HEADER OXIDOREDUCTASE 21-OCT-13 4N9M TITLE JOINT NEUTRON/X-RAY STRUCTURE OF URATE OXIDASE IN COMPLEX WITH 8- TITLE 2 HYDROXYXANTHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 GENE: UAZ, UOX; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS URATE OXIDASE, URICASE OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA NEUTRON DIFFRACTION; X-RAY DIFFRACTION AUTHOR E.OKSANEN,M.P.BLAKELEY,M.BUDAYOVA-SPANO REVDAT 3 13-JUN-18 4N9M 1 JRNL REMARK REVDAT 2 26-FEB-14 4N9M 1 JRNL REVDAT 1 05-FEB-14 4N9M 0 JRNL AUTH E.OKSANEN,M.P.BLAKELEY,M.EL-HAJJI,U.RYDE,M.BUDAYOVA-SPANO JRNL TITL THE NEUTRON STRUCTURE OF URATE OXIDASE RESOLVES A JRNL TITL 2 LONG-STANDING MECHANISTIC CONUNDRUM AND REVEALS UNEXPECTED JRNL TITL 3 CHANGES IN PROTONATION. JRNL REF PLOS ONE V. 9 86651 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24466188 JRNL DOI 10.1371/JOURNAL.PONE.0086651 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.OKSANEN,M.P.BLAKELEY,F.BONNETE,M.T.DAUVERGNE,F.DAUVERGNE, REMARK 1 AUTH 2 M.BUDAYOVA-SPANO REMARK 1 TITL LARGE CRYSTAL GROWTH BY THERMAL CONTROL ALLOWS COMBINED REMARK 1 TITL 2 X-RAY AND NEUTRON CRYSTALLOGRAPHIC STUDIES TO ELUCIDATE THE REMARK 1 TITL 3 PROTONATION STATES IN ASPERGILLUS FLAVUS URATE OXIDASE. REMARK 1 REF J R SOC INTERFACE V.PL 5 S599 2009 REMARK 1 REFN ISSN 1742-5662 REMARK 1 PMID 19586953 REMARK 1 DOI 10.1098/RSIF.2009.0162.FOCUS REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 26344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2097 - 4.1951 0.98 2943 154 0.1345 0.1314 REMARK 3 2 4.1951 - 3.3355 1.00 2864 151 0.1429 0.1646 REMARK 3 3 3.3355 - 2.9155 1.00 2833 150 0.1736 0.1980 REMARK 3 4 2.9155 - 2.6497 1.00 2842 149 0.1861 0.2107 REMARK 3 5 2.6497 - 2.4602 1.00 2831 149 0.1850 0.2110 REMARK 3 6 2.4602 - 2.3154 1.00 2821 148 0.1896 0.2432 REMARK 3 7 2.3154 - 2.1996 1.00 2807 149 0.1905 0.2268 REMARK 3 8 2.1996 - 2.1040 1.00 2775 145 0.1960 0.1983 REMARK 3 9 2.1040 - 2.0231 0.81 2311 122 0.2286 0.3058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 25.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.74230 REMARK 3 B22 (A**2) : 5.50130 REMARK 3 B33 (A**2) : 1.36150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.075 5246 REMARK 3 ANGLE : 2.409 8830 REMARK 3 CHIRALITY : 0.048 374 REMARK 3 PLANARITY : 0.002 738 REMARK 3 DIHEDRAL : 16.275 1337 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.1 REMARK 3 NUMBER OF REFLECTIONS : 13174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0732 - 3.9288 0.93 3419 179 0.2178 0.2095 REMARK 3 2 3.9288 - 3.1188 0.85 2983 165 0.2325 0.2901 REMARK 3 3 3.1188 - 2.7247 0.68 2370 130 0.2905 0.3665 REMARK 3 4 2.7247 - 2.4756 0.57 1985 98 0.3269 0.3170 REMARK 3 5 2.4756 - 2.3000 0.51 1754 91 0.3622 0.4472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.60 REMARK 3 B_SOL : 20.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.55840 REMARK 3 B22 (A**2) : 7.90630 REMARK 3 B33 (A**2) : 6.46840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MULTILAYER MIRROR REMARK 200 OPTICS : XENOCS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : LAUEGEN REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 30-AUG-08 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 8.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : NULL REMARK 230 WAVELENGTH OR RANGE (A) : 3.25-4.15 REMARK 230 MONOCHROMATOR : NI/TI MULTILAYER FILTER REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : LAUEGEN REMARK 230 DATA SCALING SOFTWARE : SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 13179 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 230 RESOLUTION RANGE LOW (A) : 40.060 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 72.2 REMARK 230 DATA REDUNDANCY : NULL REMARK 230 R MERGE (I) : 0.13300 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 7.9000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 230 COMPLETENESS FOR SHELL (%) : 50.6 REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : 0.19000 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 2.200 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 230 SOFTWARE USED : MOLREP REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % PEG 8000, 0.1 M NACL, 0.1 M REMARK 280 TRISHCL PD 8.5, 8 MG/ML URATE OXIDASE, TEMPERATURE-CONTROLLED REMARK 280 BATCH, TEMPERATURE 291K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.75500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.75500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.09000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.13000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.75500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.09000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.13000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 105.51000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 105.51000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 296 REMARK 465 LEU A 297 REMARK 465 LYS A 298 REMARK 465 SER A 299 REMARK 465 LYS A 300 REMARK 465 LEU A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASN A 92 CG OD1 ND2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 138 CD CE NZ REMARK 470 LYS A 143 CE NZ REMARK 470 LYS A 171 CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 DG1 THR A 67 D1 DOD A 616 1.04 REMARK 500 D1 DOD A 547 D2 DOD A 633 1.22 REMARK 500 O DOD A 545 D2 DOD A 635 1.33 REMARK 500 O DOD A 531 D2 DOD A 539 1.37 REMARK 500 DG SER A 59 D1 DOD A 507 1.39 REMARK 500 O LYS A 127 D1 DOD A 516 1.47 REMARK 500 O LYS A 69 D1 DOD A 666 1.51 REMARK 500 OE2 GLU A 126 D2 DOD A 516 1.51 REMARK 500 O DOD A 539 D1 DOD A 642 1.54 REMARK 500 D1 DOD A 511 O DOD A 674 1.56 REMARK 500 DAA 8HX A 401 O DOD A 687 1.56 REMARK 500 OE1 GLU A 249 D2 DOD A 636 1.57 REMARK 500 O VAL A 201 D2 DOD A 573 1.59 REMARK 500 OE1 GLU A 39 D1 DOD A 549 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 59 O DOD A 668 2555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -70.03 -67.92 REMARK 500 HIS A 118 31.09 -151.75 REMARK 500 SER A 124 151.44 167.58 REMARK 500 ASP A 165 -155.42 -142.53 REMARK 500 ASP A 175 108.91 -161.61 REMARK 500 SER A 226 160.97 175.26 REMARK 500 ASN A 270 25.33 -145.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 136 OE2 REMARK 620 2 TYR A 91 O 169.6 REMARK 620 3 ILE A 94 O 93.3 76.3 REMARK 620 4 ILE A 88 O 99.7 78.6 83.9 REMARK 620 5 ASN A 92 O 107.5 78.3 115.2 145.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8HX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N3M RELATED DB: PDB REMARK 900 NEUTRON STRUCTURE OF 8-AZAXANTHINE COMPLEX REMARK 900 RELATED ID: 3L9G RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE HYDROGENATED SUBSTRATE COMPLEX REMARK 900 RELATED ID: 4N9S RELATED DB: PDB REMARK 900 HIGH RESOLUTION X-RAY STRUCTURE OF URATE OXIDASE IN COMPLEX WITH 8- REMARK 900 HYDROXYXANTHINE REMARK 900 RELATED ID: 4N9V RELATED DB: PDB REMARK 900 HIGH RESOLUTION X-RAY STRUCTURE OF URATE OXIDASE IN COMPLEX WITH 8- REMARK 900 AZAXANTHINE DBREF 4N9M A 1 301 UNP Q00511 URIC_ASPFL 2 302 SEQADV 4N9M ACE A 0 UNP Q00511 ACETYLATION SEQRES 1 A 302 ACE SER ALA VAL LYS ALA ALA ARG TYR GLY LYS ASP ASN SEQRES 2 A 302 VAL ARG VAL TYR LYS VAL HIS LYS ASP GLU LYS THR GLY SEQRES 3 A 302 VAL GLN THR VAL TYR GLU MET THR VAL CYS VAL LEU LEU SEQRES 4 A 302 GLU GLY GLU ILE GLU THR SER TYR THR LYS ALA ASP ASN SEQRES 5 A 302 SER VAL ILE VAL ALA THR ASP SER ILE LYS ASN THR ILE SEQRES 6 A 302 TYR ILE THR ALA LYS GLN ASN PRO VAL THR PRO PRO GLU SEQRES 7 A 302 LEU PHE GLY SER ILE LEU GLY THR HIS PHE ILE GLU LYS SEQRES 8 A 302 TYR ASN HIS ILE HIS ALA ALA HIS VAL ASN ILE VAL CYS SEQRES 9 A 302 HIS ARG TRP THR ARG MET ASP ILE ASP GLY LYS PRO HIS SEQRES 10 A 302 PRO HIS SER PHE ILE ARG ASP SER GLU GLU LYS ARG ASN SEQRES 11 A 302 VAL GLN VAL ASP VAL VAL GLU GLY LYS GLY ILE ASP ILE SEQRES 12 A 302 LYS SER SER LEU SER GLY LEU THR VAL LEU LYS SER THR SEQRES 13 A 302 ASN SER GLN PHE TRP GLY PHE LEU ARG ASP GLU TYR THR SEQRES 14 A 302 THR LEU LYS GLU THR TRP ASP ARG ILE LEU SER THR ASP SEQRES 15 A 302 VAL ASP ALA THR TRP GLN TRP LYS ASN PHE SER GLY LEU SEQRES 16 A 302 GLN GLU VAL ARG SER HIS VAL PRO LYS PHE ASP ALA THR SEQRES 17 A 302 TRP ALA THR ALA ARG GLU VAL THR LEU LYS THR PHE ALA SEQRES 18 A 302 GLU ASP ASN SER ALA SER VAL GLN ALA THR MET TYR LYS SEQRES 19 A 302 MET ALA GLU GLN ILE LEU ALA ARG GLN GLN LEU ILE GLU SEQRES 20 A 302 THR VAL GLU TYR SER LEU PRO ASN LYS HIS TYR PHE GLU SEQRES 21 A 302 ILE ASP LEU SER TRP HIS LYS GLY LEU GLN ASN THR GLY SEQRES 22 A 302 LYS ASN ALA GLU VAL PHE ALA PRO GLN SER ASP PRO ASN SEQRES 23 A 302 GLY LEU ILE LYS CYS THR VAL GLY ARG SER SER LEU LYS SEQRES 24 A 302 SER LYS LEU HET ACE A 0 3 HET 8HX A 401 15 HET CL A 402 1 HET NA A 403 1 HETNAM ACE ACETYL GROUP HETNAM 8HX 8-HYDROXY-3,9-DIHYDRO-1H-PURINE-2,6-DIONE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN 8HX 8-HYDROXYXANTHINE FORMUL 1 ACE C2 H4 O FORMUL 2 8HX C5 H4 N4 O3 FORMUL 3 CL CL 1- FORMUL 4 NA NA 1+ FORMUL 5 DOD *187(D2 O) HELIX 1 1 GLU A 43 LYS A 48 1 6 HELIX 2 2 ASP A 50 ILE A 54 5 5 HELIX 3 3 ALA A 56 ASN A 71 1 16 HELIX 4 4 PRO A 75 TYR A 91 1 17 HELIX 5 5 GLY A 193 HIS A 200 1 8 HELIX 6 6 HIS A 200 ASP A 222 1 23 HELIX 7 7 SER A 226 GLN A 242 1 17 HELIX 8 8 THR A 271 ALA A 275 5 5 SHEET 1 A 8 TYR A 8 LYS A 20 0 SHEET 2 A 8 GLN A 27 GLU A 39 -1 O LEU A 38 N TYR A 8 SHEET 3 A 8 ALA A 96 HIS A 104 -1 O HIS A 98 N LEU A 37 SHEET 4 A 8 LYS A 127 VAL A 135 -1 O VAL A 134 N ALA A 97 SHEET 5 A 8 GLY A 139 LYS A 153 -1 O ASP A 141 N ASP A 133 SHEET 6 A 8 LEU A 178 TRP A 188 -1 O VAL A 182 N LEU A 149 SHEET 7 A 8 ILE A 245 ASN A 254 -1 O GLU A 249 N THR A 185 SHEET 8 A 8 GLY A 286 VAL A 292 -1 O ILE A 288 N LEU A 252 SHEET 1 B 2 THR A 107 ILE A 111 0 SHEET 2 B 2 LYS A 114 ILE A 121 -1 O HIS A 116 N MET A 109 SHEET 1 C 2 TYR A 257 GLU A 259 0 SHEET 2 C 2 PHE A 278 PRO A 280 -1 O ALA A 279 N PHE A 258 LINK C ACE A 0 N SER A 1 1555 1555 1.33 LINK OE2 GLU A 136 NA NA A 403 1555 1555 2.87 LINK O TYR A 91 NA NA A 403 1555 1555 2.88 LINK O ILE A 94 NA NA A 403 1555 1555 2.96 LINK O ILE A 88 NA NA A 403 1555 1555 3.03 LINK O ASN A 92 NA NA A 403 1555 1555 3.11 CISPEP 1 THR A 74 PRO A 75 0 -2.98 CISPEP 2 ASP A 283 PRO A 284 0 -2.43 SITE 1 AC1 14 ILE A 54 ALA A 56 THR A 57 ASP A 58 SITE 2 AC1 14 PHE A 159 LEU A 170 ARG A 176 SER A 226 SITE 3 AC1 14 VAL A 227 GLN A 228 ASN A 254 CL A 402 SITE 4 AC1 14 DOD A 536 DOD A 687 SITE 1 AC2 4 THR A 57 ASN A 254 GLY A 286 8HX A 401 SITE 1 AC3 6 ILE A 88 TYR A 91 ASN A 92 ILE A 94 SITE 2 AC3 6 HIS A 95 GLU A 136 CRYST1 80.180 96.260 105.510 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012469 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009479 0.00000 HETATM 1 C ACE A 0 21.904 9.558 19.936 1.00 50.40 C HETATM 2 O ACE A 0 21.528 8.454 19.545 1.00 51.49 O HETATM 3 CH3 ACE A 0 23.190 10.173 19.471 1.00 48.33 C