HEADER OXIDOREDUCTASE 22-OCT-13 4NAO TITLE CRYSTAL STRUCTURE OF EASH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLAVICEPS PURPUREA; SOURCE 3 ORGANISM_COMMON: ERGOT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5111; SOURCE 5 STRAIN: D11; SOURCE 6 GENE: EASH1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE80 KEYWDS JELLY-ROLL FOLD, FE BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JANKE,J.HAVEMANN,D.VOGEL,U.KELLER,B.LOLL REVDAT 3 28-FEB-24 4NAO 1 REMARK SEQADV LINK REVDAT 2 05-FEB-14 4NAO 1 JRNL REVDAT 1 15-JAN-14 4NAO 0 JRNL AUTH J.HAVEMANN,D.VOGEL,B.LOLL,U.KELLER JRNL TITL CYCLOLIZATION OF D-LYSERGIC ACID ALKALOID PEPTIDES. JRNL REF CHEM.BIOL. V. 21 146 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24361048 JRNL DOI 10.1016/J.CHEMBIOL.2013.11.008 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 76981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3347 - 5.0024 1.00 2624 131 0.1932 0.1934 REMARK 3 2 5.0024 - 3.9721 1.00 2600 140 0.1334 0.1739 REMARK 3 3 3.9721 - 3.4705 1.00 2635 143 0.1429 0.1592 REMARK 3 4 3.4705 - 3.1534 1.00 2596 141 0.1549 0.1632 REMARK 3 5 3.1534 - 2.9274 1.00 2621 137 0.1640 0.1879 REMARK 3 6 2.9274 - 2.7549 1.00 2624 141 0.1590 0.1929 REMARK 3 7 2.7549 - 2.6170 1.00 2608 140 0.1533 0.1881 REMARK 3 8 2.6170 - 2.5031 1.00 2626 141 0.1567 0.1468 REMARK 3 9 2.5031 - 2.4068 1.00 2589 134 0.1527 0.1977 REMARK 3 10 2.4068 - 2.3237 1.00 2627 136 0.1538 0.1918 REMARK 3 11 2.3237 - 2.2511 1.00 2627 145 0.1481 0.1855 REMARK 3 12 2.2511 - 2.1867 1.00 2605 139 0.1469 0.1686 REMARK 3 13 2.1867 - 2.1292 1.00 2615 140 0.1470 0.1688 REMARK 3 14 2.1292 - 2.0772 1.00 2598 138 0.1481 0.2138 REMARK 3 15 2.0772 - 2.0300 1.00 2637 136 0.1444 0.1822 REMARK 3 16 2.0300 - 1.9868 1.00 2600 137 0.1419 0.1448 REMARK 3 17 1.9868 - 1.9471 1.00 2638 139 0.1468 0.1674 REMARK 3 18 1.9471 - 1.9103 1.00 2630 136 0.1526 0.2217 REMARK 3 19 1.9103 - 1.8762 1.00 2620 140 0.1614 0.2067 REMARK 3 20 1.8762 - 1.8444 1.00 2599 137 0.1682 0.1881 REMARK 3 21 1.8444 - 1.8147 1.00 2640 140 0.1700 0.1748 REMARK 3 22 1.8147 - 1.7867 1.00 2609 136 0.1773 0.2060 REMARK 3 23 1.7867 - 1.7605 1.00 2574 135 0.1708 0.1886 REMARK 3 24 1.7605 - 1.7357 1.00 2650 135 0.1804 0.1904 REMARK 3 25 1.7357 - 1.7122 1.00 2600 132 0.1878 0.2348 REMARK 3 26 1.7122 - 1.6900 1.00 2604 142 0.1873 0.2423 REMARK 3 27 1.6900 - 1.6689 0.99 2620 137 0.2039 0.2518 REMARK 3 28 1.6689 - 1.6488 0.97 2506 131 0.2214 0.2173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2406 REMARK 3 ANGLE : 1.469 3268 REMARK 3 CHIRALITY : 0.107 355 REMARK 3 PLANARITY : 0.007 432 REMARK 3 DIHEDRAL : 14.989 956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 10:36) REMARK 3 ORIGIN FOR THE GROUP (A): 87.0414 33.4697 36.2698 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.2194 REMARK 3 T33: 0.1808 T12: -0.0325 REMARK 3 T13: -0.0167 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.0599 L22: 3.7340 REMARK 3 L33: 3.5769 L12: 0.3204 REMARK 3 L13: -0.0463 L23: 1.0097 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.0013 S13: 0.0127 REMARK 3 S21: 0.1567 S22: -0.0038 S23: -0.5751 REMARK 3 S31: -0.1277 S32: 0.6826 S33: -0.1017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 37:146) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4484 32.3468 37.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1080 REMARK 3 T33: 0.1334 T12: -0.0339 REMARK 3 T13: 0.0219 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.2657 L22: 1.5130 REMARK 3 L33: 2.0540 L12: 0.0885 REMARK 3 L13: 0.2206 L23: 0.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.1412 S13: 0.0431 REMARK 3 S21: 0.2014 S22: -0.0565 S23: 0.1662 REMARK 3 S31: 0.1245 S32: -0.1942 S33: 0.0346 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 147:273) REMARK 3 ORIGIN FOR THE GROUP (A): 73.1476 28.4243 35.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1083 REMARK 3 T33: 0.1307 T12: -0.0156 REMARK 3 T13: 0.0204 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.9241 L22: 1.7223 REMARK 3 L33: 1.7071 L12: 0.1460 REMARK 3 L13: 0.1436 L23: 0.7116 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.1164 S13: -0.0401 REMARK 3 S21: 0.2034 S22: 0.0130 S23: -0.0670 REMARK 3 S31: 0.1635 S32: 0.1219 S33: -0.0343 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 274:309) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4399 43.7475 16.7815 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.1525 REMARK 3 T33: 0.2578 T12: 0.0022 REMARK 3 T13: -0.0348 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 2.1553 L22: 5.8287 REMARK 3 L33: 3.6794 L12: -0.2969 REMARK 3 L13: -0.0175 L23: 2.7026 REMARK 3 S TENSOR REMARK 3 S11: -0.2029 S12: -0.0614 S13: 0.3793 REMARK 3 S21: 0.0128 S22: 0.0146 S23: 0.3261 REMARK 3 S31: -0.5758 S32: 0.0284 S33: 0.1509 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000082963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.24908 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG 600, 125 MM NA3CITRATE REMARK 280 AT PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.59450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.65200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.65200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.39175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.65200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.65200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.79725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.65200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.39175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.65200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.79725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.59450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -Y+1,-X+1,-Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 91.30400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 91.30400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.59450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 651 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 HIS A 5 REMARK 465 GLN A 6 REMARK 465 GLU A 7 REMARK 465 HIS A 8 REMARK 465 THR A 9 REMARK 465 LEU A 62 REMARK 465 LYS A 63 REMARK 465 PHE A 64 REMARK 465 LYS A 65 REMARK 465 ALA A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 LYS A 69 REMARK 465 ASP A 70 REMARK 465 ASP A 71 REMARK 465 PRO A 72 REMARK 465 HIS A 73 REMARK 465 PRO A 275 REMARK 465 GLY A 276 REMARK 465 THR A 277 REMARK 465 VAL A 278 REMARK 465 GLU A 279 REMARK 465 VAL A 280 REMARK 465 ALA A 310 REMARK 465 THR A 311 REMARK 465 ASP A 312 REMARK 465 ALA A 313 REMARK 465 VAL A 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 617 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 93 -1.45 -140.77 REMARK 500 TRP A 285 66.57 63.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 28 O REMARK 620 2 HOH A 533 O 118.0 REMARK 620 3 HOH A 610 O 125.6 115.3 REMARK 620 4 HOH A 615 O 69.1 97.4 94.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 141 NE2 REMARK 620 2 ASP A 143 OD1 93.2 REMARK 620 3 HIS A 217 NE2 91.1 86.2 REMARK 620 4 AKG A 402 O5 89.2 171.4 102.0 REMARK 620 5 AKG A 402 O1 74.8 93.7 165.9 78.9 REMARK 620 6 HOH A 518 O 179.1 87.4 89.6 90.2 104.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OPW RELATED DB: PDB REMARK 900 RELATED ID: 2A1X RELATED DB: PDB DBREF 4NAO A 1 314 UNP G8GV69 G8GV69_CLAPU 1 314 SEQADV 4NAO MET A -11 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO ARG A -10 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO GLY A -9 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO SER A -8 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -7 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -6 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -5 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -4 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -3 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO HIS A -2 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO GLY A -1 UNP G8GV69 EXPRESSION TAG SEQADV 4NAO SER A 0 UNP G8GV69 EXPRESSION TAG SEQRES 1 A 326 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 326 THR SER GLN HIS GLN GLU HIS THR GLY THR LYS ARG PHE SEQRES 3 A 326 SER ILE GLN SER ASP PRO VAL GLU ILE HIS ARG ALA ILE SEQRES 4 A 326 VAL GLU ASP GLY VAL ALA ILE ILE GLU GLY PHE LEU THR SEQRES 5 A 326 PRO GLU GLN VAL GLN LYS LEU ASN LYS ASP VAL ASP ALA SEQRES 6 A 326 PRO LEU LYS ALA ASP ARG GLU GLN LEU LYS PHE LYS ALA SEQRES 7 A 326 ASP LYS LYS ASP ASP PRO HIS PHE TRP LEU ALA ASP PHE SEQRES 8 A 326 ILE PRO ASP HIS VAL ALA ARG VAL HIS ASN LEU VAL ASP SEQRES 9 A 326 PHE SER HIS CYS PHE ARG HIS GLU ILE LEU ASN HIS GLU SEQRES 10 A 326 LEU LEU HIS LYS ILE CYS ARG LEU THR PHE GLU GLU SER SEQRES 11 A 326 GLY ASP TYR TRP LEU GLY TYR GLY ALA VAL ILE GLU ASN SEQRES 12 A 326 GLY PRO GLY THR THR GLU GLN LYS TRP HIS ARG ASP GLN SEQRES 13 A 326 PRO ARG TYR PRO LEU VAL LYS GLU GLY PRO ASP ALA PRO SEQRES 14 A 326 GLU GLY MET LEU ASN PHE PHE THR ALA LEU THR ASP PHE SEQRES 15 A 326 ASP ALA GLU THR GLY LYS THR GLN TYR ILE LEU GLY SER SEQRES 16 A 326 ASN LYS ARG VAL GLU LEU GLY GLU PRO ASP ALA ASP HIS SEQRES 17 A 326 PRO ILE GLU TYR VAL GLY LEU LYS PRO GLY ASP THR THR SEQRES 18 A 326 ILE VAL SER GLY LYS ILE THR HIS ARG GLY SER ASP ASN SEQRES 19 A 326 ARG SER ASP LYS MET ARG ARG ALA MET PRO ILE MET ILE SEQRES 20 A 326 ILE PRO SER ILE LEU THR PRO PHE ASP ALA THR CYS HIS SEQRES 21 A 326 LEU SER ARG GLU LEU VAL GLU THR MET THR PRO LEU ALA SEQRES 22 A 326 GLN LYS MET ILE CYS ARG ARG SER VAL MET ILE PRO ALA SEQRES 23 A 326 PRO GLY THR VAL GLU VAL LYS THR GLY ILE TRP CYS VAL SEQRES 24 A 326 ASN MET ARG GLU ALA GLY GLU GLN ILE GLY LEU LYS SER SEQRES 25 A 326 ASN GLN ARG ALA LYS GLU ASP ALA GLU ALA THR ASP ALA SEQRES 26 A 326 VAL HET P6G A 401 10 HET AKG A 402 10 HET NA A 403 1 HET FE2 A 404 1 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM AKG 2-OXOGLUTARIC ACID HETNAM NA SODIUM ION HETNAM FE2 FE (II) ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 P6G C12 H26 O7 FORMUL 3 AKG C5 H6 O5 FORMUL 4 NA NA 1+ FORMUL 5 FE2 FE 2+ FORMUL 6 HOH *189(H2 O) HELIX 1 1 ASP A 19 GLY A 31 1 13 HELIX 2 2 THR A 40 GLU A 60 1 21 HELIX 3 3 TRP A 75 ILE A 80 5 6 HELIX 4 4 ASN A 89 PHE A 93 5 5 HELIX 5 5 SER A 94 GLU A 100 1 7 HELIX 6 6 ILE A 101 ASN A 103 5 3 HELIX 7 7 HIS A 104 PHE A 115 1 12 HELIX 8 8 GLY A 182 ARG A 186 5 5 HELIX 9 9 SER A 250 THR A 256 1 7 HELIX 10 10 THR A 258 ILE A 265 1 8 HELIX 11 11 ALA A 292 ILE A 296 1 5 HELIX 12 12 ALA A 304 ALA A 308 5 5 SHEET 1 A 7 ARG A 13 SER A 15 0 SHEET 2 A 7 VAL A 32 GLU A 36 1 O ILE A 34 N PHE A 14 SHEET 3 A 7 THR A 208 SER A 212 -1 O ILE A 210 N ALA A 33 SHEET 4 A 7 LEU A 161 ALA A 166 -1 N ASN A 162 O VAL A 211 SHEET 5 A 7 ARG A 228 PRO A 237 -1 O MET A 231 N THR A 165 SHEET 6 A 7 VAL A 128 ASN A 131 -1 N ASN A 131 O ARG A 228 SHEET 7 A 7 VAL A 84 VAL A 87 -1 N ALA A 85 O GLU A 130 SHEET 1 B 6 ARG A 13 SER A 15 0 SHEET 2 B 6 VAL A 32 GLU A 36 1 O ILE A 34 N PHE A 14 SHEET 3 B 6 THR A 208 SER A 212 -1 O ILE A 210 N ALA A 33 SHEET 4 B 6 LEU A 161 ALA A 166 -1 N ASN A 162 O VAL A 211 SHEET 5 B 6 ARG A 228 PRO A 237 -1 O MET A 231 N THR A 165 SHEET 6 B 6 TYR A 121 GLY A 126 -1 N TYR A 125 O MET A 234 SHEET 1 C 3 ILE A 198 VAL A 201 0 SHEET 2 C 3 THR A 177 ILE A 180 -1 N TYR A 179 O GLU A 199 SHEET 3 C 3 HIS A 217 ARG A 218 -1 O ARG A 218 N GLN A 178 SHEET 1 D 2 VAL A 270 ILE A 272 0 SHEET 2 D 2 THR A 282 ILE A 284 -1 O THR A 282 N ILE A 272 SHEET 1 E 2 CYS A 286 VAL A 287 0 SHEET 2 E 2 ARG A 290 GLU A 291 -1 O ARG A 290 N VAL A 287 LINK O VAL A 28 NA NA A 403 1555 1555 2.38 LINK NE2 HIS A 141 FE FE2 A 404 1555 1555 2.56 LINK OD1 ASP A 143 FE FE2 A 404 1555 1555 2.23 LINK NE2 HIS A 217 FE FE2 A 404 1555 1555 2.17 LINK O5 AKG A 402 FE FE2 A 404 1555 1555 2.24 LINK O1 AKG A 402 FE FE2 A 404 1555 1555 2.42 LINK NA NA A 403 O HOH A 533 1555 1555 2.30 LINK NA NA A 403 O HOH A 610 1555 1555 2.45 LINK NA NA A 403 O HOH A 615 1555 1555 2.41 LINK FE FE2 A 404 O HOH A 518 1555 1555 2.36 SITE 1 AC1 3 PRO A 259 ARG A 268 GLU A 294 SITE 1 AC2 10 GLN A 138 HIS A 141 ASP A 143 PHE A 164 SITE 2 AC2 10 THR A 177 HIS A 217 GLY A 219 ARG A 228 SITE 3 AC2 10 FE2 A 404 HOH A 607 SITE 1 AC3 5 VAL A 28 GLN A 45 HOH A 533 HOH A 610 SITE 2 AC3 5 HOH A 615 SITE 1 AC4 5 HIS A 141 ASP A 143 HIS A 217 AKG A 402 SITE 2 AC4 5 HOH A 518 CRYST1 91.304 91.304 79.189 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012628 0.00000