HEADER HYDROLASE 25-OCT-13 4NCY TITLE IN SITU TRYPSIN CRYSTALLIZED ON A MITEGEN MICROMESH WITH IMIDAZOLE TITLE 2 LIGAND CAVEAT 4NCY C-N(A) BOND DISTANCE BETWEEN RESIDUE A PRO 132 AND RESIDUE A CAVEAT 2 4NCY ASP 133 IS OUTSIDE OF THE NORMAL RANGE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-246; COMPND 5 SYNONYM: BETA-TRYPSIN, ALPHA-TRYPSIN CHAIN 1, ALPHA-TRYPSIN CHAIN 2; COMPND 6 EC: 3.4.21.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS IMIDAZOLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YIN,A.SCALIA,L.LEROY,C.M.CUTTITTA,G.M.POLIZZO,D.L.ERICSON, AUTHOR 2 C.G.ROESSLER,O.CAMPOS,R.AGARWAL,M.ALLAIRE,A.M.ORVILLE,R.JACKIMOWICZ, AUTHOR 3 M.Y.MA,R.M.SWEET,A.S.SOARES REVDAT 4 20-SEP-23 4NCY 1 REMARK LINK REVDAT 3 24-SEP-14 4NCY 1 JRNL REVDAT 2 14-MAY-14 4NCY 1 JRNL REVDAT 1 09-APR-14 4NCY 0 JRNL AUTH X.YIN,A.SCALIA,L.LEROY,C.M.CUTTITTA,G.M.POLIZZO,D.L.ERICSON, JRNL AUTH 2 C.G.ROESSLER,O.CAMPOS,M.Y.MA,R.AGARWAL,R.JACKIMOWICZ, JRNL AUTH 3 M.ALLAIRE,A.M.ORVILLE,R.M.SWEET,A.S.SOARES JRNL TITL HITTING THE TARGET: FRAGMENT SCREENING WITH ACOUSTIC IN SITU JRNL TITL 2 CO-CRYSTALLIZATION OF PROTEINS PLUS FRAGMENT LIBRARIES ON JRNL TITL 3 PIN-MOUNTED DATA-COLLECTION MICROMESHES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1177 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24816088 JRNL DOI 10.1107/S1399004713034603 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.1330 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.1550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1845 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1699 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2513 ; 2.785 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3949 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 7.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;39.428 ;26.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;11.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;18.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2134 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 950 ; 1.048 ; 0.756 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 949 ; 1.048 ; 0.755 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1205 ; 1.526 ; 1.142 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1206 ; 1.526 ; 1.143 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 2.309 ; 0.979 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 896 ; 2.308 ; 0.979 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1309 ; 3.268 ; 1.367 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2481 ; 6.720 ; 9.574 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2213 ; 5.815 ; 7.626 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000083045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : 1.1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 43.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 46.31 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4I8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30MG/ML+10MG/ML BENZENMIDINE IN 20MM REMARK 280 HEPES PH 7 AND 10MM CACL2; PRECIPITANT IS 20% PEG 8000 + 200MM REMARK 280 AMSO4 + 100MM BIS-TRIS, IN SITU CRYSTALLIZATION ON MICROMESH, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.19600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.09300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.19600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.09300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 115 O HOH A 652 1.55 REMARK 500 OE2 GLU A 167 O HOH A 773 1.56 REMARK 500 OD2 ASP A 145 O HOH A 781 1.77 REMARK 500 OE1 GLU A 167 O HOH A 765 1.90 REMARK 500 OD1 ASP A 133 O HOH A 748 2.01 REMARK 500 O HOH A 790 O HOH A 791 2.16 REMARK 500 O HOH A 483 O HOH A 762 2.16 REMARK 500 OD1 ASP A 145 O HOH A 780 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 42 OD2 ASP A 133 4545 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 22 CE1 TYR A 22 CZ -0.088 REMARK 500 TYR A 42 CZ TYR A 42 CE2 -0.079 REMARK 500 TYR A 131 CD1 TYR A 131 CE1 0.109 REMARK 500 PRO A 132 C ASP A 133 N -0.170 REMARK 500 GLU A 167 CD GLU A 167 OE1 0.071 REMARK 500 GLU A 167 CD GLU A 167 OE2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 24 CB - CG - CD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 VAL A 36 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 TYR A 42 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 42 CE1 - CZ - CE2 ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 42 CZ - CE2 - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 64 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 64 CB - CG - CD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 131 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 131 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 SER A 147 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -79.59 -119.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 ASN A 54 O 90.9 REMARK 620 3 VAL A 57 O 165.6 81.6 REMARK 620 4 GLU A 62 OE2 102.7 159.8 88.0 REMARK 620 5 HOH A 402 O 86.9 88.9 105.1 77.2 REMARK 620 6 HOH A 410 O 79.3 103.8 90.5 93.4 161.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 314 DBREF 4NCY A 1 223 UNP P00760 TRY1_BOVIN 24 246 SEQRES 1 A 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 A 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 A 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 A 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 A 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 A 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 A 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 A 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 A 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 A 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 A 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 A 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 A 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 A 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 A 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 A 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 A 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 A 223 SER ASN HET CA A 301 1 HET BEN A 302 9 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 A 313 5 HET IMD A 314 5 HETNAM CA CALCIUM ION HETNAM BEN BENZAMIDINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM IMD IMIDAZOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 BEN C7 H8 N2 FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 SO4 5(O4 S 2-) FORMUL 15 IMD C3 H5 N2 1+ FORMUL 16 HOH *417(H2 O) HELIX 1 1 ALA A 38 TYR A 42 5 5 HELIX 2 2 SER A 144 TYR A 152 1 9 HELIX 3 3 TYR A 212 ASN A 223 1 12 SHEET 1 A 7 TYR A 5 THR A 6 0 SHEET 2 A 7 LYS A 136 PRO A 141 -1 O CYS A 137 N TYR A 5 SHEET 3 A 7 GLN A 115 GLY A 120 -1 N ILE A 118 O LEU A 138 SHEET 4 A 7 PRO A 180 CYS A 183 -1 O VAL A 182 N LEU A 117 SHEET 5 A 7 LYS A 186 TRP A 193 -1 O LYS A 186 N CYS A 183 SHEET 6 A 7 GLY A 204 LYS A 208 -1 O VAL A 205 N TRP A 193 SHEET 7 A 7 MET A 160 ALA A 163 -1 N PHE A 161 O TYR A 206 SHEET 1 B 7 GLN A 15 ASN A 19 0 SHEET 2 B 7 HIS A 23 ASN A 31 -1 O CYS A 25 N LEU A 18 SHEET 3 B 7 TRP A 34 SER A 37 -1 O VAL A 36 N SER A 28 SHEET 4 B 7 MET A 86 LEU A 90 -1 O MET A 86 N SER A 37 SHEET 5 B 7 GLN A 63 VAL A 72 -1 N ILE A 71 O LEU A 87 SHEET 6 B 7 GLN A 47 LEU A 50 -1 N LEU A 50 O GLN A 63 SHEET 7 B 7 GLN A 15 ASN A 19 -1 N SER A 17 O ARG A 49 SSBOND 1 CYS A 7 CYS A 137 1555 1555 2.05 SSBOND 2 CYS A 25 CYS A 41 1555 1555 2.06 SSBOND 3 CYS A 109 CYS A 210 1555 1555 1.98 SSBOND 4 CYS A 116 CYS A 183 1555 1555 2.00 SSBOND 5 CYS A 148 CYS A 162 1555 1555 2.07 SSBOND 6 CYS A 173 CYS A 197 1555 1555 2.08 LINK OE1 GLU A 52 CA CA A 301 1555 1555 2.23 LINK O ASN A 54 CA CA A 301 1555 1555 2.32 LINK O VAL A 57 CA CA A 301 1555 1555 2.26 LINK OE2 GLU A 62 CA CA A 301 1555 1555 2.33 LINK CA CA A 301 O HOH A 402 1555 1555 2.38 LINK CA CA A 301 O HOH A 410 1555 1555 2.38 SITE 1 AC1 6 GLU A 52 ASN A 54 VAL A 57 GLU A 62 SITE 2 AC1 6 HOH A 402 HOH A 410 SITE 1 AC2 12 ASP A 171 SER A 172 CYS A 173 GLN A 174 SITE 2 AC2 12 SER A 177 TRP A 193 GLY A 194 GLY A 196 SITE 3 AC2 12 GLY A 204 HOH A 428 HOH A 808 HOH A 810 SITE 1 AC3 10 ARG A 49 ILE A 55 ASN A 56 VAL A 58 SITE 2 AC3 10 VAL A 72 HIS A 73 PRO A 74 EDO A 304 SITE 3 AC3 10 HOH A 410 HOH A 438 SITE 1 AC4 8 TYR A 22 HIS A 23 ILE A 55 ASN A 56 SITE 2 AC4 8 VAL A 72 EDO A 303 HOH A 449 HOH A 712 SITE 1 AC5 7 CYS A 109 ALA A 110 PHE A 161 GLN A 188 SITE 2 AC5 7 LYS A 208 HOH A 417 HOH A 775 SITE 1 AC6 1 HOH A 595 SITE 1 AC7 5 VAL A 58 ASN A 77 ASN A 79 HOH A 424 SITE 2 AC7 5 HOH A 639 SITE 1 AC8 10 GLY A 45 ALA A 67 SER A 68 LYS A 69 SITE 2 AC8 10 SER A 130 TYR A 131 HOH A 645 HOH A 726 SITE 3 AC8 10 HOH A 805 HOH A 817 SITE 1 AC9 9 HIS A 40 GLN A 174 GLY A 175 SER A 177 SITE 2 AC9 9 HOH A 602 HOH A 642 HOH A 644 HOH A 674 SITE 3 AC9 9 HOH A 694 SITE 1 BC1 10 PRO A 106 THR A 107 SER A 108 GLY A 128 SITE 2 BC1 10 LYS A 186 GLN A 188 IMD A 314 HOH A 441 SITE 3 BC1 10 HOH A 627 HOH A 766 SITE 1 BC2 7 LYS A 149 PRO A 153 GLY A 154 HOH A 430 SITE 2 BC2 7 HOH A 584 HOH A 604 HOH A 776 SITE 1 BC3 8 LYS A 69 LYS A 89 THR A 129 HOH A 525 SITE 2 BC3 8 HOH A 623 HOH A 684 HOH A 725 HOH A 766 SITE 1 BC4 4 LYS A 125 SER A 126 SER A 127 HOH A 697 SITE 1 BC5 9 ASN A 123 LYS A 125 SER A 126 GLY A 128 SITE 2 BC5 9 GLN A 174 SER A 184 LYS A 186 CYS A 197 SITE 3 BC5 9 SO4 A 310 CRYST1 54.392 58.186 66.430 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015053 0.00000