HEADER NUCLEAR PROTEIN/DNA 24-OCT-13 4NCA TITLE STRUCTURE OF THERMUS THERMOPHILUS ARGONAUTE BOUND TO GUIDE DNA 19-MER TITLE 2 AND TARGET DNA IN THE PRESENCE OF MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGONAUTE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T COMPND 7 P*AP*GP*T)-3'; COMPND 8 CHAIN: C, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'; COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: 5'-D(*AP*CP*AP*AP*CP*C)-3'; COMPND 16 CHAIN: G, H; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: THERMOPHILUS; SOURCE 5 GENE: ARGONAUTE, TT_P0026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES KEYWDS ARGONAUTE, RNA INTERFERENCE, DNA INTERFERENCE, NUCLEAR PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SHENG,H.ZHAO,J.WANG,Y.RAO,Y.WANG REVDAT 6 12-FEB-25 4NCA 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 FORMUL ATOM REVDAT 5 22-MAY-24 4NCA 1 REMARK REVDAT 4 01-FEB-23 4NCA 1 TITLE REMARK LINK REVDAT 3 15-NOV-17 4NCA 1 REMARK REVDAT 2 29-JAN-14 4NCA 1 JRNL REVDAT 1 15-JAN-14 4NCA 0 JRNL AUTH G.SHENG,H.ZHAO,J.WANG,Y.RAO,W.TIAN,D.C.SWARTS, JRNL AUTH 2 J.VAN DER OOST,D.J.PATEL,Y.WANG JRNL TITL STRUCTURE-BASED CLEAVAGE MECHANISM OF THERMUS THERMOPHILUS JRNL TITL 2 ARGONAUTE DNA GUIDE STRAND-MEDIATED DNA TARGET CLEAVAGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 652 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24374628 JRNL DOI 10.1073/PNAS.1321032111 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 73688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1698 - 7.4589 0.99 2815 128 0.1745 0.1890 REMARK 3 2 7.4589 - 5.9238 1.00 2706 128 0.1991 0.2190 REMARK 3 3 5.9238 - 5.1760 1.00 2659 134 0.1917 0.2514 REMARK 3 4 5.1760 - 4.7032 1.00 2653 146 0.1663 0.2154 REMARK 3 5 4.7032 - 4.3663 1.00 2610 141 0.1513 0.2041 REMARK 3 6 4.3663 - 4.1090 1.00 2612 158 0.1567 0.1946 REMARK 3 7 4.1090 - 3.9033 1.00 2579 164 0.1733 0.2192 REMARK 3 8 3.9033 - 3.7335 1.00 2595 145 0.1994 0.2344 REMARK 3 9 3.7335 - 3.5898 1.00 2587 143 0.2125 0.2478 REMARK 3 10 3.5898 - 3.4660 1.00 2598 134 0.1895 0.2434 REMARK 3 11 3.4660 - 3.3576 1.00 2573 143 0.2121 0.2643 REMARK 3 12 3.3576 - 3.2617 1.00 2600 142 0.1889 0.2257 REMARK 3 13 3.2617 - 3.1758 1.00 2593 137 0.1959 0.2503 REMARK 3 14 3.1758 - 3.0983 1.00 2585 137 0.2017 0.2926 REMARK 3 15 3.0983 - 3.0279 1.00 2635 117 0.2141 0.2981 REMARK 3 16 3.0279 - 2.9635 1.00 2564 146 0.2318 0.2727 REMARK 3 17 2.9635 - 2.9042 1.00 2607 140 0.2271 0.2843 REMARK 3 18 2.9042 - 2.8494 1.00 2557 131 0.2330 0.2820 REMARK 3 19 2.8494 - 2.7985 1.00 2604 128 0.2355 0.2969 REMARK 3 20 2.7985 - 2.7511 1.00 2574 145 0.2451 0.2893 REMARK 3 21 2.7511 - 2.7067 1.00 2582 134 0.2503 0.3141 REMARK 3 22 2.7067 - 2.6651 1.00 2575 135 0.2882 0.3793 REMARK 3 23 2.6651 - 2.6259 1.00 2570 127 0.3020 0.3567 REMARK 3 24 2.6259 - 2.5889 1.00 2560 130 0.2775 0.3132 REMARK 3 25 2.5889 - 2.5539 1.00 2584 131 0.2827 0.3331 REMARK 3 26 2.5539 - 2.5208 1.00 2546 144 0.3043 0.2957 REMARK 3 27 2.5208 - 2.4890 0.87 2251 126 0.3407 0.4025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 12425 REMARK 3 ANGLE : 0.906 17184 REMARK 3 CHIRALITY : 0.034 1875 REMARK 3 PLANARITY : 0.004 2002 REMARK 3 DIHEDRAL : 17.289 4709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PDB ENTRY 3F73 REMARK 4 REMARK 4 4NCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.489 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6 M SODIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 306K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.78050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.78050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 HIS B 3 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 ARG B 251 REMARK 465 GLU B 274 REMARK 465 DA C 17 REMARK 465 DT C 18 REMARK 465 DA C 19 REMARK 465 DG C 20 REMARK 465 DT C 21 REMARK 465 DA E 17 REMARK 465 DT E 18 REMARK 465 DA E 19 REMARK 465 DG E 20 REMARK 465 DT E 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 PRO A 218 CG CD REMARK 470 SER A 229 OG REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 PRO A 247 CG CD REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 PRO A 250 CG CD REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 SER A 276 OG REMARK 470 ARG A 482 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 GLN B 84 CG CD OE1 NE2 REMARK 470 SER B 107 OG REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 VAL B 127 CG1 CG2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 SER B 229 OG REMARK 470 GLN B 234 CG CD OE1 NE2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 SER B 276 OG REMARK 470 ARG B 482 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 497 CG OD1 OD2 REMARK 470 GLN B 585 CG CD OE1 NE2 REMARK 470 ARG B 587 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 680 CG CD OE1 OE2 REMARK 470 DT D 10 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DT D 10 MG MG D 101 1.43 REMARK 500 OP3 DT D 10 O3' DC G 6 1.45 REMARK 500 OP1 DA E 3 MG MG E 101 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 1 P DT C 1 OP3 -0.127 REMARK 500 DT D 10 P DT D 10 OP3 -0.122 REMARK 500 DT E 1 P DT E 1 OP3 -0.127 REMARK 500 DT F 10 P DT F 10 OP3 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 247 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO A 438 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO B 143 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 DT C 1 OP1 - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG C 15 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT D 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 1 OP1 - P - OP2 ANGL. DEV. = -12.9 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT E 9 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG E 15 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA G 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA H 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 44.27 -83.17 REMARK 500 LEU A 16 -166.09 -116.36 REMARK 500 ARG A 25 75.19 -116.95 REMARK 500 ARG A 136 -76.54 -101.71 REMARK 500 PRO A 143 94.03 -61.12 REMARK 500 LEU A 205 -113.60 -101.31 REMARK 500 ARG A 206 -162.05 -73.82 REMARK 500 LEU A 207 77.61 -155.93 REMARK 500 GLU A 214 53.56 -140.21 REMARK 500 PRO A 218 66.95 -55.78 REMARK 500 GLU A 237 114.08 -163.15 REMARK 500 ASP A 249 72.93 -166.20 REMARK 500 GLU A 274 -71.81 53.81 REMARK 500 SER A 276 -79.10 -147.00 REMARK 500 GLN A 355 -147.67 -79.94 REMARK 500 PRO A 438 98.74 -68.88 REMARK 500 ARG A 482 50.18 -106.36 REMARK 500 GLN A 585 -140.28 -74.54 REMARK 500 LEU A 596 -86.60 -113.13 REMARK 500 ASN B 12 44.94 -79.40 REMARK 500 LEU B 16 -167.89 -125.06 REMARK 500 TRP B 128 95.85 -69.26 REMARK 500 PRO B 143 -71.04 -21.55 REMARK 500 CYS B 175 -63.03 -108.82 REMARK 500 ASP B 198 -161.02 -118.84 REMARK 500 PRO B 247 66.58 18.97 REMARK 500 ARG B 482 45.69 -109.01 REMARK 500 GLU B 483 -162.12 -124.32 REMARK 500 GLU B 597 -158.27 -157.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 478 OD2 REMARK 620 2 ASP A 546 OD2 92.7 REMARK 620 3 HOH A 802 O 97.4 80.2 REMARK 620 4 HOH A 806 O 93.1 164.9 85.2 REMARK 620 5 DT D 10 OP3 127.1 88.1 134.5 99.5 REMARK 620 6 DC G 6 O3' 160.9 75.0 94.8 102.5 39.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 478 OD1 REMARK 620 2 ASP A 660 OD2 105.2 REMARK 620 3 HOH D 201 O 84.1 92.4 REMARK 620 4 HOH D 202 O 90.2 91.3 173.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 685 O REMARK 620 2 VAL A 685 OXT 59.1 REMARK 620 3 HOH A 801 O 94.4 85.5 REMARK 620 4 DT C 1 OP3 157.0 98.5 88.2 REMARK 620 5 DA C 3 OP1 99.5 157.3 89.0 103.3 REMARK 620 6 HOH C 201 O 91.6 87.0 166.3 81.6 102.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 478 OD1 REMARK 620 2 ASP B 660 OD2 94.5 REMARK 620 3 HOH B 811 O 83.2 80.8 REMARK 620 4 HOH B 895 O 95.8 93.5 174.1 REMARK 620 5 DT F 10 OP2 104.3 154.1 83.8 102.1 REMARK 620 6 DT F 10 OP1 171.2 87.4 88.7 92.6 71.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 478 OD2 REMARK 620 2 ASP B 546 OD2 86.1 REMARK 620 3 HOH B 805 O 101.5 75.2 REMARK 620 4 HOH B 806 O 99.8 166.0 91.1 REMARK 620 5 DT F 10 OP2 98.8 85.3 150.6 106.1 REMARK 620 6 DC H 9 O3' 158.9 80.0 90.2 97.4 64.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 685 O REMARK 620 2 VAL B 685 OXT 57.5 REMARK 620 3 HOH B 801 O 89.1 82.9 REMARK 620 4 DT E 1 OP3 146.6 89.1 87.4 REMARK 620 5 HOH E 201 O 93.1 84.8 163.8 81.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N41 RELATED DB: PDB REMARK 900 RELATED ID: 4N47 RELATED DB: PDB REMARK 900 RELATED ID: 4N76 RELATED DB: PDB REMARK 900 RELATED ID: 4NCB RELATED DB: PDB DBREF 4NCA A 1 685 UNP Q746M7 Q746M7_THET2 1 685 DBREF 4NCA B 1 685 UNP Q746M7 Q746M7_THET2 1 685 DBREF 4NCA C 1 21 PDB 4NCA 4NCA 1 21 DBREF 4NCA E 1 21 PDB 4NCA 4NCA 1 21 DBREF 4NCA D 10 19 PDB 4NCA 4NCA 10 19 DBREF 4NCA F 10 19 PDB 4NCA 4NCA 10 19 DBREF 4NCA G 1 6 PDB 4NCA 4NCA 1 6 DBREF 4NCA H 4 9 PDB 4NCA 4NCA 4 9 SEQRES 1 A 685 MET ASN HIS LEU GLY LYS THR GLU VAL PHE LEU ASN ARG SEQRES 2 A 685 PHE ALA LEU ARG PRO LEU ASN PRO GLU GLU LEU ARG PRO SEQRES 3 A 685 TRP ARG LEU GLU VAL VAL LEU ASP PRO PRO PRO GLY ARG SEQRES 4 A 685 GLU GLU VAL TYR PRO LEU LEU ALA GLN VAL ALA ARG ARG SEQRES 5 A 685 ALA GLY GLY VAL THR VAL ARG MET GLY ASP GLY LEU ALA SEQRES 6 A 685 SER TRP SER PRO PRO GLU VAL LEU VAL LEU GLU GLY THR SEQRES 7 A 685 LEU ALA ARG MET GLY GLN THR TYR ALA TYR ARG LEU TYR SEQRES 8 A 685 PRO LYS GLY ARG ARG PRO LEU ASP PRO LYS ASP PRO GLY SEQRES 9 A 685 GLU ARG SER VAL LEU SER ALA LEU ALA ARG ARG LEU LEU SEQRES 10 A 685 GLN GLU ARG LEU ARG ARG LEU GLU GLY VAL TRP VAL GLU SEQRES 11 A 685 GLY LEU ALA VAL TYR ARG ARG GLU HIS ALA ARG GLY PRO SEQRES 12 A 685 GLY TRP ARG VAL LEU GLY GLY ALA VAL LEU ASP LEU TRP SEQRES 13 A 685 VAL SER ASP SER GLY ALA PHE LEU LEU GLU VAL ASP PRO SEQRES 14 A 685 ALA TYR ARG ILE LEU CYS GLU MET SER LEU GLU ALA TRP SEQRES 15 A 685 LEU ALA GLN GLY HIS PRO LEU PRO LYS ARG VAL ARG ASN SEQRES 16 A 685 ALA TYR ASP ARG ARG THR TRP GLU LEU LEU ARG LEU GLY SEQRES 17 A 685 GLU GLU ASP PRO LYS GLU LEU PRO LEU PRO GLY GLY LEU SEQRES 18 A 685 SER LEU LEU ASP TYR HIS ALA SER LYS GLY ARG LEU GLN SEQRES 19 A 685 GLY ARG GLU GLY GLY ARG VAL ALA TRP VAL ALA ASP PRO SEQRES 20 A 685 LYS ASP PRO ARG LYS PRO ILE PRO HIS LEU THR GLY LEU SEQRES 21 A 685 LEU VAL PRO VAL LEU THR LEU GLU ASP LEU HIS GLU GLU SEQRES 22 A 685 GLU GLY SER LEU ALA LEU SER LEU PRO TRP GLU GLU ARG SEQRES 23 A 685 ARG ARG ARG THR ARG GLU ILE ALA SER TRP ILE GLY ARG SEQRES 24 A 685 ARG LEU GLY LEU GLY THR PRO GLU ALA VAL ARG ALA GLN SEQRES 25 A 685 ALA TYR ARG LEU SER ILE PRO LYS LEU MET GLY ARG ARG SEQRES 26 A 685 ALA VAL SER LYS PRO ALA ASP ALA LEU ARG VAL GLY PHE SEQRES 27 A 685 TYR ARG ALA GLN GLU THR ALA LEU ALA LEU LEU ARG LEU SEQRES 28 A 685 ASP GLY ALA GLN GLY TRP PRO GLU PHE LEU ARG ARG ALA SEQRES 29 A 685 LEU LEU ARG ALA PHE GLY ALA SER GLY ALA SER LEU ARG SEQRES 30 A 685 LEU HIS THR LEU HIS ALA HIS PRO SER GLN GLY LEU ALA SEQRES 31 A 685 PHE ARG GLU ALA LEU ARG LYS ALA LYS GLU GLU GLY VAL SEQRES 32 A 685 GLN ALA VAL LEU VAL LEU THR PRO PRO MET ALA TRP GLU SEQRES 33 A 685 ASP ARG ASN ARG LEU LYS ALA LEU LEU LEU ARG GLU GLY SEQRES 34 A 685 LEU PRO SER GLN ILE LEU ASN VAL PRO LEU ARG GLU GLU SEQRES 35 A 685 GLU ARG HIS ARG TRP GLU ASN ALA LEU LEU GLY LEU LEU SEQRES 36 A 685 ALA LYS ALA GLY LEU GLN VAL VAL ALA LEU SER GLY ALA SEQRES 37 A 685 TYR PRO ALA GLU LEU ALA VAL GLY PHE ASP ALA GLY GLY SEQRES 38 A 685 ARG GLU SER PHE ARG PHE GLY GLY ALA ALA CYS ALA VAL SEQRES 39 A 685 GLY GLY ASP GLY GLY HIS LEU LEU TRP THR LEU PRO GLU SEQRES 40 A 685 ALA GLN ALA GLY GLU ARG ILE PRO GLN GLU VAL VAL TRP SEQRES 41 A 685 ASP LEU LEU GLU GLU THR LEU TRP ALA PHE ARG ARG LYS SEQRES 42 A 685 ALA GLY ARG LEU PRO SER ARG VAL LEU LEU LEU ARG ASP SEQRES 43 A 685 GLY ARG VAL PRO GLN ASP GLU PHE ALA LEU ALA LEU GLU SEQRES 44 A 685 ALA LEU ALA ARG GLU GLY ILE ALA TYR ASP LEU VAL SER SEQRES 45 A 685 VAL ARG LYS SER GLY GLY GLY ARG VAL TYR PRO VAL GLN SEQRES 46 A 685 GLY ARG LEU ALA ASP GLY LEU TYR VAL PRO LEU GLU ASP SEQRES 47 A 685 LYS THR PHE LEU LEU LEU THR VAL HIS ARG ASP PHE ARG SEQRES 48 A 685 GLY THR PRO ARG PRO LEU LYS LEU VAL HIS GLU ALA GLY SEQRES 49 A 685 ASP THR PRO LEU GLU ALA LEU ALA HIS GLN ILE PHE HIS SEQRES 50 A 685 LEU THR ARG LEU TYR PRO ALA SER GLY PHE ALA PHE PRO SEQRES 51 A 685 ARG LEU PRO ALA PRO LEU HIS LEU ALA ASP ARG LEU VAL SEQRES 52 A 685 LYS GLU VAL GLY ARG LEU GLY ILE ARG HIS LEU LYS GLU SEQRES 53 A 685 VAL ASP ARG GLU LYS LEU PHE PHE VAL SEQRES 1 B 685 MET ASN HIS LEU GLY LYS THR GLU VAL PHE LEU ASN ARG SEQRES 2 B 685 PHE ALA LEU ARG PRO LEU ASN PRO GLU GLU LEU ARG PRO SEQRES 3 B 685 TRP ARG LEU GLU VAL VAL LEU ASP PRO PRO PRO GLY ARG SEQRES 4 B 685 GLU GLU VAL TYR PRO LEU LEU ALA GLN VAL ALA ARG ARG SEQRES 5 B 685 ALA GLY GLY VAL THR VAL ARG MET GLY ASP GLY LEU ALA SEQRES 6 B 685 SER TRP SER PRO PRO GLU VAL LEU VAL LEU GLU GLY THR SEQRES 7 B 685 LEU ALA ARG MET GLY GLN THR TYR ALA TYR ARG LEU TYR SEQRES 8 B 685 PRO LYS GLY ARG ARG PRO LEU ASP PRO LYS ASP PRO GLY SEQRES 9 B 685 GLU ARG SER VAL LEU SER ALA LEU ALA ARG ARG LEU LEU SEQRES 10 B 685 GLN GLU ARG LEU ARG ARG LEU GLU GLY VAL TRP VAL GLU SEQRES 11 B 685 GLY LEU ALA VAL TYR ARG ARG GLU HIS ALA ARG GLY PRO SEQRES 12 B 685 GLY TRP ARG VAL LEU GLY GLY ALA VAL LEU ASP LEU TRP SEQRES 13 B 685 VAL SER ASP SER GLY ALA PHE LEU LEU GLU VAL ASP PRO SEQRES 14 B 685 ALA TYR ARG ILE LEU CYS GLU MET SER LEU GLU ALA TRP SEQRES 15 B 685 LEU ALA GLN GLY HIS PRO LEU PRO LYS ARG VAL ARG ASN SEQRES 16 B 685 ALA TYR ASP ARG ARG THR TRP GLU LEU LEU ARG LEU GLY SEQRES 17 B 685 GLU GLU ASP PRO LYS GLU LEU PRO LEU PRO GLY GLY LEU SEQRES 18 B 685 SER LEU LEU ASP TYR HIS ALA SER LYS GLY ARG LEU GLN SEQRES 19 B 685 GLY ARG GLU GLY GLY ARG VAL ALA TRP VAL ALA ASP PRO SEQRES 20 B 685 LYS ASP PRO ARG LYS PRO ILE PRO HIS LEU THR GLY LEU SEQRES 21 B 685 LEU VAL PRO VAL LEU THR LEU GLU ASP LEU HIS GLU GLU SEQRES 22 B 685 GLU GLY SER LEU ALA LEU SER LEU PRO TRP GLU GLU ARG SEQRES 23 B 685 ARG ARG ARG THR ARG GLU ILE ALA SER TRP ILE GLY ARG SEQRES 24 B 685 ARG LEU GLY LEU GLY THR PRO GLU ALA VAL ARG ALA GLN SEQRES 25 B 685 ALA TYR ARG LEU SER ILE PRO LYS LEU MET GLY ARG ARG SEQRES 26 B 685 ALA VAL SER LYS PRO ALA ASP ALA LEU ARG VAL GLY PHE SEQRES 27 B 685 TYR ARG ALA GLN GLU THR ALA LEU ALA LEU LEU ARG LEU SEQRES 28 B 685 ASP GLY ALA GLN GLY TRP PRO GLU PHE LEU ARG ARG ALA SEQRES 29 B 685 LEU LEU ARG ALA PHE GLY ALA SER GLY ALA SER LEU ARG SEQRES 30 B 685 LEU HIS THR LEU HIS ALA HIS PRO SER GLN GLY LEU ALA SEQRES 31 B 685 PHE ARG GLU ALA LEU ARG LYS ALA LYS GLU GLU GLY VAL SEQRES 32 B 685 GLN ALA VAL LEU VAL LEU THR PRO PRO MET ALA TRP GLU SEQRES 33 B 685 ASP ARG ASN ARG LEU LYS ALA LEU LEU LEU ARG GLU GLY SEQRES 34 B 685 LEU PRO SER GLN ILE LEU ASN VAL PRO LEU ARG GLU GLU SEQRES 35 B 685 GLU ARG HIS ARG TRP GLU ASN ALA LEU LEU GLY LEU LEU SEQRES 36 B 685 ALA LYS ALA GLY LEU GLN VAL VAL ALA LEU SER GLY ALA SEQRES 37 B 685 TYR PRO ALA GLU LEU ALA VAL GLY PHE ASP ALA GLY GLY SEQRES 38 B 685 ARG GLU SER PHE ARG PHE GLY GLY ALA ALA CYS ALA VAL SEQRES 39 B 685 GLY GLY ASP GLY GLY HIS LEU LEU TRP THR LEU PRO GLU SEQRES 40 B 685 ALA GLN ALA GLY GLU ARG ILE PRO GLN GLU VAL VAL TRP SEQRES 41 B 685 ASP LEU LEU GLU GLU THR LEU TRP ALA PHE ARG ARG LYS SEQRES 42 B 685 ALA GLY ARG LEU PRO SER ARG VAL LEU LEU LEU ARG ASP SEQRES 43 B 685 GLY ARG VAL PRO GLN ASP GLU PHE ALA LEU ALA LEU GLU SEQRES 44 B 685 ALA LEU ALA ARG GLU GLY ILE ALA TYR ASP LEU VAL SER SEQRES 45 B 685 VAL ARG LYS SER GLY GLY GLY ARG VAL TYR PRO VAL GLN SEQRES 46 B 685 GLY ARG LEU ALA ASP GLY LEU TYR VAL PRO LEU GLU ASP SEQRES 47 B 685 LYS THR PHE LEU LEU LEU THR VAL HIS ARG ASP PHE ARG SEQRES 48 B 685 GLY THR PRO ARG PRO LEU LYS LEU VAL HIS GLU ALA GLY SEQRES 49 B 685 ASP THR PRO LEU GLU ALA LEU ALA HIS GLN ILE PHE HIS SEQRES 50 B 685 LEU THR ARG LEU TYR PRO ALA SER GLY PHE ALA PHE PRO SEQRES 51 B 685 ARG LEU PRO ALA PRO LEU HIS LEU ALA ASP ARG LEU VAL SEQRES 52 B 685 LYS GLU VAL GLY ARG LEU GLY ILE ARG HIS LEU LYS GLU SEQRES 53 B 685 VAL ASP ARG GLU LYS LEU PHE PHE VAL SEQRES 1 C 21 DT DG DA DG DG DT DA DG DT DA DG DG DT SEQRES 2 C 21 DT DG DT DA DT DA DG DT SEQRES 1 D 10 DT DA DC DT DA DC DC DT DC DG SEQRES 1 E 21 DT DG DA DG DG DT DA DG DT DA DG DG DT SEQRES 2 E 21 DT DG DT DA DT DA DG DT SEQRES 1 F 10 DT DA DC DT DA DC DC DT DC DG SEQRES 1 G 6 DA DC DA DA DC DC SEQRES 1 H 6 DA DC DA DA DC DC HET TMP A 701 21 HET MG A 702 1 HET TMP B 701 21 HET MG B 702 1 HET MG B 703 1 HET MG C 101 1 HET MG D 101 1 HET MG E 101 1 HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 9 TMP 2(C10 H15 N2 O8 P) FORMUL 10 MG 6(MG 2+) FORMUL 17 HOH *320(H2 O) HELIX 1 1 GLU A 41 ALA A 53 1 13 HELIX 2 2 PRO A 69 LEU A 73 5 5 HELIX 3 3 ASP A 102 ARG A 123 1 22 HELIX 4 4 SER A 178 ALA A 184 1 7 HELIX 5 5 ASP A 211 LEU A 215 5 5 HELIX 6 6 SER A 222 LYS A 230 1 9 HELIX 7 7 PRO A 282 LEU A 301 1 20 HELIX 8 8 LYS A 329 ALA A 331 5 3 HELIX 9 9 ASP A 332 GLY A 337 1 6 HELIX 10 10 PRO A 358 GLY A 373 1 16 HELIX 11 11 HIS A 384 GLN A 387 5 4 HELIX 12 12 GLY A 388 GLU A 401 1 14 HELIX 13 13 ALA A 414 GLU A 428 1 15 HELIX 14 14 GLU A 443 ALA A 458 1 16 HELIX 15 15 PRO A 515 GLY A 535 1 21 HELIX 16 16 PHE A 554 GLU A 564 1 11 HELIX 17 17 PRO A 627 THR A 639 1 13 HELIX 18 18 ARG A 640 TYR A 642 5 3 HELIX 19 19 PRO A 653 GLY A 670 1 18 HELIX 20 20 ASN B 20 ARG B 25 1 6 HELIX 21 21 GLY B 38 GLU B 40 5 3 HELIX 22 22 GLU B 41 GLY B 54 1 14 HELIX 23 23 PRO B 69 LEU B 73 5 5 HELIX 24 24 ASP B 102 LEU B 124 1 23 HELIX 25 25 SER B 178 ALA B 184 1 7 HELIX 26 26 ASP B 211 LEU B 215 5 5 HELIX 27 27 SER B 222 LYS B 230 1 9 HELIX 28 28 THR B 266 LEU B 270 5 5 HELIX 29 29 PRO B 282 LEU B 301 1 20 HELIX 30 30 LYS B 329 ALA B 331 5 3 HELIX 31 31 ASP B 332 GLY B 337 1 6 HELIX 32 32 PRO B 358 GLY B 373 1 16 HELIX 33 33 HIS B 384 GLN B 387 5 4 HELIX 34 34 GLY B 388 GLY B 402 1 15 HELIX 35 35 ALA B 414 GLU B 428 1 15 HELIX 36 36 GLU B 443 GLY B 459 1 17 HELIX 37 37 PRO B 515 GLY B 535 1 21 HELIX 38 38 PHE B 554 GLU B 564 1 11 HELIX 39 39 PRO B 627 THR B 639 1 13 HELIX 40 40 PRO B 653 GLY B 670 1 18 HELIX 41 41 ILE B 671 LEU B 674 5 4 SHEET 1 A14 TRP A 128 GLU A 130 0 SHEET 2 A14 ALA A 133 GLY A 142 -1 O ALA A 133 N GLU A 130 SHEET 3 A14 TRP A 145 VAL A 157 -1 O VAL A 147 N ALA A 140 SHEET 4 A14 ALA A 162 CYS A 175 -1 O LEU A 174 N ARG A 146 SHEET 5 A14 LYS A 6 PRO A 18 -1 N LEU A 16 O PHE A 163 SHEET 6 A14 GLU A 307 ARG A 315 -1 O ALA A 311 N VAL A 9 SHEET 7 A14 LEU A 592 GLU A 597 -1 O TYR A 593 N TYR A 314 SHEET 8 A14 THR A 600 LEU A 604 -1 O LEU A 602 N VAL A 594 SHEET 9 A14 LEU A 617 ALA A 623 -1 O LEU A 619 N PHE A 601 SHEET 10 A14 ALA A 567 ARG A 574 -1 N ARG A 574 O LYS A 618 SHEET 11 A14 ARG A 540 ASP A 546 1 N LEU A 543 O ASP A 569 SHEET 12 A14 LEU A 473 GLY A 480 1 N VAL A 475 O LEU A 544 SHEET 13 A14 ARG A 486 VAL A 494 -1 O GLY A 489 N ASP A 478 SHEET 14 A14 GLU A 507 GLN A 509 -1 O GLN A 509 N ARG A 486 SHEET 1 B11 HIS A 500 TRP A 503 0 SHEET 2 B11 ARG A 486 VAL A 494 -1 N VAL A 494 O HIS A 500 SHEET 3 B11 LEU A 473 GLY A 480 -1 N ASP A 478 O GLY A 489 SHEET 4 B11 ARG A 540 ASP A 546 1 O LEU A 544 N VAL A 475 SHEET 5 B11 ALA A 567 ARG A 574 1 O ASP A 569 N LEU A 543 SHEET 6 B11 LEU A 617 ALA A 623 -1 O LYS A 618 N ARG A 574 SHEET 7 B11 THR A 600 LEU A 604 -1 N PHE A 601 O LEU A 619 SHEET 8 B11 LEU A 592 GLU A 597 -1 N VAL A 594 O LEU A 602 SHEET 9 B11 GLU A 307 ARG A 315 -1 N TYR A 314 O TYR A 593 SHEET 10 B11 LYS A 6 PRO A 18 -1 N VAL A 9 O ALA A 311 SHEET 11 B11 VAL A 581 PRO A 583 -1 O TYR A 582 N PHE A 10 SHEET 1 C 5 THR A 57 MET A 60 0 SHEET 2 C 5 GLY A 63 SER A 66 -1 O ALA A 65 N VAL A 58 SHEET 3 C 5 TRP A 27 ASP A 34 -1 N LEU A 29 O LEU A 64 SHEET 4 C 5 GLN A 84 ARG A 95 -1 O GLY A 94 N ARG A 28 SHEET 5 C 5 GLU A 76 ARG A 81 -1 N GLY A 77 O TYR A 88 SHEET 1 D 5 ASP A 249 ILE A 254 0 SHEET 2 D 5 VAL A 244 ASP A 246 -1 N VAL A 244 O ILE A 254 SHEET 3 D 5 THR A 201 LEU A 204 -1 N GLU A 203 O ALA A 245 SHEET 4 D 5 VAL A 193 ASN A 195 -1 N VAL A 193 O TRP A 202 SHEET 5 D 5 LEU A 261 PRO A 263 -1 O VAL A 262 N ARG A 194 SHEET 1 E 2 LYS A 320 MET A 322 0 SHEET 2 E 2 ALA A 464 SER A 466 -1 O ALA A 464 N MET A 322 SHEET 1 F 4 LEU A 376 THR A 380 0 SHEET 2 F 4 THR A 344 ARG A 350 1 N LEU A 346 O HIS A 379 SHEET 3 F 4 ALA A 405 THR A 410 1 O LEU A 407 N LEU A 349 SHEET 4 F 4 SER A 432 ASN A 436 1 O GLN A 433 N VAL A 408 SHEET 1 G14 TRP B 128 GLU B 130 0 SHEET 2 G14 ALA B 133 GLY B 142 -1 O TYR B 135 N TRP B 128 SHEET 3 G14 TRP B 145 VAL B 157 -1 O TRP B 145 N GLY B 142 SHEET 4 G14 ALA B 162 LEU B 174 -1 O ARG B 172 N LEU B 148 SHEET 5 G14 LYS B 6 PRO B 18 -1 N LEU B 16 O PHE B 163 SHEET 6 G14 GLU B 307 ARG B 315 -1 O GLU B 307 N ALA B 15 SHEET 7 G14 LEU B 592 GLU B 597 -1 O TYR B 593 N TYR B 314 SHEET 8 G14 THR B 600 LEU B 604 -1 O THR B 600 N LEU B 596 SHEET 9 G14 LEU B 617 ALA B 623 -1 O LEU B 619 N PHE B 601 SHEET 10 G14 ALA B 567 ARG B 574 -1 N SER B 572 O VAL B 620 SHEET 11 G14 ARG B 540 ASP B 546 1 N LEU B 543 O VAL B 571 SHEET 12 G14 LEU B 473 GLY B 480 1 N LEU B 473 O LEU B 542 SHEET 13 G14 ARG B 486 VAL B 494 -1 O GLY B 489 N ASP B 478 SHEET 14 G14 GLU B 507 GLN B 509 -1 O GLU B 507 N GLY B 488 SHEET 1 H11 HIS B 500 TRP B 503 0 SHEET 2 H11 ARG B 486 VAL B 494 -1 N CYS B 492 O LEU B 502 SHEET 3 H11 LEU B 473 GLY B 480 -1 N ASP B 478 O GLY B 489 SHEET 4 H11 ARG B 540 ASP B 546 1 O LEU B 542 N LEU B 473 SHEET 5 H11 ALA B 567 ARG B 574 1 O VAL B 571 N LEU B 543 SHEET 6 H11 LEU B 617 ALA B 623 -1 O VAL B 620 N SER B 572 SHEET 7 H11 THR B 600 LEU B 604 -1 N PHE B 601 O LEU B 619 SHEET 8 H11 LEU B 592 GLU B 597 -1 N LEU B 596 O THR B 600 SHEET 9 H11 GLU B 307 ARG B 315 -1 N TYR B 314 O TYR B 593 SHEET 10 H11 LYS B 6 PRO B 18 -1 N ALA B 15 O GLU B 307 SHEET 11 H11 VAL B 581 PRO B 583 -1 O TYR B 582 N PHE B 10 SHEET 1 I 5 THR B 57 MET B 60 0 SHEET 2 I 5 GLY B 63 SER B 66 -1 O ALA B 65 N VAL B 58 SHEET 3 I 5 TRP B 27 ASP B 34 -1 N TRP B 27 O SER B 66 SHEET 4 I 5 GLN B 84 ARG B 95 -1 O GLY B 94 N ARG B 28 SHEET 5 I 5 GLU B 76 ARG B 81 -1 N GLY B 77 O TYR B 88 SHEET 1 J 5 ILE B 254 LEU B 257 0 SHEET 2 J 5 VAL B 241 ALA B 245 -1 N VAL B 244 O ILE B 254 SHEET 3 J 5 THR B 201 GLY B 208 -1 N ARG B 206 O TRP B 243 SHEET 4 J 5 ARG B 192 ASN B 195 -1 N VAL B 193 O TRP B 202 SHEET 5 J 5 LEU B 261 PRO B 263 -1 O VAL B 262 N ARG B 194 SHEET 1 K 3 ALA B 326 VAL B 327 0 SHEET 2 K 3 LEU B 321 MET B 322 -1 N LEU B 321 O VAL B 327 SHEET 3 K 3 ALA B 464 LEU B 465 -1 O ALA B 464 N MET B 322 SHEET 1 L 4 LEU B 376 THR B 380 0 SHEET 2 L 4 THR B 344 ARG B 350 1 N LEU B 346 O HIS B 379 SHEET 3 L 4 ALA B 405 THR B 410 1 O LEU B 407 N LEU B 349 SHEET 4 L 4 SER B 432 ASN B 436 1 O LEU B 435 N VAL B 408 LINK OD2 ASP A 478 MG MG A 702 1555 1555 2.07 LINK OD1 ASP A 478 MG MG D 101 1555 1555 2.06 LINK OD2 ASP A 546 MG MG A 702 1555 1555 2.14 LINK OD2 ASP A 660 MG MG D 101 1555 1555 1.96 LINK O VAL A 685 MG MG C 101 1555 1555 1.98 LINK OXT VAL A 685 MG MG C 101 1555 1555 2.29 LINK MG MG A 702 O HOH A 802 1555 1555 2.10 LINK MG MG A 702 O HOH A 806 1555 1555 2.10 LINK MG MG A 702 OP3 DT D 10 1555 1555 1.97 LINK MG MG A 702 O3' DC G 6 1555 1555 2.22 LINK O HOH A 801 MG MG C 101 1555 1555 2.08 LINK OD1 ASP B 478 MG MG B 702 1555 1555 2.09 LINK OD2 ASP B 478 MG MG B 703 1555 1555 2.13 LINK OD2 ASP B 546 MG MG B 703 1555 1555 2.06 LINK OD2 ASP B 660 MG MG B 702 1555 1555 2.07 LINK O VAL B 685 MG MG E 101 1555 1555 1.95 LINK OXT VAL B 685 MG MG E 101 1555 1555 2.39 LINK MG MG B 702 O HOH B 811 1555 1555 2.07 LINK MG MG B 702 O HOH B 895 1555 1555 2.08 LINK MG MG B 702 OP2 DT F 10 1555 1555 2.15 LINK MG MG B 702 OP1 DT F 10 1555 1555 2.22 LINK MG MG B 703 O HOH B 805 1555 1555 2.08 LINK MG MG B 703 O HOH B 806 1555 1555 2.06 LINK MG MG B 703 OP2 DT F 10 1555 1555 1.99 LINK MG MG B 703 O3' DC H 9 1555 1555 2.26 LINK O HOH B 801 MG MG E 101 1555 1555 2.05 LINK OP3 DT C 1 MG MG C 101 1555 1555 2.02 LINK OP1 DA C 3 MG MG C 101 1555 1555 1.79 LINK MG MG C 101 O HOH C 201 1555 1555 2.06 LINK MG MG D 101 O HOH D 201 1555 1555 2.12 LINK MG MG D 101 O HOH D 202 1555 1555 2.08 LINK OP3 DT E 1 MG MG E 101 1555 1555 2.08 LINK MG MG E 101 O HOH E 201 1555 1555 2.07 CISPEP 1 ASP A 34 PRO A 35 0 3.72 CISPEP 2 GLU A 125 GLY A 126 0 -4.83 CISPEP 3 ASP B 34 PRO B 35 0 3.30 CISPEP 4 VAL B 437 PRO B 438 0 4.88 SITE 1 AC1 15 ASN A 195 TYR A 197 ARG A 200 LEU A 217 SITE 2 AC1 15 PRO A 218 LEU A 223 TYR A 226 HIS A 227 SITE 3 AC1 15 ARG A 232 ILE A 254 PRO A 255 HIS A 256 SITE 4 AC1 15 PRO B 37 GLY B 38 ARG B 39 SITE 1 AC2 8 ASP A 478 ALA A 479 ASP A 546 HOH A 802 SITE 2 AC2 8 HOH A 806 DT D 10 MG D 101 DC G 6 SITE 1 AC3 16 PRO A 37 GLY A 38 ARG A 39 ASN B 195 SITE 2 AC3 16 TYR B 197 ARG B 200 LEU B 217 PRO B 218 SITE 3 AC3 16 LEU B 223 TYR B 226 HIS B 227 ARG B 232 SITE 4 AC3 16 ILE B 254 PRO B 255 HIS B 256 HOH B 819 SITE 1 AC4 6 ASP B 478 ASP B 660 MG B 703 HOH B 811 SITE 2 AC4 6 HOH B 895 DT F 10 SITE 1 AC5 8 ASP B 478 ALA B 479 ASP B 546 MG B 702 SITE 2 AC5 8 HOH B 805 HOH B 806 DT F 10 DC H 9 SITE 1 AC6 5 VAL A 685 HOH A 801 DT C 1 DA C 3 SITE 2 AC6 5 HOH C 201 SITE 1 AC7 6 ASP A 478 ASP A 660 MG A 702 DT D 10 SITE 2 AC7 6 HOH D 201 HOH D 202 SITE 1 AC8 5 VAL B 685 HOH B 801 DT E 1 DA E 3 SITE 2 AC8 5 HOH E 201 CRYST1 110.950 117.561 160.380 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006235 0.00000