 L23: 0.4155 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.2205 S13: -0.0631 REMARK 3 S21: 0.2708 S22: 0.0188 S23: -0.1283 REMARK 3 S31: 0.1270 S32: 0.1116 S33: -0.0117 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -25.4288 -3.2219 -6.1772 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.2634 REMARK 3 T33: 0.0553 T12: -0.0231 REMARK 3 T13: 0.0595 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.9212 L22: 0.5251 REMARK 3 L33: 0.3547 L12: 0.2503 REMARK 3 L13: 0.1198 L23: 0.1345 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: -0.5928 S13: 0.1422 REMARK 3 S21: 0.3907 S22: -0.1323 S23: 0.1318 REMARK 3 S31: 0.2633 S32: -0.1551 S33: -0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2P1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M 1,6 HEXANDIOL, 10MM COBALT REMARK 280 CHLORIDE, 0.1M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.33750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.89700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.33750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.89700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 ASP A 6 REMARK 465 MET A 7 REMARK 465 ASP A 8 REMARK 465 MET A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 121 REMARK 465 ASP A 122 REMARK 465 ALA A 123 REMARK 465 GLU A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 ASP A 127 REMARK 465 GLU A 128 REMARK 465 ASP A 129 REMARK 465 GLU A 130 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 MET B 5 REMARK 465 ASP B 6 REMARK 465 MET B 7 REMARK 465 ASP B 8 REMARK 465 MET B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 LEU B 12 REMARK 465 GLU B 120 REMARK 465 GLU B 121 REMARK 465 ASP B 122 REMARK 465 ALA B 123 REMARK 465 GLU B 124 REMARK 465 SER B 125 REMARK 465 GLU B 126 REMARK 465 ASP B 127 REMARK 465 GLU B 128 REMARK 465 ASP B 129 REMARK 465 GLU B 130 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 465 MET C 5 REMARK 465 ASP C 6 REMARK 465 MET C 7 REMARK 465 ASP C 8 REMARK 465 MET C 9 REMARK 465 SER C 10 REMARK 465 PRO C 11 REMARK 465 LEU C 12 REMARK 465 ARG C 13 REMARK 465 GLU C 120 REMARK 465 GLU C 121 REMARK 465 ASP C 122 REMARK 465 ALA C 123 REMARK 465 GLU C 124 REMARK 465 SER C 125 REMARK 465 GLU C 126 REMARK 465 ASP C 127 REMARK 465 GLU C 128 REMARK 465 ASP C 129 REMARK 465 GLU C 130 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 ASP D 3 REMARK 465 SER D 4 REMARK 465 MET D 5 REMARK 465 ASP D 6 REMARK 465 MET D 7 REMARK 465 ASP D 8 REMARK 465 MET D 9 REMARK 465 SER D 10 REMARK 465 PRO D 11 REMARK 465 LEU D 12 REMARK 465 ARG D 13 REMARK 465 VAL D 119 REMARK 465 GLU D 120 REMARK 465 GLU D 121 REMARK 465 ASP D 122 REMARK 465 ALA D 123 REMARK 465 GLU D 124 REMARK 465 SER D 125 REMARK 465 GLU D 126 REMARK 465 ASP D 127 REMARK 465 GLU D 128 REMARK 465 ASP D 129 REMARK 465 GLU D 130 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 ASP E 3 REMARK 465 SER E 4 REMARK 465 MET E 5 REMARK 465 ASP E 6 REMARK 465 MET E 7 REMARK 465 ASP E 8 REMARK 465 MET E 9 REMARK 465 SER E 10 REMARK 465 PRO E 11 REMARK 465 LEU E 12 REMARK 465 ARG E 13 REMARK 465 GLU E 120 REMARK 465 GLU E 121 REMARK 465 ASP E 122 REMARK 465 ALA E 123 REMARK 465 GLU E 124 REMARK 465 SER E 125 REMARK 465 GLU E 126 REMARK 465 ASP E 127 REMARK 465 GLU E 128 REMARK 465 ASP E 129 REMARK 465 GLU E 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 119 CG1 CG2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 VAL B 119 CG1 CG2 REMARK 470 ASP C 34 CG OD1 OD2 REMARK 470 ASN C 35 CG OD1 ND2 REMARK 470 VAL C 119 CG1 CG2 REMARK 470 ASP D 34 CG OD1 OD2 REMARK 470 ASN D 35 CG OD1 ND2 REMARK 470 ASP D 36 CG OD1 OD2 REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 ASP E 26 CG OD1 OD2 REMARK 470 VAL E 119 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 104 CB CYS C 104 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -147.40 -101.12 REMARK 500 VAL A 83 -52.25 -125.77 REMARK 500 GLN A 84 87.40 -152.95 REMARK 500 ASP B 28 -168.49 -100.90 REMARK 500 VAL B 83 -50.77 -125.92 REMARK 500 GLN B 84 87.64 -153.08 REMARK 500 ASN C 35 -56.27 -131.98 REMARK 500 ARG C 45 -72.20 -106.73 REMARK 500 GLN C 84 85.16 -159.94 REMARK 500 ASP D 36 -172.03 179.87 REMARK 500 GLU D 37 30.93 -87.16 REMARK 500 ARG D 45 -75.72 -110.92 REMARK 500 LYS D 54 -112.75 -93.45 REMARK 500 VAL D 83 -51.87 -122.57 REMARK 500 GLN D 84 89.22 -156.59 REMARK 500 ARG E 45 -60.54 -109.99 REMARK 500 GLN E 84 88.30 -159.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 601 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 OD1 REMARK 620 2 ASP A 28 OD2 49.8 REMARK 620 3 HIS A 30 NE2 89.9 97.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 28 OD2 REMARK 620 2 HIS B 30 NE2 104.3 REMARK 620 3 HOH B 355 O 151.7 91.6 REMARK 620 4 HOH B 357 O 116.4 93.3 85.2 REMARK 620 5 HOH B 358 O 78.1 92.1 78.2 162.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO C 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 28 OD2 REMARK 620 2 HIS C 30 NE2 95.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO D 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 28 OD2 REMARK 620 2 HIS D 30 NE2 101.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO E 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 28 OD2 REMARK 620 2 HIS E 30 NE2 104.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO E 201 DBREF 4N8M A 1 130 UNP Q61937 NPM_MOUSE 1 130 DBREF 4N8M B 1 130 UNP Q61937 NPM_MOUSE 1 130 DBREF 4N8M C 1 130 UNP Q61937 NPM_MOUSE 1 130 DBREF 4N8M D 1 130 UNP Q61937 NPM_MOUSE 1 130 DBREF 4N8M E 1 130 UNP Q61937 NPM_MOUSE 1 130 SEQADV 4N8M GLY A -2 UNP Q61937 EXPRESSION TAG SEQADV 4N8M SER A -1 UNP Q61937 EXPRESSION TAG SEQADV 4N8M HIS A 0 UNP Q61937 EXPRESSION TAG SEQADV 4N8M GLY B -2 UNP Q61937 EXPRESSION TAG SEQADV 4N8M SER B -1 UNP Q61937 EXPRESSION TAG SEQADV 4N8M HIS B 0 UNP Q61937 EXPRESSION TAG SEQADV 4N8M GLY C -2 UNP Q61937 EXPRESSION TAG SEQADV 4N8M SER C -1 UNP Q61937 EXPRESSION TAG SEQADV 4N8M HIS C 0 UNP Q61937 EXPRESSION TAG SEQADV 4N8M GLY D -2 UNP Q61937 EXPRESSION TAG SEQADV 4N8M SER D -1 UNP Q61937 EXPRESSION TAG SEQADV 4N8M HIS D 0 UNP Q61937 EXPRESSION TAG SEQADV 4N8M GLY E -2 UNP Q61937 EXPRESSION TAG SEQADV 4N8M SER E -1 UNP Q61937 EXPRESSION TAG SEQADV 4N8M HIS E 0 UNP Q61937 EXPRESSION TAG SEQRES 1 A 133 GLY SER HIS MET GLU ASP SER MET ASP MET ASP MET SER SEQRES 2 A 133 PRO LEU ARG PRO GLN ASN TYR LEU PHE GLY CYS GLU LEU SEQRES 3 A 133 LYS ALA ASP LYS ASP TYR HIS PHE LYS VAL ASP ASN ASP SEQRES 4 A 133 GLU ASN GLU HIS GLN LEU SER LEU ARG THR VAL SER LEU SEQRES 5 A 133 GLY ALA GLY ALA LYS ASP GLU LEU HIS ILE VAL GLU ALA SEQRES 6 A 133 GLU ALA MET ASN TYR GLU GLY SER PRO ILE LYS VAL THR SEQRES 7 A 133 LEU ALA THR LEU LYS MET SER VAL GLN PRO THR VAL SER SEQRES 8 A 133 LEU GLY GLY PHE GLU ILE THR PRO PRO VAL VAL LEU ARG SEQRES 9 A 133 LEU LYS CYS GLY SER GLY PRO VAL HIS ILE SER GLY GLN SEQRES 10 A 133 HIS LEU VAL ALA VAL GLU GLU ASP ALA GLU SER GLU ASP SEQRES 11 A 133 GLU ASP GLU SEQRES 1 B 133 GLY SER HIS MET GLU ASP SER MET ASP MET ASP MET SER SEQRES 2 B 133 PRO LEU ARG PRO GLN ASN TYR LEU PHE GLY CYS GLU LEU SEQRES 3 B 133 LYS ALA ASP LYS ASP TYR HIS PHE LYS VAL ASP ASN ASP SEQRES 4 B 133 GLU ASN GLU HIS GLN LEU SER LEU ARG THR VAL SER LEU SEQRES 5 B 133 GLY ALA GLY ALA LYS ASP GLU LEU HIS ILE VAL GLU ALA SEQRES 6 B 133 GLU ALA MET ASN TYR GLU GLY SER PRO ILE LYS VAL THR SEQRES 7 B 133 LEU ALA THR LEU LYS MET SER VAL GLN PRO THR VAL SER SEQRES 8 B 133 LEU GLY GLY PHE GLU ILE THR PRO PRO VAL VAL LEU ARG SEQRES 9 B 133 LEU LYS CYS GLY SER GLY PRO VAL HIS ILE SER GLY GLN SEQRES 10 B 133 HIS LEU VAL ALA VAL GLU GLU ASP ALA GLU SER GLU ASP SEQRES 11 B 133 GLU ASP GLU SEQRES 1 C 133 GLY SER HIS MET GLU ASP SER MET ASP MET ASP MET SER SEQRES 2 C 133 PRO LEU ARG PRO GLN ASN TYR LEU PHE GLY CYS GLU LEU SEQRES 3 C 133 LYS ALA ASP LYS ASP TYR HIS PHE LYS VAL ASP ASN ASP SEQRES 4 C 133 GLU ASN GLU HIS GLN LEU SER LEU ARG THR VAL SER LEU SEQRES 5 C 133 GLY ALA GLY ALA LYS ASP GLU LEU HIS ILE VAL GLU ALA SEQRES 6 C 133 GLU ALA MET ASN TYR GLU GLY SER PRO ILE LYS VAL THR SEQRES 7 C 133 LEU ALA THR LEU LYS MET SER VAL GLN PRO THR VAL SER SEQRES 8 C 133 LEU GLY GLY PHE GLU ILE THR PRO PRO VAL VAL LEU ARG SEQRES 9 C 133 LEU LYS CYS GLY SER GLY PRO VAL HIS ILE SER GLY GLN SEQRES 10 C 133 HIS LEU VAL ALA VAL GLU GLU ASP ALA GLU SER GLU ASP SEQRES 11 C 133 GLU ASP GLU SEQRES 1 D 133 GLY SER HIS MET GLU ASP SER MET ASP MET ASP MET SER SEQRES 2 D 133 PRO LEU ARG PRO GLN ASN TYR LEU PHE GLY CYS GLU LEU SEQRES 3 D 133 LYS ALA ASP LYS ASP TYR HIS PHE LYS VAL ASP ASN ASP SEQRES 4 D 133 GLU ASN GLU HIS GLN LEU SER LEU ARG THR VAL SER LEU SEQRES 5 D 133 GLY ALA GLY ALA LYS ASP GLU LEU HIS ILE VAL GLU ALA SEQRES 6 D 133 GLU ALA MET ASN TYR GLU GLY SER PRO ILE LYS VAL THR SEQRES 7 D 133 LEU ALA THR LEU LYS MET SER VAL GLN PRO THR VAL SER SEQRES 8 D 133 LEU GLY GLY PHE GLU ILE THR PRO PRO VAL VAL LEU ARG SEQRES 9 D 133 LEU LYS CYS GLY SER GLY PRO VAL HIS ILE SER GLY GLN SEQRES 10 D 133 HIS LEU VAL ALA VAL GLU GLU ASP ALA GLU SER GLU ASP SEQRES 11 D 133 GLU ASP GLU SEQRES 1 E 133 GLY SER HIS MET GLU ASP SER MET ASP MET ASP MET SER SEQRES 2 E 133 PRO LEU ARG PRO GLN ASN TYR LEU PHE GLY CYS GLU LEU SEQRES 3 E 133 LYS ALA ASP LYS ASP TYR HIS PHE LYS VAL ASP ASN ASP SEQRES 4 E 133 GLU ASN GLU HIS GLN LEU SER LEU ARG THR VAL SER LEU SEQRES 5 E 133 GLY ALA GLY ALA LYS ASP GLU LEU HIS ILE VAL GLU ALA SEQRES 6 E 133 GLU ALA MET ASN TYR GLU GLY SER PRO ILE LYS VAL THR SEQRES 7 E 133 LEU ALA THR LEU LYS MET SER VAL GLN PRO THR VAL SER SEQRES 8 E 133 LEU GLY GLY PHE GLU ILE THR PRO PRO VAL VAL LEU ARG SEQRES 9 E 133 LEU LYS CYS GLY SER GLY PRO VAL HIS ILE SER GLY GLN SEQRES 10 E 133 HIS LEU VAL ALA VAL GLU GLU ASP ALA GLU SER GLU ASP SEQRES 11 E 133 GLU ASP GLU HET CO A 601 1 HET CO B 201 1 HET CO C 201 1 HET CO D 201 1 HET CO E 201 1 HETNAM CO COBALT (II) ION FORMUL 6 CO 5(CO 2+) FORMUL 11 HOH *227(H2 O) HELIX 1 1 ASP A 36 ASN A 38 5 3 HELIX 2 2 ASP C 36 ASN C 38 5 3 SHEET 1 A 4 GLN A 15 LEU A 23 0 SHEET 2 A 4 VAL A 109 VAL A 117 -1 O VAL A 109 N LEU A 23 SHEET 3 A 4 HIS A 40 LEU A 49 -1 N SER A 48 O HIS A 110 SHEET 4 A 4 THR A 86 ILE A 94 -1 O LEU A 89 N ARG A 45 SHEET 1 B 4 TYR A 29 PHE A 31 0 SHEET 2 B 4 VAL A 98 CYS A 104 -1 O VAL A 98 N PHE A 31 SHEET 3 B 4 HIS A 58 MET A 65 -1 N GLU A 61 O ARG A 101 SHEET 4 B 4 PRO A 71 LEU A 79 -1 O LEU A 79 N HIS A 58 SHEET 1 C 4 GLN B 15 LEU B 23 0 SHEET 2 C 4 VAL B 109 ALA B 118 -1 O VAL B 109 N LEU B 23 SHEET 3 C 4 GLU B 39 LEU B 49 -1 N SER B 48 O HIS B 110 SHEET 4 C 4 THR B 86 ILE B 94 -1 O LEU B 89 N ARG B 45 SHEET 1 D 4 TYR B 29 PHE B 31 0 SHEET 2 D 4 VAL B 98 CYS B 104 -1 O VAL B 98 N PHE B 31 SHEET 3 D 4 HIS B 58 MET B 65 -1 N GLU B 61 O ARG B 101 SHEET 4 D 4 PRO B 71 LEU B 79 -1 O LEU B 79 N HIS B 58 SHEET 1 E 4 GLN C 15 LEU C 23 0 SHEET 2 E 4 VAL C 109 VAL C 117 -1 O VAL C 109 N LEU C 23 SHEET 3 E 4 HIS C 40 LEU C 49 -1 N SER C 48 O HIS C 110 SHEET 4 E 4 THR C 86 ILE C 94 -1 O LEU C 89 N ARG C 45 SHEET 1 F 4 TYR C 29 PHE C 31 0 SHEET 2 F 4 VAL C 98 CYS C 104 -1 O VAL C 98 N PHE C 31 SHEET 3 F 4 HIS C 58 MET C 65 -1 N GLU C 61 O ARG C 101 SHEET 4 F 4 PRO C 71 LEU C 79 -1 O ILE C 72 N ALA C 64 SHEET 1 G 4 GLN D 15 LEU D 23 0 SHEET 2 G 4 VAL D 109 ALA D 118 -1 O HIS D 115 N TYR D 17 SHEET 3 G 4 GLU D 39 LEU D 49 -1 N SER D 48 O HIS D 110 SHEET 4 G 4 THR D 86 ILE D 94 -1 O LEU D 89 N ARG D 45 SHEET 1 H 4 TYR D 29 PHE D 31 0 SHEET 2 H 4 VAL D 98 CYS D 104 -1 O VAL D 98 N PHE D 31 SHEET 3 H 4 HIS D 58 MET D 65 -1 N GLU D 61 O ARG D 101 SHEET 4 H 4 PRO D 71 LEU D 79 -1 O VAL D 74 N ALA D 62 SHEET 1 I 4 GLN E 15 LEU E 23 0 SHEET 2 I 4 VAL E 109 ALA E 118 -1 O HIS E 115 N TYR E 17 SHEET 3 I 4 GLU E 39 LEU E 49 -1 N SER E 48 O HIS E 110 SHEET 4 I 4 THR E 86 ILE E 94 -1 O LEU E 89 N ARG E 45 SHEET 1 J 4 TYR E 29 PHE E 31 0 SHEET 2 J 4 VAL E 98 CYS E 104 -1 O VAL E 98 N PHE E 31 SHEET 3 J 4 HIS E 58 MET E 65 -1 N GLU E 61 O ARG E 101 SHEET 4 J 4 PRO E 71 LEU E 79 -1 O VAL E 74 N ALA E 62 LINK OD1 ASP A 28 CO CO A 601 1555 1555 2.77 LINK OD2 ASP A 28 CO CO A 601 1555 1555 2.39 LINK NE2 HIS A 30 CO CO A 601 1555 1555 2.28 LINK OD2 ASP B 28 CO CO B 201 1555 1555 2.07 LINK NE2 HIS B 30 CO CO B 201 1555 1555 2.18 LINK CO CO B 201 O HOH B 355 1555 1555 2.46 LINK CO CO B 201 O HOH B 357 1555 1555 2.08 LINK CO CO B 201 O HOH B 358 1555 1555 2.41 LINK OD2 ASP C 28 CO CO C 201 1555 1555 2.28 LINK NE2 HIS C 30 CO CO C 201 1555 1555 2.17 LINK OD2 ASP D 28 CO CO D 201 1555 1555 2.22 LINK NE2 HIS D 30 CO CO D 201 1555 1555 2.21 LINK OD2 ASP E 28 CO CO E 201 1555 1555 2.37 LINK NE2 HIS E 30 CO CO E 201 1555 1555 2.40 CISPEP 1 PRO A 96 PRO A 97 0 2.26 CISPEP 2 GLY A 107 PRO A 108 0 3.41 CISPEP 3 PRO B 96 PRO B 97 0 2.95 CISPEP 4 GLY B 107 PRO B 108 0 3.95 CISPEP 5 PRO C 96 PRO C 97 0 2.73 CISPEP 6 GLY C 107 PRO C 108 0 7.82 CISPEP 7 PRO D 96 PRO D 97 0 3.64 CISPEP 8 GLY D 107 PRO D 108 0 5.85 CISPEP 9 PRO E 96 PRO E 97 0 1.38 CISPEP 10 GLY E 107 PRO E 108 0 1.07 SITE 1 AC1 2 ASP A 28 HIS A 30 SITE 1 AC2 5 ASP B 28 HIS B 30 HOH B 355 HOH B 357 SITE 2 AC2 5 HOH B 358 SITE 1 AC3 2 ASP C 28 HIS C 30 SITE 1 AC4 2 ASP D 28 HIS D 30 SITE 1 AC5 2 ASP E 28 HIS E 30 CRYST1 90.675 69.794 88.630 90.00 99.87 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011028 0.000000 0.001919 0.00000 SCALE2 0.000000 0.014328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011452 0.00000