HEADER TRANSFERASE 21-OCT-13 4N9U TITLE THE ROLE OF LYSINE 200 IN THE HUMAN FARNESYL PYROPHOSPHATE SYNTHASE TITLE 2 CATALYTIC MECHANISM AND THE MODE OF INHIBITION BY THE NITROGEN- TITLE 3 CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 KEYWDS ALPHA-HELICAL PRENYLTRANSFERASE FOLD, ISOPRENE BIOSYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, STEROID BIOSYNTHESIS, DIMETHYLALLYL PYROPHOSPHATE, KEYWDS 3 ISOPENTENYL PYROPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.A.KWAASI,K.L.KAVANAGH, AUTHOR 2 A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,U.OPPERMANN,R.G.G.RUSSELL, AUTHOR 3 J.E.DUNFORD REVDAT 2 20-SEP-23 4N9U 1 REMARK SEQADV HETSYN LINK REVDAT 1 22-OCT-14 4N9U 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.A.KWAASI, JRNL AUTH 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,U.OPPERMANN, JRNL AUTH 3 R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL THE ROLE OF LYSINE 200 IN THE HUMAN FARNESYL PYROPHOSPHATE JRNL TITL 2 SYNTHASE CATALYTIC MECHANISM AND THE MODE OF INHIBITION BY JRNL TITL 3 THE NITROGEN-CONTAINING BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1303 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2835 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2305 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2702 REMARK 3 BIN R VALUE (WORKING SET) : 0.2287 REMARK 3 BIN FREE R VALUE : 0.2711 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.69 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.53170 REMARK 3 B22 (A**2) : 4.53170 REMARK 3 B33 (A**2) : -9.06350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.180 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2773 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3769 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1288 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 401 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2773 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 355 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3439 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|8 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): 29.9053 0.8765 24.9107 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: -0.3040 REMARK 3 T33: 0.2752 T12: -0.1520 REMARK 3 T13: -0.0870 T23: -0.1477 REMARK 3 L TENSOR REMARK 3 L11: 3.5668 L22: 1.5194 REMARK 3 L33: 0.0500 L12: 1.0550 REMARK 3 L13: -0.5825 L23: -1.5654 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.0879 S13: 0.0602 REMARK 3 S21: 0.1745 S22: 0.0722 S23: -0.0456 REMARK 3 S31: -0.2061 S32: 0.1763 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|29 - 52} REMARK 3 ORIGIN FOR THE GROUP (A): 26.0072 -15.8764 33.2467 REMARK 3 T TENSOR REMARK 3 T11: -0.2154 T22: -0.2818 REMARK 3 T33: 0.3040 T12: -0.0648 REMARK 3 T13: -0.0661 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.6157 L22: 0.1219 REMARK 3 L33: 5.1287 L12: -2.8740 REMARK 3 L13: -2.5536 L23: 1.3249 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.2812 S13: 0.1460 REMARK 3 S21: 0.4056 S22: 0.0332 S23: -0.1333 REMARK 3 S31: -0.1563 S32: -0.1183 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|53 - 78} REMARK 3 ORIGIN FOR THE GROUP (A): 25.9259 5.5779 17.3363 REMARK 3 T TENSOR REMARK 3 T11: -0.0238 T22: -0.3040 REMARK 3 T33: 0.3040 T12: -0.0823 REMARK 3 T13: -0.0030 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.2567 L22: 8.1160 REMARK 3 L33: 3.7954 L12: 2.9104 REMARK 3 L13: 0.5707 L23: -0.5546 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0927 S13: 0.1463 REMARK 3 S21: 0.2802 S22: -0.0702 S23: 0.0378 REMARK 3 S31: -0.5387 S32: -0.0088 S33: 0.0269 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - 152} REMARK 3 ORIGIN FOR THE GROUP (A): 25.4723 -11.6884 21.3491 REMARK 3 T TENSOR REMARK 3 T11: -0.2505 T22: -0.3040 REMARK 3 T33: 0.3040 T12: -0.0655 REMARK 3 T13: -0.0077 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.8243 L22: 4.5538 REMARK 3 L33: 1.8464 L12: -0.2554 REMARK 3 L13: 0.0108 L23: -0.3711 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.1033 S13: 0.1171 REMARK 3 S21: 0.3912 S22: -0.0428 S23: 0.0487 REMARK 3 S31: -0.3177 S32: 0.1093 S33: -0.0794 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|153 - 177} REMARK 3 ORIGIN FOR THE GROUP (A): 19.0775 -13.4569 8.9971 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.3040 REMARK 3 T33: 0.3040 T12: -0.0516 REMARK 3 T13: -0.0300 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.0453 L22: 2.6551 REMARK 3 L33: 1.6182 L12: -0.1798 REMARK 3 L13: -0.4572 L23: -0.2639 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: 0.1881 S13: 0.3543 REMARK 3 S21: -0.0544 S22: 0.0774 S23: 0.2517 REMARK 3 S31: -0.1822 S32: -0.1262 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|178 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): 33.5699 -13.8991 0.6439 REMARK 3 T TENSOR REMARK 3 T11: -0.2432 T22: -0.3040 REMARK 3 T33: 0.3040 T12: -0.0382 REMARK 3 T13: -0.0083 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 1.7585 L22: 3.6344 REMARK 3 L33: 1.2170 L12: -0.4681 REMARK 3 L13: 0.0619 L23: 0.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.3536 S13: 0.1039 REMARK 3 S21: -0.3756 S22: -0.0478 S23: -0.2251 REMARK 3 S31: 0.0161 S32: 0.0919 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|295 - 332} REMARK 3 ORIGIN FOR THE GROUP (A): 41.4552 -8.0932 -4.4737 REMARK 3 T TENSOR REMARK 3 T11: -0.2103 T22: -0.3040 REMARK 3 T33: 0.3040 T12: -0.0643 REMARK 3 T13: 0.0838 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 2.3698 L22: 5.0923 REMARK 3 L33: 1.1839 L12: -0.6142 REMARK 3 L13: 0.9599 L23: -0.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.2189 S12: 0.3922 S13: 0.0819 REMARK 3 S21: -0.5252 S22: 0.0765 S23: -0.4673 REMARK 3 S31: 0.0200 S32: 0.3201 S33: 0.1424 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|333 - 349} REMARK 3 ORIGIN FOR THE GROUP (A): 29.5765 6.5356 4.3729 REMARK 3 T TENSOR REMARK 3 T11: -0.1434 T22: -0.3040 REMARK 3 T33: 0.3040 T12: 0.0008 REMARK 3 T13: -0.0574 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 1.2985 L22: 7.1886 REMARK 3 L33: 0.3889 L12: 2.7087 REMARK 3 L13: 1.2512 L23: 1.8359 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.0128 S13: 0.1276 REMARK 3 S21: 0.1556 S22: -0.0120 S23: 0.0654 REMARK 3 S31: -0.0985 S32: -0.0608 S33: -0.0272 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000082933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 52.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.79000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.55500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.39500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.55500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.18500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.55500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.39500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.55500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.18500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.79000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.79000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 LYS A 350 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 54 CG1 CG2 CD1 REMARK 470 GLU A 73 OE1 OE2 REMARK 470 LYS A 121 CE NZ REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 VAL A 183 CG1 CG2 REMARK 470 VAL A 186 CG1 CG2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 346 NE CZ NH1 NH2 REMARK 470 LYS A 347 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -74.68 -100.93 REMARK 500 ALA A 178 61.06 -113.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 87.2 REMARK 620 3 RIS A 404 O12 101.6 163.7 REMARK 620 4 RIS A 404 O15 87.3 79.5 87.2 REMARK 620 5 HOH A 553 O 84.3 99.0 95.6 171.5 REMARK 620 6 HOH A 554 O 157.0 91.6 85.6 115.1 73.1 REMARK 620 7 HOH A 581 O 145.8 79.7 85.5 59.4 128.7 55.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 90.5 REMARK 620 3 RIS A 404 O15 98.4 85.1 REMARK 620 4 HOH A 556 O 84.8 100.6 173.5 REMARK 620 5 HOH A 557 O 163.5 105.8 86.0 89.4 REMARK 620 6 HOH A 558 O 86.2 172.8 89.1 85.5 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 404 O11 98.8 REMARK 620 3 RIS A 404 O16 90.0 112.5 REMARK 620 4 HOH A 550 O 81.7 95.8 151.4 REMARK 620 5 HOH A 551 O 68.7 164.2 78.2 73.3 REMARK 620 6 HOH A 552 O 134.5 122.9 89.9 77.2 66.8 REMARK 620 7 HOH A 582 O 160.0 65.5 107.2 87.4 124.0 57.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 4KPD RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 4KQS RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 4KQU RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE MUTANT REMARK 900 RELATED ID: 1YQ7 RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE NATIVE COMPLEX REMARK 900 RELATED ID: 4NUA RELATED DB: PDB REMARK 900 RELATED ID: 4NG6 RELATED DB: PDB REMARK 900 RELATED ID: 4NKE RELATED DB: PDB REMARK 900 RELATED ID: 4NKF RELATED DB: PDB DBREF 4N9U A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4N9U MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4N9U GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4N9U SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4N9U SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4N9U SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4N9U SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4N9U GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4N9U ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4N9U GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4N9U ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4N9U LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4N9U TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4N9U PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4N9U GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4N9U GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4N9U HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4N9U THR A 53 UNP P14324 ALA 119 CONFLICT SEQADV 4N9U GLY A 200 UNP P14324 LYS 266 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN THR ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 GLY THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET RIS A 404 17 HET EDO A 405 4 HET EDO A 406 4 HETNAM MG MAGNESIUM ION HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN RIS RISEDRONATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 3(MG 2+) FORMUL 5 RIS C7 H11 N O7 P2 FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *121(H2 O) HELIX 1 1 TYR A 10 HIS A 20 1 11 HELIX 2 2 HIS A 20 GLU A 30 1 11 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 THR A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 GLU A 73 GLN A 77 5 5 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 ASP A 184 PHE A 188 5 5 HELIX 13 13 THR A 189 THR A 201 1 13 HELIX 14 14 THR A 201 PHE A 206 1 6 HELIX 15 15 PHE A 206 ALA A 217 1 12 HELIX 16 16 GLY A 221 GLY A 250 1 30 HELIX 17 17 ASP A 251 GLY A 256 1 6 HELIX 18 18 SER A 268 ALA A 278 1 11 HELIX 19 19 THR A 279 TYR A 290 1 12 HELIX 20 20 GLU A 294 LEU A 308 1 15 HELIX 21 21 ASP A 309 ALA A 333 1 25 HELIX 22 22 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD1 ASP A 103 MG MG A 401 1555 1555 2.00 LINK OD2 ASP A 103 MG MG A 403 1555 1555 1.93 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.22 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.17 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.17 LINK MG MG A 401 O12 RIS A 404 1555 1555 2.02 LINK MG MG A 401 O15 RIS A 404 1555 1555 2.30 LINK MG MG A 401 O HOH A 553 1555 1555 2.28 LINK MG MG A 401 O HOH A 554 1555 1555 1.88 LINK MG MG A 401 O HOH A 581 1555 1555 2.73 LINK MG MG A 402 O11 RIS A 404 1555 1555 1.87 LINK MG MG A 402 O16 RIS A 404 1555 1555 2.02 LINK MG MG A 402 O HOH A 550 1555 1555 2.02 LINK MG MG A 402 O HOH A 551 1555 1555 2.27 LINK MG MG A 402 O HOH A 552 1555 1555 2.07 LINK MG MG A 402 O HOH A 582 1555 1555 2.78 LINK MG MG A 403 O15 RIS A 404 1555 1555 2.10 LINK MG MG A 403 O HOH A 556 1555 1555 2.42 LINK MG MG A 403 O HOH A 557 1555 1555 2.23 LINK MG MG A 403 O HOH A 558 1555 1555 2.05 CISPEP 1 ALA A 334 PRO A 335 0 3.85 SITE 1 AC1 7 ASP A 103 ASP A 107 MG A 403 RIS A 404 SITE 2 AC1 7 HOH A 553 HOH A 554 HOH A 581 SITE 1 AC2 6 ASP A 243 RIS A 404 HOH A 550 HOH A 551 SITE 2 AC2 6 HOH A 552 HOH A 582 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 RIS A 404 SITE 2 AC3 7 HOH A 556 HOH A 557 HOH A 558 SITE 1 AC4 26 LEU A 100 ASP A 103 ASP A 107 ARG A 112 SITE 2 AC4 26 GLN A 171 GLY A 200 THR A 201 GLN A 240 SITE 3 AC4 26 ASP A 243 LYS A 257 MG A 401 MG A 402 SITE 4 AC4 26 MG A 403 HOH A 540 HOH A 549 HOH A 550 SITE 5 AC4 26 HOH A 551 HOH A 552 HOH A 554 HOH A 557 SITE 6 AC4 26 HOH A 558 HOH A 562 HOH A 563 HOH A 579 SITE 7 AC4 26 HOH A 581 HOH A 582 SITE 1 AC5 7 GLU A 136 ALA A 137 TYR A 140 LEU A 161 SITE 2 AC5 7 SER A 164 HOH A 523 HOH A 564 SITE 1 AC6 4 ARG A 141 GLN A 162 HOH A 523 HOH A 608 CRYST1 111.110 111.110 69.580 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014372 0.00000