HEADER SIGNALING PROTEIN, ELECTRON TRANSPORT 23-OCT-13 4NC3 TITLE CRYSTAL STRUCTURE OF THE 5-HT2B RECEPTOR SOLVED USING SERIAL TITLE 2 FEMTOSECOND CRYSTALLOGRAPHY IN LIPIDIC CUBIC PHASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA PROTEIN OF HUMAN 5-HYDROXYTRYPTAMINE RECEPTOR 2B COMPND 3 AND E. COLI SOLUBLE CYTOCHROME B562; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: BRIL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: HTR2B, CYBC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS SERIAL FEMTOSECOND CRYSTALLOGRAPHY, HUMAN 5HT2B RECEPTOR, ERGOTAMINE, KEYWDS 2 NOVEL PROTEIN ENGINEERING, GPCR NETWORK, MEMBRANE PROTEIN, LIPIDIC KEYWDS 3 CUBIC PHASE, PSI-BIOLOGY, FREE ELECTRON LASER, STRUCTURAL GENOMICS, KEYWDS 4 GPCR, MEMBRANE, SIGNALING PROTEIN, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,D.WACKER,C.GATI,G.W.HAN,D.JAMES,D.WANG,G.NELSON,U.WEIERSTALL, AUTHOR 2 V.KATRITCH,A.BARTY,N.A.ZATSEPIN,D.LI,M.MESSERSCHMIDT,S.BOUTET, AUTHOR 3 G.J.WILLIAMS,J.E.KOGLIN,M.M.SEIBERT,C.WANG,S.T.A.SHAH,S.BASU, AUTHOR 4 R.FROMME,C.KUPITZ,K.N.RENDEK,I.GROTJOHANN,P.FROMME,R.A.KIRIAN, AUTHOR 5 K.R.BEYERLEIN,T.A.WHITE,H.N.CHAPMAN,M.CAFFREY,J.C.H.SPENCE, AUTHOR 6 R.C.STEVENS,V.CHEREZOV,GPCR NETWORK (GPCR) REVDAT 7 30-OCT-24 4NC3 1 REMARK REVDAT 6 20-SEP-23 4NC3 1 REMARK REVDAT 5 16-AUG-23 4NC3 1 REMARK SEQADV LINK REVDAT 4 14-FEB-18 4NC3 1 REMARK REVDAT 3 07-JUN-17 4NC3 1 COMPND SOURCE REMARK REVDAT 2 22-JAN-14 4NC3 1 JRNL REVDAT 1 18-DEC-13 4NC3 0 JRNL AUTH W.LIU,D.WACKER,C.GATI,G.W.HAN,D.JAMES,D.WANG,G.NELSON, JRNL AUTH 2 U.WEIERSTALL,V.KATRITCH,A.BARTY,N.A.ZATSEPIN,D.LI, JRNL AUTH 3 M.MESSERSCHMIDT,S.BOUTET,G.J.WILLIAMS,J.E.KOGLIN, JRNL AUTH 4 M.M.SEIBERT,C.WANG,S.T.SHAH,S.BASU,R.FROMME,C.KUPITZ, JRNL AUTH 5 K.N.RENDEK,I.GROTJOHANN,P.FROMME,R.A.KIRIAN,K.R.BEYERLEIN, JRNL AUTH 6 T.A.WHITE,H.N.CHAPMAN,M.CAFFREY,J.C.SPENCE,R.C.STEVENS, JRNL AUTH 7 V.CHEREZOV JRNL TITL SERIAL FEMTOSECOND CRYSTALLOGRAPHY OF G PROTEIN-COUPLED JRNL TITL 2 RECEPTORS. JRNL REF SCIENCE V. 342 1521 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 24357322 JRNL DOI 10.1126/SCIENCE.1244142 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6839 - 5.0836 1.00 2667 136 0.2491 0.2677 REMARK 3 2 5.0836 - 4.0370 1.00 2539 133 0.1784 0.2325 REMARK 3 3 4.0370 - 3.5272 1.00 2534 143 0.2153 0.2685 REMARK 3 4 3.5272 - 3.2050 1.00 2512 129 0.2629 0.3548 REMARK 3 5 3.2050 - 2.9754 1.00 2470 136 0.3072 0.3388 REMARK 3 6 2.9754 - 2.8001 1.00 2489 137 0.3409 0.3841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3179 REMARK 3 ANGLE : 0.601 4299 REMARK 3 CHIRALITY : 0.032 506 REMARK 3 PLANARITY : 0.002 499 REMARK 3 DIHEDRAL : 15.414 1157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 48:400) OR CHAIN 'A' AND REMARK 3 (RESSEQ 1201:1201) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7680 -18.1630 -2.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.7326 T22: 0.6606 REMARK 3 T33: 0.6925 T12: 0.0302 REMARK 3 T13: -0.0022 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 2.2400 L22: 2.0754 REMARK 3 L33: 1.2817 L12: -0.0261 REMARK 3 L13: 0.7117 L23: 0.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.0881 S13: -0.1327 REMARK 3 S21: -0.0432 S22: -0.0360 S23: -0.1061 REMARK 3 S31: 0.2515 S32: 0.0323 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1001:1106) REMARK 3 ORIGIN FOR THE GROUP (A): -48.3730 -6.3246 -45.2049 REMARK 3 T TENSOR REMARK 3 T11: 1.0264 T22: 1.9875 REMARK 3 T33: 1.1809 T12: 0.0854 REMARK 3 T13: -0.1212 T23: 0.1200 REMARK 3 L TENSOR REMARK 3 L11: 0.1861 L22: 0.2899 REMARK 3 L33: 0.2845 L12: 0.1367 REMARK 3 L13: -0.1324 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.3702 S12: -0.0559 S13: -0.0530 REMARK 3 S21: -0.0634 S22: -0.2081 S23: -0.3985 REMARK 3 S31: 0.1855 S32: -0.7574 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : K-B MIRRORS REMARK 200 OPTICS : K-B MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CORNELL-SLAC PIXEL ARRAY REMARK 200 DETECTOR (CSPAD) REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1150. REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4IB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS/HCL PH8.0, 20-80MM MGCL2 REMARK 280 AND 30% (V/V) PEG400 , LIPIDIC CUBIC PHASE (LCP), TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.25000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.25000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 26 REMARK 465 TYR A 27 REMARK 465 LYS A 28 REMARK 465 ASP A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 ASP A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 ILE A 39 REMARK 465 PRO A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 MET A 43 REMARK 465 LYS A 44 REMARK 465 GLN A 45 REMARK 465 ILE A 46 REMARK 465 VAL A 47 REMARK 465 ASP A 198 REMARK 465 ALA A 1036 REMARK 465 ALA A 1037 REMARK 465 LEU A 1038 REMARK 465 ASP A 1039 REMARK 465 ALA A 1040 REMARK 465 GLN A 1041 REMARK 465 LYS A 1042 REMARK 465 ALA A 1043 REMARK 465 THR A 1044 REMARK 465 PRO A 1045 REMARK 465 PRO A 1046 REMARK 465 LYS A 1047 REMARK 465 LEU A 1048 REMARK 465 GLU A 1049 REMARK 465 ASP A 1050 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 SER A 1055 REMARK 465 PRO A 1056 REMARK 465 GLU A 1057 REMARK 465 MET A 1058 REMARK 465 ALA A 401 REMARK 465 THR A 402 REMARK 465 LYS A 403 REMARK 465 SER A 404 REMARK 465 VAL A 405 REMARK 465 GLY A 406 REMARK 465 ARG A 407 REMARK 465 PRO A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 VAL A 411 REMARK 465 LEU A 412 REMARK 465 PHE A 413 REMARK 465 GLN A 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 53 CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 MET A 120 CG SD CE REMARK 470 LEU A 125 CD1 CD2 REMARK 470 ARG A 153 CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 TYR A 166 CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 197 OG1 CG2 REMARK 470 ILE A 205 CG1 CG2 CD1 REMARK 470 LYS A 211 CD CE NZ REMARK 470 GLU A1008 CG CD OE1 OE2 REMARK 470 VAL A1026 CG1 CG2 REMARK 470 LYS A1027 CG CD CE NZ REMARK 470 LYS A1059 CG CD CE NZ REMARK 470 ARG A1062 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1065 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1076 CG CD1 CD2 REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 ARG A 321 CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ARG A 400 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 64 -57.68 -144.34 REMARK 500 GLU A 118 -159.57 57.60 REMARK 500 ASP A 200 -87.35 -118.31 REMARK 500 ASN A 204 58.43 -104.54 REMARK 500 PHE A 226 -54.34 -124.18 REMARK 500 CYS A 397 63.86 61.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1204 REMARK 610 OLC A 1205 REMARK 610 OLC A 1208 REMARK 610 OLA A 1210 REMARK 610 OLA A 1212 REMARK 610 DGA A 1213 REMARK 610 DGA A 1214 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERM A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGA A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGA A 1214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IB4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF 5-HT2B-BRIL IN COMPLEX REMARK 900 WITH ERGOTAMINE REMARK 900 RELATED ID: GPCR-4 RELATED DB: TARGETTRACK DBREF 4NC3 A 36 248 UNP P41595 5HT2B_HUMAN 36 248 DBREF 4NC3 A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 4NC3 A 314 405 UNP P41595 5HT2B_HUMAN 314 405 SEQADV 4NC3 ASP A 26 UNP P41595 EXPRESSION TAG SEQADV 4NC3 TYR A 27 UNP P41595 EXPRESSION TAG SEQADV 4NC3 LYS A 28 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ASP A 29 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ASP A 30 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ASP A 31 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ASP A 32 UNP P41595 EXPRESSION TAG SEQADV 4NC3 GLY A 33 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ALA A 34 UNP P41595 EXPRESSION TAG SEQADV 4NC3 PRO A 35 UNP P41595 EXPRESSION TAG SEQADV 4NC3 TRP A 144 UNP P41595 MET 144 ENGINEERED MUTATION SEQADV 4NC3 TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 4NC3 ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 4NC3 LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQADV 4NC3 GLY A 406 UNP P41595 EXPRESSION TAG SEQADV 4NC3 ARG A 407 UNP P41595 EXPRESSION TAG SEQADV 4NC3 PRO A 408 UNP P41595 EXPRESSION TAG SEQADV 4NC3 LEU A 409 UNP P41595 EXPRESSION TAG SEQADV 4NC3 GLU A 410 UNP P41595 EXPRESSION TAG SEQADV 4NC3 VAL A 411 UNP P41595 EXPRESSION TAG SEQADV 4NC3 LEU A 412 UNP P41595 EXPRESSION TAG SEQADV 4NC3 PHE A 413 UNP P41595 EXPRESSION TAG SEQADV 4NC3 GLN A 414 UNP P41595 EXPRESSION TAG SEQRES 1 A 430 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO THR GLU SER SEQRES 2 A 430 ILE PRO GLU GLU MET LYS GLN ILE VAL GLU GLU GLN GLY SEQRES 3 A 430 ASN LYS LEU HIS TRP ALA ALA LEU LEU ILE LEU MET VAL SEQRES 4 A 430 ILE ILE PRO THR ILE GLY GLY ASN THR LEU VAL ILE LEU SEQRES 5 A 430 ALA VAL SER LEU GLU LYS LYS LEU GLN TYR ALA THR ASN SEQRES 6 A 430 TYR PHE LEU MET SER LEU ALA VAL ALA ASP LEU LEU VAL SEQRES 7 A 430 GLY LEU PHE VAL MET PRO ILE ALA LEU LEU THR ILE MET SEQRES 8 A 430 PHE GLU ALA MET TRP PRO LEU PRO LEU VAL LEU CYS PRO SEQRES 9 A 430 ALA TRP LEU PHE LEU ASP VAL LEU PHE SER THR ALA SER SEQRES 10 A 430 ILE TRP HIS LEU CYS ALA ILE SER VAL ASP ARG TYR ILE SEQRES 11 A 430 ALA ILE LYS LYS PRO ILE GLN ALA ASN GLN TYR ASN SER SEQRES 12 A 430 ARG ALA THR ALA PHE ILE LYS ILE THR VAL VAL TRP LEU SEQRES 13 A 430 ILE SER ILE GLY ILE ALA ILE PRO VAL PRO ILE LYS GLY SEQRES 14 A 430 ILE GLU THR ASP VAL ASP ASN PRO ASN ASN ILE THR CYS SEQRES 15 A 430 VAL LEU THR LYS GLU ARG PHE GLY ASP PHE MET LEU PHE SEQRES 16 A 430 GLY SER LEU ALA ALA PHE PHE THR PRO LEU ALA ILE MET SEQRES 17 A 430 ILE VAL THR TYR PHE LEU THR ILE HIS ALA LEU GLN LYS SEQRES 18 A 430 LYS ALA ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN SEQRES 19 A 430 ASP ASN LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA SEQRES 20 A 430 GLN VAL LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA SEQRES 21 A 430 LEU ASP ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP SEQRES 22 A 430 LYS SER PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS SEQRES 23 A 430 GLY PHE ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU SEQRES 24 A 430 LYS LEU ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA SEQRES 25 A 430 ALA ALA GLU GLN LEU LYS THR THR ARG ASN ALA TYR ILE SEQRES 26 A 430 GLN LYS TYR LEU GLN THR ILE SER ASN GLU GLN ARG ALA SEQRES 27 A 430 SER LYS VAL LEU GLY ILE VAL PHE PHE LEU PHE LEU LEU SEQRES 28 A 430 MET TRP CYS PRO PHE PHE ILE THR ASN ILE THR LEU VAL SEQRES 29 A 430 LEU CYS ASP SER CYS ASN GLN THR THR LEU GLN MET LEU SEQRES 30 A 430 LEU GLU ILE PHE VAL TRP ILE GLY TYR VAL SER SER GLY SEQRES 31 A 430 VAL ASN PRO LEU VAL TYR THR LEU PHE ASN LYS THR PHE SEQRES 32 A 430 ARG ASP ALA PHE GLY ARG TYR ILE THR CYS ASN TYR ARG SEQRES 33 A 430 ALA THR LYS SER VAL GLY ARG PRO LEU GLU VAL LEU PHE SEQRES 34 A 430 GLN HET PLM A1201 17 HET ERM A1202 43 HET CLR A1203 28 HET OLC A1204 19 HET OLC A1205 16 HET PEG A1206 7 HET OLC A1207 25 HET OLC A1208 19 HET TRS A1209 8 HET OLA A1210 10 HET OLA A1211 20 HET OLA A1212 19 HET DGA A1213 26 HET DGA A1214 20 HETNAM PLM PALMITIC ACID HETNAM ERM ERGOTAMINE HETNAM CLR CHOLESTEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM OLA OLEIC ACID HETNAM DGA DIACYL GLYCEROL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN TRS TRIS BUFFER FORMUL 2 PLM C16 H32 O2 FORMUL 3 ERM C33 H35 N5 O5 FORMUL 4 CLR C27 H46 O FORMUL 5 OLC 4(C21 H40 O4) FORMUL 7 PEG C4 H10 O3 FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 11 OLA 3(C18 H34 O2) FORMUL 14 DGA 2(C39 H76 O5) FORMUL 16 HOH *7(H2 O) HELIX 1 1 LYS A 53 VAL A 64 1 12 HELIX 2 2 VAL A 64 GLU A 82 1 19 HELIX 3 3 ALA A 88 VAL A 107 1 20 HELIX 4 4 VAL A 107 PHE A 117 1 11 HELIX 5 5 VAL A 126 LYS A 159 1 34 HELIX 6 6 ASN A 164 ILE A 188 1 25 HELIX 7 7 ILE A 188 GLY A 194 1 7 HELIX 8 8 THR A 210 PHE A 226 1 17 HELIX 9 9 PHE A 226 LYS A 1019 1 42 HELIX 10 10 ASN A 1022 LYS A 1032 1 11 HELIX 11 11 ASP A 1060 GLY A 1082 1 23 HELIX 12 12 LYS A 1083 MET A 336 1 47 HELIX 13 13 TRP A 337 CYS A 350 1 14 HELIX 14 14 ASN A 354 VAL A 375 1 22 HELIX 15 15 VAL A 375 LEU A 382 1 8 HELIX 16 16 ASN A 384 THR A 396 1 13 SSBOND 1 CYS A 128 CYS A 207 1555 1555 2.03 SSBOND 2 CYS A 350 CYS A 353 1555 1555 2.03 LINK SG CYS A 397 C1 PLM A1201 1555 1555 1.66 SITE 1 AC1 5 LEU A 62 CYS A 353 ILE A 395 THR A 396 SITE 2 AC1 5 CYS A 397 SITE 1 AC2 12 ASP A 135 SER A 139 THR A 140 VAL A 208 SITE 2 AC2 12 LEU A 209 PHE A 217 MET A 218 ALA A 225 SITE 3 AC2 12 PHE A 340 ASN A 344 GLN A 359 HOH A1302 SITE 1 AC3 5 ILE A 61 ILE A 69 GLY A 70 TYR A 394 SITE 2 AC3 5 TYR A 399 SITE 1 AC4 4 SER A 150 MET A 233 THR A 240 LEU A 326 SITE 1 AC5 1 TYR A 399 SITE 1 AC6 3 TYR A 87 TYR A 380 ASN A 384 SITE 1 AC7 2 LEU A 77 HOH A1305 SITE 1 AC8 4 LYS A 193 ASP A 216 PHE A 217 OLA A1212 SITE 1 AC9 1 ASP A 216 SITE 1 BC1 1 MET A 63 SITE 1 BC2 2 ILE A 174 OLC A1208 SITE 1 BC3 3 LEU A 239 HIS A 242 DGA A1214 SITE 1 BC4 4 HIS A 55 HIS A 242 DGA A1213 HOH A1306 CRYST1 61.500 122.200 168.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005935 0.00000