HEADER TOXIN 22-OCT-13 4NAM TITLE 1.7A STRUCTURE OF 5-FLUORO TRYPTOPHAN LABELED PROTECTIVE ANTIGEN TITLE 2 (W206Y) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTECTIVE ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PA, ANTHRAX TOXINS TRANSLOCATING PROTEIN, PA-83, PA83, COMPND 5 PROTECTIVE ANTIGEN PA-20, PA20, PROTECTIVE ANTIGEN PA-63, PA63; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 GENE: PAGA, PAG, PXO1-110, BXA0164, GBAA_PXO1_0164; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80 KEYWDS ANTHRAX, TOXIN, 5-FLUOROTRYPTOPHAN, PORE EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,F.CHADEGANI,V.MULANGI,M.MIYAGI,J.G.BANN REVDAT 4 20-SEP-23 4NAM 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4NAM 1 REMARK REVDAT 2 24-DEC-14 4NAM 1 JRNL REVDAT 1 22-JAN-14 4NAM 0 JRNL AUTH F.CHADEGANI,S.LOVELL,V.MULLANGI,M.MIYAGI,K.P.BATTAILE, JRNL AUTH 2 J.G.BANN JRNL TITL (19)F NUCLEAR MAGNETIC RESONANCE AND CRYSTALLOGRAPHIC JRNL TITL 2 STUDIES OF 5-FLUOROTRYPTOPHAN-LABELED ANTHRAX PROTECTIVE JRNL TITL 3 ANTIGEN AND EFFECTS OF THE RECEPTOR ON STABILITY. JRNL REF BIOCHEMISTRY V. 53 690 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24387629 JRNL DOI 10.1021/BI401405S REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1356 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 82781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9949 - 5.2799 0.97 2908 152 0.1877 0.2266 REMARK 3 2 5.2799 - 4.1917 0.89 2523 147 0.1418 0.1523 REMARK 3 3 4.1917 - 3.6620 0.97 2769 140 0.1505 0.1875 REMARK 3 4 3.6620 - 3.3273 0.98 2770 146 0.1712 0.1517 REMARK 3 5 3.3273 - 3.0889 0.99 2764 141 0.1785 0.2168 REMARK 3 6 3.0889 - 2.9068 0.97 2717 127 0.1878 0.2022 REMARK 3 7 2.9068 - 2.7612 0.96 2667 153 0.1860 0.2469 REMARK 3 8 2.7612 - 2.6410 0.88 2439 118 0.2009 0.2553 REMARK 3 9 2.6410 - 2.5394 0.92 2535 163 0.1895 0.2021 REMARK 3 10 2.5394 - 2.4518 0.96 2667 136 0.1914 0.2295 REMARK 3 11 2.4518 - 2.3751 0.97 2679 142 0.1730 0.2203 REMARK 3 12 2.3751 - 2.3072 0.99 2729 145 0.1649 0.1909 REMARK 3 13 2.3072 - 2.2465 1.00 2769 139 0.1646 0.2154 REMARK 3 14 2.2465 - 2.1917 0.99 2749 141 0.1646 0.2064 REMARK 3 15 2.1917 - 2.1418 0.99 2745 124 0.1737 0.1952 REMARK 3 16 2.1418 - 2.0963 0.98 2689 142 0.1747 0.2263 REMARK 3 17 2.0963 - 2.0543 0.92 2547 120 0.1830 0.2227 REMARK 3 18 2.0543 - 2.0156 0.94 2615 132 0.1750 0.2264 REMARK 3 19 2.0156 - 1.9796 0.95 2584 158 0.1850 0.2140 REMARK 3 20 1.9796 - 1.9460 0.88 2461 121 0.2183 0.2553 REMARK 3 21 1.9460 - 1.9146 0.86 2318 128 0.2176 0.2699 REMARK 3 22 1.9146 - 1.8852 0.90 2502 112 0.2070 0.2511 REMARK 3 23 1.8852 - 1.8574 0.92 2544 136 0.2023 0.2148 REMARK 3 24 1.8574 - 1.8313 0.94 2535 143 0.1993 0.1962 REMARK 3 25 1.8313 - 1.8065 0.93 2563 129 0.2102 0.2724 REMARK 3 26 1.8065 - 1.7831 0.94 2553 139 0.2102 0.2398 REMARK 3 27 1.7831 - 1.7608 0.94 2620 131 0.2218 0.2680 REMARK 3 28 1.7608 - 1.7396 0.94 2553 147 0.2259 0.2895 REMARK 3 29 1.7396 - 1.7193 0.95 2602 146 0.2313 0.2475 REMARK 3 30 1.7193 - 1.7000 0.94 2516 151 0.2401 0.2662 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5458 REMARK 3 ANGLE : 1.108 7452 REMARK 3 CHIRALITY : 0.078 869 REMARK 3 PLANARITY : 0.006 971 REMARK 3 DIHEDRAL : 13.135 2013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1857 -8.7899 3.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1518 REMARK 3 T33: 0.1084 T12: 0.0680 REMARK 3 T13: -0.0860 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.9943 L22: 0.5595 REMARK 3 L33: 1.7444 L12: 0.2165 REMARK 3 L13: 0.7505 L23: -0.1946 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: -0.0713 S13: 0.1027 REMARK 3 S21: 0.0355 S22: -0.0184 S23: 0.1245 REMARK 3 S31: -0.3474 S32: -0.2659 S33: -0.1780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4954 -18.2797 23.4271 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1015 REMARK 3 T33: 0.1140 T12: -0.0063 REMARK 3 T13: -0.0085 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.2120 L22: 0.1857 REMARK 3 L33: 0.3072 L12: -0.2168 REMARK 3 L13: 0.3614 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.0135 S13: 0.1283 REMARK 3 S21: -0.0334 S22: 0.0078 S23: -0.0612 REMARK 3 S31: -0.0337 S32: 0.0240 S33: -0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 603 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3627 -26.5604 26.8387 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1017 REMARK 3 T33: 0.0886 T12: 0.0065 REMARK 3 T13: -0.0004 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.7902 L22: 0.2577 REMARK 3 L33: 0.1196 L12: 0.1958 REMARK 3 L13: 0.1634 L23: 0.1378 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.0663 S13: -0.0397 REMARK 3 S21: 0.0115 S22: 0.0521 S23: -0.0302 REMARK 3 S31: -0.0166 S32: 0.0027 S33: 0.0024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 604 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4780 -44.7730 22.0410 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.1333 REMARK 3 T33: 0.1777 T12: 0.0337 REMARK 3 T13: -0.0216 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.9649 L22: 1.5785 REMARK 3 L33: 0.6075 L12: -0.0848 REMARK 3 L13: -0.3792 L23: 0.5757 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: 0.0672 S13: -0.0879 REMARK 3 S21: -0.2599 S22: -0.0571 S23: -0.0154 REMARK 3 S31: -0.0625 S32: -0.0222 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86339 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.435 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (V/V) PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), 0.05 M HEPES, 0.2 M POTASSIUM CHLORIDE, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.64900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.86350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.97700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.86350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.64900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.97700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 GLU A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 LYS A 99 REMARK 465 ALA A 100 REMARK 465 SER A 101 REMARK 465 ASN A 102 REMARK 465 SER A 103 REMARK 465 LYS A 197 REMARK 465 ASN A 198 REMARK 465 LYS A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 212 REMARK 465 LYS A 213 REMARK 465 LYS A 214 REMARK 465 GLY A 215 REMARK 465 SER A 301 REMARK 465 GLU A 302 REMARK 465 VAL A 303 REMARK 465 HIS A 304 REMARK 465 GLY A 305 REMARK 465 ASN A 306 REMARK 465 ALA A 307 REMARK 465 GLU A 308 REMARK 465 VAL A 309 REMARK 465 HIS A 310 REMARK 465 ALA A 311 REMARK 465 SER A 312 REMARK 465 PHE A 313 REMARK 465 PHE A 314 REMARK 465 ASP A 315 REMARK 465 ILE A 316 REMARK 465 GLY A 317 REMARK 465 GLY A 318 REMARK 465 SER A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 ALA A 322 REMARK 465 GLY A 323 REMARK 465 PHE A 324 REMARK 465 GLY A 735 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 LYS A 70 CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ASP A 93 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 ASN A 104 CG OD1 ND2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 128 CE NZ REMARK 470 GLN A 140 CG CD OE1 NE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 159 CE NZ REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LYS A 165 CE NZ REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 245 CD CE NZ REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 GLN A 424 CG CD OE1 NE2 REMARK 470 ASP A 425 CG OD1 OD2 REMARK 470 ARG A 468 CD NE CZ NH1 NH2 REMARK 470 ARG A 470 CD NE CZ NH1 NH2 REMARK 470 LYS A 528 NZ REMARK 470 ASN A 537 CG OD1 ND2 REMARK 470 GLN A 556 CD OE1 NE2 REMARK 470 GLN A 557 CG CD OE1 NE2 REMARK 470 LYS A 563 CE NZ REMARK 470 GLU A 568 CD OE1 OE2 REMARK 470 ARG A 600 CD NE CZ NH1 NH2 REMARK 470 ARG A 617 CD NE CZ NH1 NH2 REMARK 470 LYS A 633 CD CE NZ REMARK 470 ARG A 636 NE CZ NH1 NH2 REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 LYS A 673 CD CE NZ REMARK 470 LYS A 684 CD CE NZ REMARK 470 GLU A 712 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1225 O HOH A 1297 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 40 -169.59 -113.93 REMARK 500 ALA A 83 55.45 -152.31 REMARK 500 ASP A 92 -125.89 44.87 REMARK 500 ASP A 177 70.34 -154.93 REMARK 500 ASP A 244 120.81 -37.55 REMARK 500 ASN A 388 31.76 -153.83 REMARK 500 GLU A 618 87.01 -69.08 REMARK 500 ASN A 657 65.46 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 177 OD1 REMARK 620 2 ASP A 179 OD1 81.6 REMARK 620 3 ASP A 181 OD1 93.1 83.4 REMARK 620 4 ILE A 183 O 84.8 166.3 96.0 REMARK 620 5 GLU A 188 OE2 176.7 101.5 88.5 92.2 REMARK 620 6 HOH A 904 O 94.7 87.4 166.9 95.1 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD2 REMARK 620 2 ASP A 181 OD2 85.9 REMARK 620 3 GLU A 188 OE1 126.2 96.0 REMARK 620 4 GLU A 188 OE2 79.9 77.4 48.8 REMARK 620 5 SER A 222 O 83.4 160.6 77.6 84.8 REMARK 620 6 LYS A 225 O 75.6 105.7 150.8 154.9 87.3 REMARK 620 7 ASP A 235 OD2 152.9 90.9 80.9 125.6 105.8 79.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 802 DBREF 4NAM A 1 735 UNP P13423 PAG_BACAN 30 764 SEQADV 4NAM TYR A 206 UNP P13423 TRP 235 ENGINEERED MUTATION SEQRES 1 A 735 GLU VAL LYS GLN GLU ASN ARG LEU LEU ASN GLU SER GLU SEQRES 2 A 735 SER SER SER GLN GLY LEU LEU GLY TYR TYR PHE SER ASP SEQRES 3 A 735 LEU ASN PHE GLN ALA PRO MET VAL VAL THR SER SER THR SEQRES 4 A 735 THR GLY ASP LEU SER ILE PRO SER SER GLU LEU GLU ASN SEQRES 5 A 735 ILE PRO SER GLU ASN GLN TYR PHE GLN SER ALA ILE FTR SEQRES 6 A 735 SER GLY PHE ILE LYS VAL LYS LYS SER ASP GLU TYR THR SEQRES 7 A 735 PHE ALA THR SER ALA ASP ASN HIS VAL THR MET FTR VAL SEQRES 8 A 735 ASP ASP GLN GLU VAL ILE ASN LYS ALA SER ASN SER ASN SEQRES 9 A 735 LYS ILE ARG LEU GLU LYS GLY ARG LEU TYR GLN ILE LYS SEQRES 10 A 735 ILE GLN TYR GLN ARG GLU ASN PRO THR GLU LYS GLY LEU SEQRES 11 A 735 ASP PHE LYS LEU TYR FTR THR ASP SER GLN ASN LYS LYS SEQRES 12 A 735 GLU VAL ILE SER SER ASP ASN LEU GLN LEU PRO GLU LEU SEQRES 13 A 735 LYS GLN LYS SER SER ASN SER ARG LYS LYS ARG SER THR SEQRES 14 A 735 SER ALA GLY PRO THR VAL PRO ASP ARG ASP ASN ASP GLY SEQRES 15 A 735 ILE PRO ASP SER LEU GLU VAL GLU GLY TYR THR VAL ASP SEQRES 16 A 735 VAL LYS ASN LYS ARG THR PHE LEU SER PRO TYR ILE SER SEQRES 17 A 735 ASN ILE HIS GLU LYS LYS GLY LEU THR LYS TYR LYS SER SEQRES 18 A 735 SER PRO GLU LYS FTR SER THR ALA SER ASP PRO TYR SER SEQRES 19 A 735 ASP PHE GLU LYS VAL THR GLY ARG ILE ASP LYS ASN VAL SEQRES 20 A 735 SER PRO GLU ALA ARG HIS PRO LEU VAL ALA ALA TYR PRO SEQRES 21 A 735 ILE VAL HIS VAL ASP MET GLU ASN ILE ILE LEU SER LYS SEQRES 22 A 735 ASN GLU ASP GLN SER THR GLN ASN THR ASP SER GLN THR SEQRES 23 A 735 ARG THR ILE SER LYS ASN THR SER THR SER ARG THR HIS SEQRES 24 A 735 THR SER GLU VAL HIS GLY ASN ALA GLU VAL HIS ALA SER SEQRES 25 A 735 PHE PHE ASP ILE GLY GLY SER VAL SER ALA GLY PHE SER SEQRES 26 A 735 ASN SER ASN SER SER THR VAL ALA ILE ASP HIS SER LEU SEQRES 27 A 735 SER LEU ALA GLY GLU ARG THR FTR ALA GLU THR MET GLY SEQRES 28 A 735 LEU ASN THR ALA ASP THR ALA ARG LEU ASN ALA ASN ILE SEQRES 29 A 735 ARG TYR VAL ASN THR GLY THR ALA PRO ILE TYR ASN VAL SEQRES 30 A 735 LEU PRO THR THR SER LEU VAL LEU GLY LYS ASN GLN THR SEQRES 31 A 735 LEU ALA THR ILE LYS ALA LYS GLU ASN GLN LEU SER GLN SEQRES 32 A 735 ILE LEU ALA PRO ASN ASN TYR TYR PRO SER LYS ASN LEU SEQRES 33 A 735 ALA PRO ILE ALA LEU ASN ALA GLN ASP ASP PHE SER SER SEQRES 34 A 735 THR PRO ILE THR MET ASN TYR ASN GLN PHE LEU GLU LEU SEQRES 35 A 735 GLU LYS THR LYS GLN LEU ARG LEU ASP THR ASP GLN VAL SEQRES 36 A 735 TYR GLY ASN ILE ALA THR TYR ASN PHE GLU ASN GLY ARG SEQRES 37 A 735 VAL ARG VAL ASP THR GLY SER ASN FTR SER GLU VAL LEU SEQRES 38 A 735 PRO GLN ILE GLN GLU THR THR ALA ARG ILE ILE PHE ASN SEQRES 39 A 735 GLY LYS ASP LEU ASN LEU VAL GLU ARG ARG ILE ALA ALA SEQRES 40 A 735 VAL ASN PRO SER ASP PRO LEU GLU THR THR LYS PRO ASP SEQRES 41 A 735 MET THR LEU LYS GLU ALA LEU LYS ILE ALA PHE GLY PHE SEQRES 42 A 735 ASN GLU PRO ASN GLY ASN LEU GLN TYR GLN GLY LYS ASP SEQRES 43 A 735 ILE THR GLU PHE ASP PHE ASN PHE ASP GLN GLN THR SER SEQRES 44 A 735 GLN ASN ILE LYS ASN GLN LEU ALA GLU LEU ASN ALA THR SEQRES 45 A 735 ASN ILE TYR THR VAL LEU ASP LYS ILE LYS LEU ASN ALA SEQRES 46 A 735 LYS MET ASN ILE LEU ILE ARG ASP LYS ARG PHE HIS TYR SEQRES 47 A 735 ASP ARG ASN ASN ILE ALA VAL GLY ALA ASP GLU SER VAL SEQRES 48 A 735 VAL LYS GLU ALA HIS ARG GLU VAL ILE ASN SER SER THR SEQRES 49 A 735 GLU GLY LEU LEU LEU ASN ILE ASP LYS ASP ILE ARG LYS SEQRES 50 A 735 ILE LEU SER GLY TYR ILE VAL GLU ILE GLU ASP THR GLU SEQRES 51 A 735 GLY LEU LYS GLU VAL ILE ASN ASP ARG TYR ASP MET LEU SEQRES 52 A 735 ASN ILE SER SER LEU ARG GLN ASP GLY LYS THR PHE ILE SEQRES 53 A 735 ASP PHE LYS LYS TYR ASN ASP LYS LEU PRO LEU TYR ILE SEQRES 54 A 735 SER ASN PRO ASN TYR LYS VAL ASN VAL TYR ALA VAL THR SEQRES 55 A 735 LYS GLU ASN THR ILE ILE ASN PRO SER GLU ASN GLY ASP SEQRES 56 A 735 THR SER THR ASN GLY ILE LYS LYS ILE LEU ILE PHE SER SEQRES 57 A 735 LYS LYS GLY TYR GLU ILE GLY MODRES 4NAM FTR A 65 TRP FLUOROTRYPTOPHANE MODRES 4NAM FTR A 90 TRP FLUOROTRYPTOPHANE MODRES 4NAM FTR A 136 TRP FLUOROTRYPTOPHANE MODRES 4NAM FTR A 226 TRP FLUOROTRYPTOPHANE MODRES 4NAM FTR A 346 TRP FLUOROTRYPTOPHANE MODRES 4NAM FTR A 477 TRP FLUOROTRYPTOPHANE HET FTR A 65 15 HET FTR A 90 15 HET FTR A 136 15 HET FTR A 226 15 HET FTR A 346 15 HET FTR A 477 15 HET CA A 801 1 HET CA A 802 1 HETNAM FTR FLUOROTRYPTOPHANE HETNAM CA CALCIUM ION FORMUL 1 FTR 6(C11 H11 F N2 O2) FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *400(H2 O) HELIX 1 1 PRO A 46 LEU A 50 5 5 HELIX 2 2 PRO A 54 TYR A 59 5 6 HELIX 3 3 ALA A 83 ASN A 85 5 3 HELIX 4 4 SER A 147 ASP A 149 5 3 HELIX 5 5 PRO A 184 GLY A 191 1 8 HELIX 6 6 SER A 234 GLY A 241 1 8 HELIX 7 7 SER A 248 HIS A 253 5 6 HELIX 8 8 THR A 345 GLY A 351 1 7 HELIX 9 9 ASN A 435 LYS A 446 1 12 HELIX 10 10 VAL A 480 THR A 487 1 8 HELIX 11 11 ASP A 512 LYS A 518 5 7 HELIX 12 12 THR A 522 GLY A 532 1 11 HELIX 13 13 ASP A 555 ASN A 570 1 16 HELIX 14 14 ASN A 573 VAL A 577 5 5 HELIX 15 15 ASP A 608 HIS A 616 1 9 HELIX 16 16 ASP A 632 ILE A 638 1 7 HELIX 17 17 GLU A 704 THR A 706 5 3 HELIX 18 18 TYR A 732 ILE A 734 5 3 SHEET 1 A 6 PRO A 32 SER A 37 0 SHEET 2 A 6 LEU A 20 PHE A 24 -1 N GLY A 21 O THR A 36 SHEET 3 A 6 SER A 62 LYS A 70 -1 O SER A 62 N PHE A 24 SHEET 4 A 6 LEU A 113 GLN A 121 -1 O ILE A 116 N GLY A 67 SHEET 5 A 6 VAL A 87 VAL A 91 -1 N THR A 88 O GLN A 119 SHEET 6 A 6 GLN A 94 ILE A 97 -1 O GLN A 94 N VAL A 91 SHEET 1 B 4 PRO A 32 SER A 37 0 SHEET 2 B 4 LEU A 20 PHE A 24 -1 N GLY A 21 O THR A 36 SHEET 3 B 4 SER A 62 LYS A 70 -1 O SER A 62 N PHE A 24 SHEET 4 B 4 LEU A 151 GLN A 152 -1 O GLN A 152 N PHE A 68 SHEET 1 C 4 LYS A 105 LEU A 108 0 SHEET 2 C 4 ASP A 75 THR A 81 -1 N TYR A 77 O ILE A 106 SHEET 3 C 4 LEU A 134 THR A 137 -1 O TYR A 135 N ALA A 80 SHEET 4 C 4 LYS A 143 VAL A 145 -1 O GLU A 144 N FTR A 136 SHEET 1 D 2 TYR A 192 ASP A 195 0 SHEET 2 D 2 PHE A 202 PRO A 205 -1 O SER A 204 N THR A 193 SHEET 1 E 8 GLN A 389 ILE A 394 0 SHEET 2 E 8 THR A 381 LEU A 385 -1 N THR A 381 O ILE A 394 SHEET 3 E 8 GLN A 447 THR A 452 -1 O ARG A 449 N VAL A 384 SHEET 4 E 8 ASN A 328 ILE A 334 -1 N VAL A 332 O LEU A 448 SHEET 5 E 8 ILE A 289 ARG A 297 -1 N SER A 294 O ALA A 333 SHEET 6 E 8 VAL A 262 LYS A 273 -1 N LEU A 271 O ILE A 289 SHEET 7 E 8 ALA A 358 ASN A 368 -1 O ARG A 365 N ASP A 265 SHEET 8 E 8 ILE A 419 ALA A 420 -1 O ILE A 419 N ILE A 364 SHEET 1 F 3 ASN A 409 TYR A 411 0 SHEET 2 F 3 ALA A 358 ASN A 368 -1 N TYR A 366 O TYR A 411 SHEET 3 F 3 ILE A 432 MET A 434 -1 O MET A 434 N ALA A 358 SHEET 1 G 2 ASN A 458 TYR A 462 0 SHEET 2 G 2 VAL A 469 ASN A 476 -1 O ASP A 472 N ILE A 459 SHEET 1 H 4 VAL A 501 ALA A 506 0 SHEET 2 H 4 THR A 488 PHE A 493 -1 N ALA A 489 O ILE A 505 SHEET 3 H 4 ASN A 588 ASP A 593 1 O ILE A 591 N ILE A 492 SHEET 4 H 4 PHE A 550 PHE A 554 -1 N ASN A 553 O LEU A 590 SHEET 1 I 2 GLN A 541 TYR A 542 0 SHEET 2 I 2 LYS A 545 ASP A 546 -1 O LYS A 545 N TYR A 542 SHEET 1 J 2 PHE A 596 TYR A 598 0 SHEET 2 J 2 ALA A 604 ALA A 607 -1 O VAL A 605 N HIS A 597 SHEET 1 K 4 VAL A 619 SER A 623 0 SHEET 2 K 4 GLY A 626 LEU A 629 -1 O LEU A 628 N ILE A 620 SHEET 3 K 4 THR A 674 ASP A 677 -1 O THR A 674 N LEU A 629 SHEET 4 K 4 SER A 666 LEU A 668 -1 N SER A 667 O PHE A 675 SHEET 1 L 4 LYS A 653 VAL A 655 0 SHEET 2 L 4 LEU A 639 GLU A 647 -1 N ILE A 646 O GLU A 654 SHEET 3 L 4 LYS A 695 THR A 702 -1 O ASN A 697 N GLU A 645 SHEET 4 L 4 ILE A 724 LYS A 730 -1 O ILE A 724 N ALA A 700 LINK C ILE A 64 N FTR A 65 1555 1555 1.34 LINK C FTR A 65 N SER A 66 1555 1555 1.32 LINK C MET A 89 N FTR A 90 1555 1555 1.33 LINK C FTR A 90 N VAL A 91 1555 1555 1.33 LINK C TYR A 135 N FTR A 136 1555 1555 1.33 LINK C FTR A 136 N THR A 137 1555 1555 1.32 LINK C LYS A 225 N FTR A 226 1555 1555 1.33 LINK C FTR A 226 N SER A 227 1555 1555 1.34 LINK C THR A 345 N FTR A 346 1555 1555 1.32 LINK C FTR A 346 N ALA A 347 1555 1555 1.33 LINK C ASN A 476 N FTR A 477 1555 1555 1.34 LINK C FTR A 477 N SER A 478 1555 1555 1.33 LINK OD1 ASP A 177 CA CA A 802 1555 1555 2.29 LINK OD2 ASP A 179 CA CA A 801 1555 1555 2.29 LINK OD1 ASP A 179 CA CA A 802 1555 1555 2.32 LINK OD2 ASP A 181 CA CA A 801 1555 1555 2.41 LINK OD1 ASP A 181 CA CA A 802 1555 1555 2.37 LINK O ILE A 183 CA CA A 802 1555 1555 2.35 LINK OE1 GLU A 188 CA CA A 801 1555 1555 2.34 LINK OE2 GLU A 188 CA CA A 801 1555 1555 2.89 LINK OE2 GLU A 188 CA CA A 802 1555 1555 2.33 LINK O SER A 222 CA CA A 801 1555 1555 2.36 LINK O LYS A 225 CA CA A 801 1555 1555 2.40 LINK OD2 ASP A 235 CA CA A 801 1555 1555 2.37 LINK CA CA A 802 O HOH A 904 1555 1555 2.29 CISPEP 1 TYR A 411 PRO A 412 0 -5.47 SITE 1 AC1 6 ASP A 179 ASP A 181 GLU A 188 SER A 222 SITE 2 AC1 6 LYS A 225 ASP A 235 SITE 1 AC2 6 ASP A 177 ASP A 179 ASP A 181 ILE A 183 SITE 2 AC2 6 GLU A 188 HOH A 904 CRYST1 71.298 93.954 117.727 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008494 0.00000