HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 25-OCT-13 4ND1 TITLE CRYSTAL STRUCTURE OF THE LACTATE DEHYDROGENASE FROM CRYPTOSPORIDIUM TITLE 2 PARVUM COMPLEXED WITH COFACTOR (B-NICOTINAMIDE ADENINE DINUCLEOTIDE) TITLE 3 AND INHIBITOR (OXAMIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTATE DEHYDROGENASE, ADJACENT GENE ENCODES PREDICTED COMPND 3 MALATE DEHYDROGENASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 17-337; COMPND 6 EC: 1.1.1.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 353152; SOURCE 4 STRAIN: IOWA II; SOURCE 5 GENE: CGD7_480, LDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ROSSMANN FOLD, DEHYDROGENASE, NAD BINDING, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.CHATTOPADHYAY,W.J.COOK REVDAT 6 30-OCT-24 4ND1 1 REMARK REVDAT 5 20-SEP-23 4ND1 1 REMARK REVDAT 4 17-JUL-19 4ND1 1 REMARK LINK REVDAT 3 15-NOV-17 4ND1 1 REMARK REVDAT 2 11-MAR-15 4ND1 1 JRNL REVDAT 1 17-DEC-14 4ND1 0 SPRSDE 17-DEC-14 4ND1 2FNZ JRNL AUTH W.J.COOK,O.SENKOVICH,A.HERNANDEZ,H.SPEED,D.CHATTOPADHYAY JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 CRYPTOSPORIDIUM PARVUM LACTATE DEHYDROGENASE. JRNL REF INT.J.BIOL.MACROMOL. V. 74C 608 2014 JRNL REFN ISSN 0141-8130 JRNL PMID 25542170 JRNL DOI 10.1016/J.IJBIOMAC.2014.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 45370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -4.24000 REMARK 3 B12 (A**2) : 1.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4914 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4764 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6664 ; 0.954 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10984 ; 0.662 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 4.845 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;36.326 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;11.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5506 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1032 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ND1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000083048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2EWD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS INCUBATED WITH 1 MM REMARK 280 PYRUVATE AND 100 UM APAD+ FOR 1 HOUR ON ICE PRIOR TO REMARK 280 CRYSTALLIZATION. RESERVOIR SOLUTION WAS 1.45-1.65 M AMMONIUM REMARK 280 SULFATE IN 0.1 M SODIUM CACODYLATE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.38133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.69067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.69067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.38133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 185.07200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 GLY A 336 REMARK 465 ALA A 337 REMARK 465 ALA B 334 REMARK 465 ALA B 335 REMARK 465 GLY B 336 REMARK 465 ALA B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 107 13.79 -147.42 REMARK 500 CYS A 131 67.07 -156.89 REMARK 500 THR A 139 129.49 -36.35 REMARK 500 ALA A 164 -55.42 -162.97 REMARK 500 LYS A 244A -59.37 78.46 REMARK 500 TYR A 247 -24.53 -145.97 REMARK 500 ASP B 107 22.88 -156.68 REMARK 500 THR B 139 125.61 -38.13 REMARK 500 ALA B 164 -57.20 -164.62 REMARK 500 TYR B 247 -22.28 -148.59 REMARK 500 ASN B 277 -46.56 -151.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ND2 RELATED DB: PDB REMARK 900 RELATED ID: 4ND3 RELATED DB: PDB REMARK 900 RELATED ID: 4ND4 RELATED DB: PDB REMARK 900 RELATED ID: 4ND5 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PEPTIDE SEQUENCE FOR THIS ENTRY WAS TRANSLATED FROM DNA SEQUENCING REMARK 999 OF ACTUAL CLONE USED FOR PROTEIN EXPRESSION. AUTHORS DO NOT KNOW IF REMARK 999 THE SEQUENCE DIFFERENCES ARE PCR ERRORS OR MUTATIONS CORRESPONDING REMARK 999 DNA POLYMORPHISM OR THERE WERE ERRORS IN PROTEIN DATABASE. DBREF 4ND1 A 17 337 UNP Q5CYZ2 Q5CYZ2_CRYPI 17 337 DBREF 4ND1 B 17 337 UNP Q5CYZ2 Q5CYZ2_CRYPI 17 337 SEQADV 4ND1 ALA A 202 UNP Q5CYZ2 VAL 200 SEE REMARK 999 SEQADV 4ND1 ALA B 202 UNP Q5CYZ2 VAL 200 SEE REMARK 999 SEQRES 1 A 321 MET ILE GLU ARG ARG LYS ILE ALA VAL ILE GLY SER GLY SEQRES 2 A 321 GLN ILE GLY GLY ASN ILE ALA TYR ILE VAL GLY LYS ASP SEQRES 3 A 321 ASN LEU ALA ASP VAL VAL LEU PHE ASP ILE ALA GLU GLY SEQRES 4 A 321 ILE PRO GLN GLY LYS ALA LEU ASP ILE THR HIS SER MET SEQRES 5 A 321 VAL MET PHE GLY SER THR SER LYS VAL ILE GLY THR ASN SEQRES 6 A 321 ASP TYR ALA ASP ILE SER GLY SER ASP VAL VAL ILE ILE SEQRES 7 A 321 THR ALA SER ILE PRO GLY ARG PRO LYS ASP ASP ARG SER SEQRES 8 A 321 GLU LEU LEU PHE GLY ASN ALA ARG ILE LEU ASP SER VAL SEQRES 9 A 321 ALA GLU GLY VAL LYS LYS TYR CYS PRO ASN ALA PHE VAL SEQRES 10 A 321 ILE CYS ILE THR ASN PRO LEU ASP VAL MET VAL SER HIS SEQRES 11 A 321 PHE GLN LYS VAL SER GLY LEU PRO HIS ASN LYS VAL CYS SEQRES 12 A 321 GLY MET ALA GLY VAL LEU ASP SER SER ARG PHE ARG THR SEQRES 13 A 321 PHE ILE ALA GLN HIS PHE GLY VAL ASN ALA SER ASP VAL SEQRES 14 A 321 SER ALA ASN VAL ILE GLY GLY HIS GLY ASP GLY MET VAL SEQRES 15 A 321 PRO ALA THR SER SER VAL SER VAL GLY GLY VAL PRO LEU SEQRES 16 A 321 SER SER PHE ILE LYS GLN GLY LEU ILE THR GLN GLU GLN SEQRES 17 A 321 ILE ASP GLU ILE VAL CYS HIS THR ARG ILE ALA TRP LYS SEQRES 18 A 321 GLU VAL ALA ASP ASN LEU LYS THR GLY THR ALA TYR PHE SEQRES 19 A 321 ALA PRO ALA ALA ALA ALA VAL LYS MET ALA GLU ALA TYR SEQRES 20 A 321 LEU LYS ASP LYS LYS ALA VAL VAL PRO CYS SER ALA PHE SEQRES 21 A 321 CYS SER ASN HIS TYR GLY VAL LYS GLY ILE TYR MET GLY SEQRES 22 A 321 VAL PRO THR ILE ILE GLY LYS ASN GLY VAL GLU ASP ILE SEQRES 23 A 321 LEU GLU LEU ASP LEU THR PRO LEU GLU GLN LYS LEU LEU SEQRES 24 A 321 GLY GLU SER ILE ASN GLU VAL ASN THR ILE SER LYS VAL SEQRES 25 A 321 LEU ASP ASN ALA PRO ALA ALA GLY ALA SEQRES 1 B 321 MET ILE GLU ARG ARG LYS ILE ALA VAL ILE GLY SER GLY SEQRES 2 B 321 GLN ILE GLY GLY ASN ILE ALA TYR ILE VAL GLY LYS ASP SEQRES 3 B 321 ASN LEU ALA ASP VAL VAL LEU PHE ASP ILE ALA GLU GLY SEQRES 4 B 321 ILE PRO GLN GLY LYS ALA LEU ASP ILE THR HIS SER MET SEQRES 5 B 321 VAL MET PHE GLY SER THR SER LYS VAL ILE GLY THR ASN SEQRES 6 B 321 ASP TYR ALA ASP ILE SER GLY SER ASP VAL VAL ILE ILE SEQRES 7 B 321 THR ALA SER ILE PRO GLY ARG PRO LYS ASP ASP ARG SER SEQRES 8 B 321 GLU LEU LEU PHE GLY ASN ALA ARG ILE LEU ASP SER VAL SEQRES 9 B 321 ALA GLU GLY VAL LYS LYS TYR CYS PRO ASN ALA PHE VAL SEQRES 10 B 321 ILE CYS ILE THR ASN PRO LEU ASP VAL MET VAL SER HIS SEQRES 11 B 321 PHE GLN LYS VAL SER GLY LEU PRO HIS ASN LYS VAL CYS SEQRES 12 B 321 GLY MET ALA GLY VAL LEU ASP SER SER ARG PHE ARG THR SEQRES 13 B 321 PHE ILE ALA GLN HIS PHE GLY VAL ASN ALA SER ASP VAL SEQRES 14 B 321 SER ALA ASN VAL ILE GLY GLY HIS GLY ASP GLY MET VAL SEQRES 15 B 321 PRO ALA THR SER SER VAL SER VAL GLY GLY VAL PRO LEU SEQRES 16 B 321 SER SER PHE ILE LYS GLN GLY LEU ILE THR GLN GLU GLN SEQRES 17 B 321 ILE ASP GLU ILE VAL CYS HIS THR ARG ILE ALA TRP LYS SEQRES 18 B 321 GLU VAL ALA ASP ASN LEU LYS THR GLY THR ALA TYR PHE SEQRES 19 B 321 ALA PRO ALA ALA ALA ALA VAL LYS MET ALA GLU ALA TYR SEQRES 20 B 321 LEU LYS ASP LYS LYS ALA VAL VAL PRO CYS SER ALA PHE SEQRES 21 B 321 CYS SER ASN HIS TYR GLY VAL LYS GLY ILE TYR MET GLY SEQRES 22 B 321 VAL PRO THR ILE ILE GLY LYS ASN GLY VAL GLU ASP ILE SEQRES 23 B 321 LEU GLU LEU ASP LEU THR PRO LEU GLU GLN LYS LEU LEU SEQRES 24 B 321 GLY GLU SER ILE ASN GLU VAL ASN THR ILE SER LYS VAL SEQRES 25 B 321 LEU ASP ASN ALA PRO ALA ALA GLY ALA HET NAD A 401 44 HET OXM A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET NAD B 401 44 HET OXM B 402 6 HET GOL B 403 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 OXM 2(C2 H3 N O3) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 11 HOH *150(H2 O) HELIX 1 1 GLY A 30 ASN A 44 1 15 HELIX 2 2 GLY A 57 GLY A 73B 1 18 HELIX 3 3 ASP A 84 SER A 89 5 6 HELIX 4 4 ASP A 108 GLU A 111 5 4 HELIX 5 5 LEU A 112 CYS A 131 1 20 HELIX 6 6 PRO A 141 GLY A 154 1 14 HELIX 7 7 PRO A 156 ASN A 158 5 3 HELIX 8 8 ALA A 164 GLY A 181 1 18 HELIX 9 9 ASN A 183 SER A 185 5 3 HELIX 10 10 THR A 203 SER A 205 5 3 HELIX 11 11 LEU A 212 GLN A 218A 1 7 HELIX 12 12 THR A 221 LYS A 244A 1 24 HELIX 13 13 TYR A 247 LYS A 263 1 17 HELIX 14 14 THR A 308 ASN A 331 1 24 HELIX 15 15 GLY B 30 ASP B 43 1 14 HELIX 16 16 GLY B 57 GLY B 73B 1 18 HELIX 17 17 ASP B 84 SER B 89 5 6 HELIX 18 18 ASP B 108 GLU B 111 5 4 HELIX 19 19 LEU B 112 CYS B 131 1 20 HELIX 20 20 PRO B 141 GLY B 154 1 14 HELIX 21 21 PRO B 156 ASN B 158 5 3 HELIX 22 22 ALA B 164 GLY B 181 1 18 HELIX 23 23 ASN B 183 SER B 185 5 3 HELIX 24 24 THR B 203 SER B 205 5 3 HELIX 25 25 LEU B 212 GLN B 218A 1 7 HELIX 26 26 THR B 221 ILE B 234 1 14 HELIX 27 27 ILE B 234 LYS B 244A 1 11 HELIX 28 28 TYR B 247 LYS B 263 1 17 HELIX 29 29 ASN B 277 VAL B 281 5 5 HELIX 30 30 THR B 308 ASN B 331 1 24 SHEET 1 A 6 VAL A 78 THR A 81 0 SHEET 2 A 6 ASP A 48 PHE A 52 1 N LEU A 51 O ILE A 79 SHEET 3 A 6 LYS A 23 ILE A 27 1 N ILE A 24 O ASP A 48 SHEET 4 A 6 VAL A 93 ILE A 96 1 O ILE A 95 N ALA A 25 SHEET 5 A 6 PHE A 134 CYS A 137 1 O ILE A 136 N VAL A 94 SHEET 6 A 6 VAL A 160 GLY A 162 1 O CYS A 161 N CYS A 137 SHEET 1 B 3 VAL A 187 SER A 188 0 SHEET 2 B 3 SER A 207 VAL A 208 -1 O SER A 207 N SER A 188 SHEET 3 B 3 VAL A 210A PRO A 210B-1 O VAL A 210A N VAL A 208 SHEET 1 C 2 VAL A 191 ILE A 192 0 SHEET 2 C 2 VAL A 200 PRO A 201 -1 O VAL A 200 N ILE A 192 SHEET 1 D 3 ALA A 267 CYS A 275 0 SHEET 2 D 3 ILE A 285 GLY A 294 -1 O ILE A 285 N CYS A 275 SHEET 3 D 3 GLY A 297 ILE A 302 -1 O GLU A 299 N ILE A 292 SHEET 1 E 6 VAL B 78 THR B 81 0 SHEET 2 E 6 ASP B 48 PHE B 52 1 N LEU B 51 O ILE B 79 SHEET 3 E 6 LYS B 23 ILE B 27 1 N VAL B 26 O VAL B 50 SHEET 4 E 6 VAL B 93 ILE B 96 1 O ILE B 95 N ALA B 25 SHEET 5 E 6 PHE B 134 CYS B 137 1 O ILE B 136 N VAL B 94 SHEET 6 E 6 VAL B 160 GLY B 162 1 O CYS B 161 N CYS B 137 SHEET 1 F 3 VAL B 187 SER B 188 0 SHEET 2 F 3 SER B 207 VAL B 208 -1 O SER B 207 N SER B 188 SHEET 3 F 3 VAL B 210A PRO B 210B-1 O VAL B 210A N VAL B 208 SHEET 1 G 2 VAL B 191 ILE B 192 0 SHEET 2 G 2 VAL B 200 PRO B 201 -1 O VAL B 200 N ILE B 192 SHEET 1 H 3 ALA B 267 CYS B 275 0 SHEET 2 H 3 ILE B 285 GLY B 294 -1 O ILE B 285 N CYS B 275 SHEET 3 H 3 GLY B 297 ILE B 302 -1 O GLU B 299 N ILE B 292 LINK C ARG A 20 N ARG A 22 1555 1555 1.33 LINK C ALA A 46 N ASP A 48 1555 1555 1.33 LINK C PHE A 73A N GLY A 73B 1555 1555 1.33 LINK C THR A 81 N ASN A 83 1555 1555 1.33 LINK C ARG A 103 N PRO A 105 1555 1555 1.33 LINK C PRO A 132A N ASN A 132B 1555 1555 1.33 LINK C GLY A 209A N GLY A 209B 1555 1555 1.33 LINK C VAL A 210A N PRO A 210B 1555 1555 1.34 LINK C PRO A 210B N LEU A 212 1555 1555 1.33 LINK C GLN A 218A N GLY A 218B 1555 1555 1.33 LINK C LYS A 244A N THR A 244B 1555 1555 1.34 LINK C THR A 244B N GLY A 244C 1555 1555 1.33 LINK C GLY A 283 N ILE A 285 1555 1555 1.33 LINK C GLU A 299 N ASP A 301 1555 1555 1.33 LINK C ARG B 20 N ARG B 22 1555 1555 1.33 LINK C ALA B 46 N ASP B 48 1555 1555 1.33 LINK C PHE B 73A N GLY B 73B 1555 1555 1.33 LINK C THR B 81 N ASN B 83 1555 1555 1.33 LINK C ARG B 103 N PRO B 105 1555 1555 1.34 LINK C PRO B 132A N ASN B 132B 1555 1555 1.33 LINK C GLY B 209A N GLY B 209B 1555 1555 1.33 LINK C VAL B 210A N PRO B 210B 1555 1555 1.33 LINK C PRO B 210B N LEU B 212 1555 1555 1.33 LINK C GLN B 218A N GLY B 218B 1555 1555 1.33 LINK C LYS B 244A N THR B 244B 1555 1555 1.33 LINK C THR B 244B N GLY B 244C 1555 1555 1.33 LINK C GLY B 283 N ILE B 285 1555 1555 1.33 LINK C GLU B 299 N ASP B 301 1555 1555 1.33 CISPEP 1 ASN A 140 PRO A 141 0 -3.82 CISPEP 2 ASN B 140 PRO B 141 0 -3.46 SITE 1 AC1 24 GLY A 30 GLN A 31 ILE A 32 ASP A 53 SITE 2 AC1 24 ILE A 54 THR A 97 ALA A 98 SER A 99 SITE 3 AC1 24 ILE A 119 ILE A 138 ASN A 140 MET A 163 SITE 4 AC1 24 LEU A 167 HIS A 195 GLU A 223 ALA A 246 SITE 5 AC1 24 OXM A 402 HOH A 604 HOH A 607 HOH A 615 SITE 6 AC1 24 HOH A 619 HOH A 640 HOH A 652 HOH A 659 SITE 1 AC2 9 ARG A 109 ASN A 140 LEU A 167 ARG A 171 SITE 2 AC2 9 HIS A 195 TRP A 236 ALA A 246 NAD A 401 SITE 3 AC2 9 HOH A 602 SITE 1 AC3 6 PRO A 201 THR A 203 GLU A 311 LEU A 314 SITE 2 AC3 6 HOH A 693 HOH A 694 SITE 1 AC4 6 PRO A 141 LEU A 142 ASP A 143 VAL A 144 SITE 2 AC4 6 HIS A 195 GLU A 321 SITE 1 AC5 1 PRO A 333 SITE 1 AC6 21 GLY B 30 GLN B 31 ILE B 32 ASP B 53 SITE 2 AC6 21 ILE B 54 THR B 97 ALA B 98 SER B 99 SITE 3 AC6 21 ILE B 119 ILE B 138 ASN B 140 MET B 163 SITE 4 AC6 21 LEU B 167 HIS B 195 ALA B 246 PRO B 250 SITE 5 AC6 21 OXM B 402 HOH B 531 HOH B 532 HOH B 535 SITE 6 AC6 21 HOH B 536 SITE 1 AC7 8 ARG B 109 ASN B 140 LEU B 167 ARG B 171 SITE 2 AC7 8 HIS B 195 TRP B 236 NAD B 401 HOH B 545 SITE 1 AC8 5 VAL B 200 PRO B 201 THR B 203 GLU B 311 SITE 2 AC8 5 LEU B 314 CRYST1 94.816 94.816 185.072 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010547 0.006089 0.000000 0.00000 SCALE2 0.000000 0.012178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005403 0.00000