data_4NDU # _entry.id 4NDU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NDU pdb_00004ndu 10.2210/pdb4ndu/pdb RCSB RCSB083077 ? ? WWPDB D_1000083077 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NDS 'L. decastes alpha-galactosyl-binding lectin, monoclinic crystal form' unspecified PDB 4NDT 'L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form' unspecified PDB 4NDV 'L. decastes alpha-galactosyl-binding lectin in complex with globotriose' unspecified # _pdbx_database_status.entry_id 4NDU _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Van Eerde, A.' 1 'Grahn, E.' 2 'Krengel, U.' 3 # _citation.id primary _citation.title ;Atomic-resolution structure of the alpha-galactosyl binding Lyophyllum decastes lectin reveals a new protein family found in both fungi and plants. ; _citation.journal_abbrev Glycobiology _citation.journal_volume 25 _citation.page_first 492 _citation.page_last 501 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0959-6658 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25504801 _citation.pdbx_database_id_DOI 10.1093/glycob/cwu136 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Eerde, A.' 1 ? primary 'Grahn, E.M.' 2 ? primary 'Winter, H.C.' 3 ? primary 'Goldstein, I.J.' 4 ? primary 'Krengel, U.' 5 ? # _cell.length_a 62.098 _cell.length_b 75.035 _cell.length_c 44.412 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4NDU _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 4NDU _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Alpha-galactosyl-binding lectin' 10291.380 2 ? ? ? ? 2 non-polymer man 'methyl alpha-D-galactopyranoside' 194.182 2 ? ? ? ? 3 water nat water 18.015 319 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _entity_poly.pdbx_seq_one_letter_code_can ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 TRP n 1 4 LYS n 1 5 ALA n 1 6 ASN n 1 7 SER n 1 8 CYS n 1 9 PRO n 1 10 GLY n 1 11 SER n 1 12 ALA n 1 13 PHE n 1 14 GLU n 1 15 SER n 1 16 LYS n 1 17 ASP n 1 18 ARG n 1 19 LEU n 1 20 ARG n 1 21 SER n 1 22 PHE n 1 23 ALA n 1 24 LEU n 1 25 LEU n 1 26 TYR n 1 27 CYS n 1 28 ARG n 1 29 TYR n 1 30 ASN n 1 31 TYR n 1 32 LYS n 1 33 PRO n 1 34 PRO n 1 35 TYR n 1 36 GLY n 1 37 GLN n 1 38 GLY n 1 39 ALA n 1 40 PHE n 1 41 GLY n 1 42 TYR n 1 43 ALA n 1 44 SER n 1 45 ALA n 1 46 VAL n 1 47 SER n 1 48 THR n 1 49 HIS n 1 50 GLY n 1 51 TRP n 1 52 GLU n 1 53 THR n 1 54 GLU n 1 55 ALA n 1 56 GLN n 1 57 CYS n 1 58 ILE n 1 59 ASN n 1 60 THR n 1 61 PHE n 1 62 GLU n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 THR n 1 67 SER n 1 68 CYS n 1 69 HIS n 1 70 GLY n 1 71 GLN n 1 72 SER n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 THR n 1 77 LEU n 1 78 GLU n 1 79 LEU n 1 80 ASN n 1 81 SER n 1 82 GLY n 1 83 ARG n 1 84 LEU n 1 85 SER n 1 86 LEU n 1 87 ALA n 1 88 PHE n 1 89 GLY n 1 90 ASN n 1 91 CYS n 1 92 GLU n 1 93 GLU n 1 94 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Fried chicken mushroom' _entity_src_nat.pdbx_organism_scientific 'Lyophyllum decastes' _entity_src_nat.pdbx_ncbi_taxonomy_id 64660 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ 'fruiting bodies' _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGBL_LYODE _struct_ref.pdbx_db_accession A7UNK4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN SGRLSLAFGNCEEL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NDU A 1 ? 94 ? A7UNK4 1 ? 94 ? 1 94 2 1 4NDU B 1 ? 94 ? A7UNK4 1 ? 94 ? 1 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMG D-saccharide n 'methyl alpha-D-galactopyranoside' 'ALPHA-METHYL-D-GALACTOSIDE; methyl alpha-D-galactoside; methyl D-galactoside; methyl galactoside' 'C7 H14 O6' 194.182 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NDU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.2 M lithium sulfate, 0.1 M Tris-HCl, 30% w/v PEG4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2007-03-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'diamond(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_wavelength_list 0.931 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 # _reflns.entry_id 4NDU _reflns.d_resolution_high 1.300 _reflns.number_obs 50868 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.percent_possible_obs 98.5 _reflns.B_iso_Wilson_estimate 9.44 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.number_all 50871 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.300 1.380 35427 ? 7972 0.644 2.250 ? ? ? ? ? 97.2 1 1 1.380 1.470 33701 ? 7570 0.423 3.470 ? ? ? ? ? 97.9 2 1 1.470 1.590 31569 ? 7093 0.251 5.780 ? ? ? ? ? 98.3 3 1 1.590 1.740 29237 ? 6569 0.162 8.740 ? ? ? ? ? 98.9 4 1 1.740 1.950 26612 ? 5990 0.090 14.580 ? ? ? ? ? 98.9 5 1 1.950 2.240 23523 ? 5331 0.048 25.400 ? ? ? ? ? 99.4 6 1 2.240 2.740 20065 ? 4575 0.034 33.650 ? ? ? ? ? 99.5 7 1 2.740 3.830 15585 ? 3610 0.022 47.700 ? ? ? ? ? 99.7 8 1 3.830 ? 8756 ? 2158 0.018 54.360 ? ? ? ? ? 97.8 9 1 # _refine.entry_id 4NDU _refine.ls_d_res_high 1.301 _refine.ls_d_res_low 18.762 _refine.pdbx_ls_sigma_F 1.990 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.5 _refine.ls_number_reflns_obs 50851 _refine.ls_number_reflns_all 50868 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1751 _refine.ls_R_factor_R_work 0.1732 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2097 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 2590 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 13.3032 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4NDT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 51.900 _refine.B_iso_min 2.590 _refine.pdbx_overall_phase_error 22.1600 _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1444 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 319 _refine_hist.number_atoms_total 1789 _refine_hist.d_res_high 1.301 _refine_hist.d_res_low 18.762 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1642 0.011 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2233 1.486 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 232 0.097 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 298 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 590 12.520 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.301 1.3264 18 97.0 2578 . 0.2524 0.3048 . 136 . 2714 . . 'X-RAY DIFFRACTION' 1.3264 1.3534 18 97.0 2627 . 0.2147 0.2622 . 158 . 2785 . . 'X-RAY DIFFRACTION' 1.3534 1.3828 18 97.0 2593 . 0.2021 0.2530 . 151 . 2744 . . 'X-RAY DIFFRACTION' 1.3828 1.4150 18 98.0 2655 . 0.1995 0.2969 . 123 . 2778 . . 'X-RAY DIFFRACTION' 1.4150 1.4504 18 98.0 2645 . 0.1824 0.2184 . 132 . 2777 . . 'X-RAY DIFFRACTION' 1.4504 1.4896 18 98.0 2631 . 0.1692 0.2398 . 132 . 2763 . . 'X-RAY DIFFRACTION' 1.4896 1.5334 18 98.0 2667 . 0.1661 0.2195 . 143 . 2810 . . 'X-RAY DIFFRACTION' 1.5334 1.5828 18 99.0 2634 . 0.1520 0.1844 . 137 . 2771 . . 'X-RAY DIFFRACTION' 1.5828 1.6394 18 99.0 2680 . 0.1547 0.2051 . 138 . 2818 . . 'X-RAY DIFFRACTION' 1.6394 1.7050 18 99.0 2655 . 0.1524 0.2123 . 147 . 2802 . . 'X-RAY DIFFRACTION' 1.7050 1.7825 18 99.0 2670 . 0.1549 0.1892 . 154 . 2824 . . 'X-RAY DIFFRACTION' 1.7825 1.8764 18 99.0 2684 . 0.1612 0.2160 . 149 . 2833 . . 'X-RAY DIFFRACTION' 1.8764 1.9939 18 99.0 2685 . 0.1660 0.1943 . 143 . 2828 . . 'X-RAY DIFFRACTION' 1.9939 2.1476 18 99.0 2709 . 0.1604 0.1901 . 139 . 2848 . . 'X-RAY DIFFRACTION' 2.1476 2.3634 18 99.0 2746 . 0.1682 0.2222 . 141 . 2887 . . 'X-RAY DIFFRACTION' 2.3634 2.7045 18 99.0 2748 . 0.1925 0.2241 . 142 . 2890 . . 'X-RAY DIFFRACTION' 2.7045 3.4040 18 100.0 2772 . 0.1871 0.2088 . 162 . 2934 . . 'X-RAY DIFFRACTION' 3.4040 18.7636 18 99.0 2882 . 0.1604 0.1777 . 163 . 3045 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NDU _struct.title 'Crystal structure of L. decastes alpha-galactosyl-binding lectin in complex with alpha-methylgalactoside' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NDU _struct_keywords.text 'lectin, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? TYR A 31 ? SER A 15 TYR A 31 1 ? 17 HELX_P HELX_P2 2 THR A 53 ? HIS A 69 ? THR A 53 HIS A 69 1 ? 17 HELX_P HELX_P3 3 SER B 15 ? TYR B 31 ? SER B 15 TYR B 31 1 ? 17 HELX_P HELX_P4 4 THR B 53 ? HIS B 69 ? THR B 53 HIS B 69 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 2 A CYS 68 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf2 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 8 A CYS 91 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf3 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 27 A CYS 57 1_555 ? ? ? ? ? ? ? 2.073 ? ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 68 SG ? ? B CYS 2 B CYS 68 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 8 B CYS 91 1_555 ? ? ? ? ? ? ? 2.063 ? ? disulf6 disulf ? ? B CYS 27 SG ? ? ? 1_555 B CYS 57 SG ? ? B CYS 27 B CYS 57 1_555 ? ? ? ? ? ? ? 2.087 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 33 A . ? PRO 33 A PRO 34 A ? PRO 34 A 1 7.77 2 PRO 33 B . ? PRO 33 B PRO 34 B ? PRO 34 B 1 5.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 35 ? PHE A 40 ? TYR A 35 PHE A 40 A 2 ALA A 43 ? THR A 48 ? ALA A 43 THR A 48 A 3 GLY A 82 ? ALA A 87 ? GLY A 82 ALA A 87 A 4 GLY A 74 ? LEU A 79 ? GLY A 74 LEU A 79 B 1 TYR B 35 ? PHE B 40 ? TYR B 35 PHE B 40 B 2 ALA B 43 ? THR B 48 ? ALA B 43 THR B 48 B 3 GLY B 82 ? ALA B 87 ? GLY B 82 ALA B 87 B 4 GLY B 74 ? LEU B 79 ? GLY B 74 LEU B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 36 ? N GLY A 36 O SER A 47 ? O SER A 47 A 2 3 N SER A 44 ? N SER A 44 O ALA A 87 ? O ALA A 87 A 3 4 O LEU A 84 ? O LEU A 84 N LEU A 77 ? N LEU A 77 B 1 2 N GLY B 36 ? N GLY B 36 O SER B 47 ? O SER B 47 B 2 3 N SER B 44 ? N SER B 44 O ALA B 87 ? O ALA B 87 B 3 4 O LEU B 84 ? O LEU B 84 N LEU B 77 ? N LEU B 77 # _atom_sites.entry_id 4NDU _atom_sites.fract_transf_matrix[1][1] 0.016104 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013327 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022516 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LEU 94 94 94 LEU LEU A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 TRP 3 3 3 TRP TRP B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ASN 6 6 6 ASN ASN B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 CYS 8 8 8 CYS CYS B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 TYR 26 26 26 TYR TYR B . n B 1 27 CYS 27 27 27 CYS CYS B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 TYR 31 31 31 TYR TYR B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 PRO 33 33 33 PRO PRO B . n B 1 34 PRO 34 34 34 PRO PRO B . n B 1 35 TYR 35 35 35 TYR TYR B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 PHE 40 40 40 PHE PHE B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 HIS 49 49 49 HIS HIS B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 TRP 51 51 51 TRP TRP B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 THR 53 53 53 THR THR B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 CYS 57 57 57 CYS CYS B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 PHE 61 61 61 PHE PHE B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLN 63 63 63 GLN GLN B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 ILE 65 65 65 ILE ILE B . n B 1 66 THR 66 66 66 THR THR B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 CYS 68 68 68 CYS CYS B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 GLN 71 71 71 GLN GLN B . n B 1 72 SER 72 72 72 SER SER B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 THR 76 76 76 THR THR B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 SER 81 81 81 SER SER B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 ASN 90 90 90 ASN ASN B . n B 1 91 CYS 91 91 91 CYS CYS B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 LEU 94 94 94 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMG 1 101 1476 AMG AMG A . D 2 AMG 1 101 1476 AMG AMG B . E 3 HOH 1 201 2 HOH HOH A . E 3 HOH 2 202 4 HOH HOH A . E 3 HOH 3 203 5 HOH HOH A . E 3 HOH 4 204 7 HOH HOH A . E 3 HOH 5 205 9 HOH HOH A . E 3 HOH 6 206 10 HOH HOH A . E 3 HOH 7 207 11 HOH HOH A . E 3 HOH 8 208 15 HOH HOH A . E 3 HOH 9 209 17 HOH HOH A . E 3 HOH 10 210 19 HOH HOH A . E 3 HOH 11 211 23 HOH HOH A . E 3 HOH 12 212 24 HOH HOH A . E 3 HOH 13 213 25 HOH HOH A . E 3 HOH 14 214 27 HOH HOH A . E 3 HOH 15 215 28 HOH HOH A . E 3 HOH 16 216 31 HOH HOH A . E 3 HOH 17 217 33 HOH HOH A . E 3 HOH 18 218 38 HOH HOH A . E 3 HOH 19 219 39 HOH HOH A . E 3 HOH 20 220 40 HOH HOH A . E 3 HOH 21 221 43 HOH HOH A . E 3 HOH 22 222 44 HOH HOH A . E 3 HOH 23 223 45 HOH HOH A . E 3 HOH 24 224 46 HOH HOH A . E 3 HOH 25 225 50 HOH HOH A . E 3 HOH 26 226 53 HOH HOH A . E 3 HOH 27 227 55 HOH HOH A . E 3 HOH 28 228 56 HOH HOH A . E 3 HOH 29 229 58 HOH HOH A . E 3 HOH 30 230 60 HOH HOH A . E 3 HOH 31 231 61 HOH HOH A . E 3 HOH 32 232 63 HOH HOH A . E 3 HOH 33 233 64 HOH HOH A . E 3 HOH 34 234 67 HOH HOH A . E 3 HOH 35 235 68 HOH HOH A . E 3 HOH 36 236 70 HOH HOH A . E 3 HOH 37 237 72 HOH HOH A . E 3 HOH 38 238 77 HOH HOH A . E 3 HOH 39 239 79 HOH HOH A . E 3 HOH 40 240 84 HOH HOH A . E 3 HOH 41 241 87 HOH HOH A . E 3 HOH 42 242 89 HOH HOH A . E 3 HOH 43 243 90 HOH HOH A . E 3 HOH 44 244 91 HOH HOH A . E 3 HOH 45 245 92 HOH HOH A . E 3 HOH 46 246 95 HOH HOH A . E 3 HOH 47 247 98 HOH HOH A . E 3 HOH 48 248 100 HOH HOH A . E 3 HOH 49 249 101 HOH HOH A . E 3 HOH 50 250 103 HOH HOH A . E 3 HOH 51 251 106 HOH HOH A . E 3 HOH 52 252 108 HOH HOH A . E 3 HOH 53 253 109 HOH HOH A . E 3 HOH 54 254 110 HOH HOH A . E 3 HOH 55 255 114 HOH HOH A . E 3 HOH 56 256 115 HOH HOH A . E 3 HOH 57 257 116 HOH HOH A . E 3 HOH 58 258 118 HOH HOH A . E 3 HOH 59 259 119 HOH HOH A . E 3 HOH 60 260 121 HOH HOH A . E 3 HOH 61 261 123 HOH HOH A . E 3 HOH 62 262 127 HOH HOH A . E 3 HOH 63 263 128 HOH HOH A . E 3 HOH 64 264 129 HOH HOH A . E 3 HOH 65 265 131 HOH HOH A . E 3 HOH 66 266 132 HOH HOH A . E 3 HOH 67 267 133 HOH HOH A . E 3 HOH 68 268 135 HOH HOH A . E 3 HOH 69 269 136 HOH HOH A . E 3 HOH 70 270 139 HOH HOH A . E 3 HOH 71 271 141 HOH HOH A . E 3 HOH 72 272 147 HOH HOH A . E 3 HOH 73 273 148 HOH HOH A . E 3 HOH 74 274 152 HOH HOH A . E 3 HOH 75 275 154 HOH HOH A . E 3 HOH 76 276 160 HOH HOH A . E 3 HOH 77 277 162 HOH HOH A . E 3 HOH 78 278 166 HOH HOH A . E 3 HOH 79 279 169 HOH HOH A . E 3 HOH 80 280 172 HOH HOH A . E 3 HOH 81 281 173 HOH HOH A . E 3 HOH 82 282 174 HOH HOH A . E 3 HOH 83 283 175 HOH HOH A . E 3 HOH 84 284 179 HOH HOH A . E 3 HOH 85 285 182 HOH HOH A . E 3 HOH 86 286 183 HOH HOH A . E 3 HOH 87 287 187 HOH HOH A . E 3 HOH 88 288 189 HOH HOH A . E 3 HOH 89 289 198 HOH HOH A . E 3 HOH 90 290 202 HOH HOH A . E 3 HOH 91 291 204 HOH HOH A . E 3 HOH 92 292 206 HOH HOH A . E 3 HOH 93 293 210 HOH HOH A . E 3 HOH 94 294 211 HOH HOH A . E 3 HOH 95 295 212 HOH HOH A . E 3 HOH 96 296 216 HOH HOH A . E 3 HOH 97 297 217 HOH HOH A . E 3 HOH 98 298 219 HOH HOH A . E 3 HOH 99 299 220 HOH HOH A . E 3 HOH 100 300 224 HOH HOH A . E 3 HOH 101 301 225 HOH HOH A . E 3 HOH 102 302 226 HOH HOH A . E 3 HOH 103 303 229 HOH HOH A . E 3 HOH 104 304 230 HOH HOH A . E 3 HOH 105 305 231 HOH HOH A . E 3 HOH 106 306 235 HOH HOH A . E 3 HOH 107 307 239 HOH HOH A . E 3 HOH 108 308 241 HOH HOH A . E 3 HOH 109 309 243 HOH HOH A . E 3 HOH 110 310 246 HOH HOH A . E 3 HOH 111 311 251 HOH HOH A . E 3 HOH 112 312 253 HOH HOH A . E 3 HOH 113 313 254 HOH HOH A . E 3 HOH 114 314 255 HOH HOH A . E 3 HOH 115 315 256 HOH HOH A . E 3 HOH 116 316 261 HOH HOH A . E 3 HOH 117 317 263 HOH HOH A . E 3 HOH 118 318 265 HOH HOH A . E 3 HOH 119 319 269 HOH HOH A . E 3 HOH 120 320 272 HOH HOH A . E 3 HOH 121 321 273 HOH HOH A . E 3 HOH 122 322 274 HOH HOH A . E 3 HOH 123 323 275 HOH HOH A . E 3 HOH 124 324 277 HOH HOH A . E 3 HOH 125 325 281 HOH HOH A . E 3 HOH 126 326 285 HOH HOH A . E 3 HOH 127 327 288 HOH HOH A . E 3 HOH 128 328 294 HOH HOH A . E 3 HOH 129 329 296 HOH HOH A . E 3 HOH 130 330 307 HOH HOH A . E 3 HOH 131 331 313 HOH HOH A . E 3 HOH 132 332 316 HOH HOH A . E 3 HOH 133 333 317 HOH HOH A . E 3 HOH 134 334 325 HOH HOH A . E 3 HOH 135 335 331 HOH HOH A . E 3 HOH 136 336 337 HOH HOH A . E 3 HOH 137 337 339 HOH HOH A . E 3 HOH 138 338 342 HOH HOH A . E 3 HOH 139 339 349 HOH HOH A . E 3 HOH 140 340 365 HOH HOH A . E 3 HOH 141 341 367 HOH HOH A . E 3 HOH 142 342 371 HOH HOH A . E 3 HOH 143 343 372 HOH HOH A . E 3 HOH 144 344 377 HOH HOH A . E 3 HOH 145 345 378 HOH HOH A . E 3 HOH 146 346 379 HOH HOH A . E 3 HOH 147 347 380 HOH HOH A . E 3 HOH 148 348 381 HOH HOH A . E 3 HOH 149 349 388 HOH HOH A . E 3 HOH 150 350 389 HOH HOH A . E 3 HOH 151 351 390 HOH HOH A . E 3 HOH 152 352 391 HOH HOH A . F 3 HOH 1 201 99 HOH HOH B . F 3 HOH 2 202 330 HOH HOH B . F 3 HOH 3 203 1 HOH HOH B . F 3 HOH 4 204 3 HOH HOH B . F 3 HOH 5 205 6 HOH HOH B . F 3 HOH 6 206 8 HOH HOH B . F 3 HOH 7 207 12 HOH HOH B . F 3 HOH 8 208 13 HOH HOH B . F 3 HOH 9 209 14 HOH HOH B . F 3 HOH 10 210 16 HOH HOH B . F 3 HOH 11 211 18 HOH HOH B . F 3 HOH 12 212 20 HOH HOH B . F 3 HOH 13 213 21 HOH HOH B . F 3 HOH 14 214 22 HOH HOH B . F 3 HOH 15 215 26 HOH HOH B . F 3 HOH 16 216 29 HOH HOH B . F 3 HOH 17 217 30 HOH HOH B . F 3 HOH 18 218 32 HOH HOH B . F 3 HOH 19 219 34 HOH HOH B . F 3 HOH 20 220 35 HOH HOH B . F 3 HOH 21 221 36 HOH HOH B . F 3 HOH 22 222 37 HOH HOH B . F 3 HOH 23 223 41 HOH HOH B . F 3 HOH 24 224 42 HOH HOH B . F 3 HOH 25 225 47 HOH HOH B . F 3 HOH 26 226 48 HOH HOH B . F 3 HOH 27 227 49 HOH HOH B . F 3 HOH 28 228 51 HOH HOH B . F 3 HOH 29 229 52 HOH HOH B . F 3 HOH 30 230 54 HOH HOH B . F 3 HOH 31 231 57 HOH HOH B . F 3 HOH 32 232 59 HOH HOH B . F 3 HOH 33 233 62 HOH HOH B . F 3 HOH 34 234 65 HOH HOH B . F 3 HOH 35 235 66 HOH HOH B . F 3 HOH 36 236 69 HOH HOH B . F 3 HOH 37 237 71 HOH HOH B . F 3 HOH 38 238 73 HOH HOH B . F 3 HOH 39 239 74 HOH HOH B . F 3 HOH 40 240 75 HOH HOH B . F 3 HOH 41 241 76 HOH HOH B . F 3 HOH 42 242 78 HOH HOH B . F 3 HOH 43 243 80 HOH HOH B . F 3 HOH 44 244 81 HOH HOH B . F 3 HOH 45 245 82 HOH HOH B . F 3 HOH 46 246 83 HOH HOH B . F 3 HOH 47 247 85 HOH HOH B . F 3 HOH 48 248 86 HOH HOH B . F 3 HOH 49 249 88 HOH HOH B . F 3 HOH 50 250 93 HOH HOH B . F 3 HOH 51 251 94 HOH HOH B . F 3 HOH 52 252 96 HOH HOH B . F 3 HOH 53 253 102 HOH HOH B . F 3 HOH 54 254 104 HOH HOH B . F 3 HOH 55 255 105 HOH HOH B . F 3 HOH 56 256 107 HOH HOH B . F 3 HOH 57 257 111 HOH HOH B . F 3 HOH 58 258 112 HOH HOH B . F 3 HOH 59 259 113 HOH HOH B . F 3 HOH 60 260 117 HOH HOH B . F 3 HOH 61 261 120 HOH HOH B . F 3 HOH 62 262 122 HOH HOH B . F 3 HOH 63 263 124 HOH HOH B . F 3 HOH 64 264 125 HOH HOH B . F 3 HOH 65 265 126 HOH HOH B . F 3 HOH 66 266 130 HOH HOH B . F 3 HOH 67 267 134 HOH HOH B . F 3 HOH 68 268 137 HOH HOH B . F 3 HOH 69 269 138 HOH HOH B . F 3 HOH 70 270 140 HOH HOH B . F 3 HOH 71 271 143 HOH HOH B . F 3 HOH 72 272 144 HOH HOH B . F 3 HOH 73 273 145 HOH HOH B . F 3 HOH 74 274 149 HOH HOH B . F 3 HOH 75 275 150 HOH HOH B . F 3 HOH 76 276 151 HOH HOH B . F 3 HOH 77 277 153 HOH HOH B . F 3 HOH 78 278 155 HOH HOH B . F 3 HOH 79 279 156 HOH HOH B . F 3 HOH 80 280 157 HOH HOH B . F 3 HOH 81 281 159 HOH HOH B . F 3 HOH 82 282 163 HOH HOH B . F 3 HOH 83 283 164 HOH HOH B . F 3 HOH 84 284 165 HOH HOH B . F 3 HOH 85 285 167 HOH HOH B . F 3 HOH 86 286 168 HOH HOH B . F 3 HOH 87 287 170 HOH HOH B . F 3 HOH 88 288 171 HOH HOH B . F 3 HOH 89 289 176 HOH HOH B . F 3 HOH 90 290 177 HOH HOH B . F 3 HOH 91 291 178 HOH HOH B . F 3 HOH 92 292 180 HOH HOH B . F 3 HOH 93 293 181 HOH HOH B . F 3 HOH 94 294 184 HOH HOH B . F 3 HOH 95 295 185 HOH HOH B . F 3 HOH 96 296 186 HOH HOH B . F 3 HOH 97 297 188 HOH HOH B . F 3 HOH 98 298 190 HOH HOH B . F 3 HOH 99 299 191 HOH HOH B . F 3 HOH 100 300 192 HOH HOH B . F 3 HOH 101 301 194 HOH HOH B . F 3 HOH 102 302 195 HOH HOH B . F 3 HOH 103 303 196 HOH HOH B . F 3 HOH 104 304 200 HOH HOH B . F 3 HOH 105 305 201 HOH HOH B . F 3 HOH 106 306 205 HOH HOH B . F 3 HOH 107 307 207 HOH HOH B . F 3 HOH 108 308 208 HOH HOH B . F 3 HOH 109 309 209 HOH HOH B . F 3 HOH 110 310 213 HOH HOH B . F 3 HOH 111 311 214 HOH HOH B . F 3 HOH 112 312 218 HOH HOH B . F 3 HOH 113 313 221 HOH HOH B . F 3 HOH 114 314 222 HOH HOH B . F 3 HOH 115 315 227 HOH HOH B . F 3 HOH 116 316 228 HOH HOH B . F 3 HOH 117 317 232 HOH HOH B . F 3 HOH 118 318 233 HOH HOH B . F 3 HOH 119 319 234 HOH HOH B . F 3 HOH 120 320 238 HOH HOH B . F 3 HOH 121 321 242 HOH HOH B . F 3 HOH 122 322 247 HOH HOH B . F 3 HOH 123 323 248 HOH HOH B . F 3 HOH 124 324 250 HOH HOH B . F 3 HOH 125 325 252 HOH HOH B . F 3 HOH 126 326 257 HOH HOH B . F 3 HOH 127 327 258 HOH HOH B . F 3 HOH 128 328 262 HOH HOH B . F 3 HOH 129 329 266 HOH HOH B . F 3 HOH 130 330 268 HOH HOH B . F 3 HOH 131 331 271 HOH HOH B . F 3 HOH 132 332 279 HOH HOH B . F 3 HOH 133 333 282 HOH HOH B . F 3 HOH 134 334 283 HOH HOH B . F 3 HOH 135 335 286 HOH HOH B . F 3 HOH 136 336 287 HOH HOH B . F 3 HOH 137 337 292 HOH HOH B . F 3 HOH 138 338 293 HOH HOH B . F 3 HOH 139 339 295 HOH HOH B . F 3 HOH 140 340 299 HOH HOH B . F 3 HOH 141 341 301 HOH HOH B . F 3 HOH 142 342 302 HOH HOH B . F 3 HOH 143 343 309 HOH HOH B . F 3 HOH 144 344 310 HOH HOH B . F 3 HOH 145 345 314 HOH HOH B . F 3 HOH 146 346 319 HOH HOH B . F 3 HOH 147 347 320 HOH HOH B . F 3 HOH 148 348 323 HOH HOH B . F 3 HOH 149 349 326 HOH HOH B . F 3 HOH 150 350 328 HOH HOH B . F 3 HOH 151 351 329 HOH HOH B . F 3 HOH 152 352 333 HOH HOH B . F 3 HOH 153 353 334 HOH HOH B . F 3 HOH 154 354 336 HOH HOH B . F 3 HOH 155 355 340 HOH HOH B . F 3 HOH 156 356 345 HOH HOH B . F 3 HOH 157 357 346 HOH HOH B . F 3 HOH 158 358 347 HOH HOH B . F 3 HOH 159 359 353 HOH HOH B . F 3 HOH 160 360 354 HOH HOH B . F 3 HOH 161 361 357 HOH HOH B . F 3 HOH 162 362 370 HOH HOH B . F 3 HOH 163 363 376 HOH HOH B . F 3 HOH 164 364 382 HOH HOH B . F 3 HOH 165 365 383 HOH HOH B . F 3 HOH 166 366 384 HOH HOH B . F 3 HOH 167 367 385 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -5 ? 1 'SSA (A^2)' 8240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2015-04-08 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-09-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_site 6 4 'Structure model' struct_site_gen 7 5 'Structure model' chem_comp 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' database_2 11 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.mon_nstd_flag' 2 4 'Structure model' '_chem_comp.name' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 5 'Structure model' '_chem_comp.pdbx_synonyms' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 DNA . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 XDS . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 49 ? ? 75.81 -53.14 2 1 SER A 81 ? ? 73.60 -24.36 3 1 HIS B 49 ? ? 77.22 -45.57 4 1 SER B 81 ? ? 72.82 -23.78 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMG C1 C N S 14 AMG C2 C N R 15 AMG C3 C N S 16 AMG C4 C N R 17 AMG C5 C N R 18 AMG C6 C N N 19 AMG C7 C N N 20 AMG O1 O N N 21 AMG O2 O N N 22 AMG O3 O N N 23 AMG O4 O N N 24 AMG O5 O N N 25 AMG O6 O N N 26 AMG H1 H N N 27 AMG H2 H N N 28 AMG H3 H N N 29 AMG H4 H N N 30 AMG H5 H N N 31 AMG H61 H N N 32 AMG H62 H N N 33 AMG H71 H N N 34 AMG H72 H N N 35 AMG H73 H N N 36 AMG HO2 H N N 37 AMG HO3 H N N 38 AMG HO4 H N N 39 AMG HO6 H N N 40 ARG N N N N 41 ARG CA C N S 42 ARG C C N N 43 ARG O O N N 44 ARG CB C N N 45 ARG CG C N N 46 ARG CD C N N 47 ARG NE N N N 48 ARG CZ C N N 49 ARG NH1 N N N 50 ARG NH2 N N N 51 ARG OXT O N N 52 ARG H H N N 53 ARG H2 H N N 54 ARG HA H N N 55 ARG HB2 H N N 56 ARG HB3 H N N 57 ARG HG2 H N N 58 ARG HG3 H N N 59 ARG HD2 H N N 60 ARG HD3 H N N 61 ARG HE H N N 62 ARG HH11 H N N 63 ARG HH12 H N N 64 ARG HH21 H N N 65 ARG HH22 H N N 66 ARG HXT H N N 67 ASN N N N N 68 ASN CA C N S 69 ASN C C N N 70 ASN O O N N 71 ASN CB C N N 72 ASN CG C N N 73 ASN OD1 O N N 74 ASN ND2 N N N 75 ASN OXT O N N 76 ASN H H N N 77 ASN H2 H N N 78 ASN HA H N N 79 ASN HB2 H N N 80 ASN HB3 H N N 81 ASN HD21 H N N 82 ASN HD22 H N N 83 ASN HXT H N N 84 ASP N N N N 85 ASP CA C N S 86 ASP C C N N 87 ASP O O N N 88 ASP CB C N N 89 ASP CG C N N 90 ASP OD1 O N N 91 ASP OD2 O N N 92 ASP OXT O N N 93 ASP H H N N 94 ASP H2 H N N 95 ASP HA H N N 96 ASP HB2 H N N 97 ASP HB3 H N N 98 ASP HD2 H N N 99 ASP HXT H N N 100 CYS N N N N 101 CYS CA C N R 102 CYS C C N N 103 CYS O O N N 104 CYS CB C N N 105 CYS SG S N N 106 CYS OXT O N N 107 CYS H H N N 108 CYS H2 H N N 109 CYS HA H N N 110 CYS HB2 H N N 111 CYS HB3 H N N 112 CYS HG H N N 113 CYS HXT H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 PHE N N N N 257 PHE CA C N S 258 PHE C C N N 259 PHE O O N N 260 PHE CB C N N 261 PHE CG C Y N 262 PHE CD1 C Y N 263 PHE CD2 C Y N 264 PHE CE1 C Y N 265 PHE CE2 C Y N 266 PHE CZ C Y N 267 PHE OXT O N N 268 PHE H H N N 269 PHE H2 H N N 270 PHE HA H N N 271 PHE HB2 H N N 272 PHE HB3 H N N 273 PHE HD1 H N N 274 PHE HD2 H N N 275 PHE HE1 H N N 276 PHE HE2 H N N 277 PHE HZ H N N 278 PHE HXT H N N 279 PRO N N N N 280 PRO CA C N S 281 PRO C C N N 282 PRO O O N N 283 PRO CB C N N 284 PRO CG C N N 285 PRO CD C N N 286 PRO OXT O N N 287 PRO H H N N 288 PRO HA H N N 289 PRO HB2 H N N 290 PRO HB3 H N N 291 PRO HG2 H N N 292 PRO HG3 H N N 293 PRO HD2 H N N 294 PRO HD3 H N N 295 PRO HXT H N N 296 SER N N N N 297 SER CA C N S 298 SER C C N N 299 SER O O N N 300 SER CB C N N 301 SER OG O N N 302 SER OXT O N N 303 SER H H N N 304 SER H2 H N N 305 SER HA H N N 306 SER HB2 H N N 307 SER HB3 H N N 308 SER HG H N N 309 SER HXT H N N 310 THR N N N N 311 THR CA C N S 312 THR C C N N 313 THR O O N N 314 THR CB C N R 315 THR OG1 O N N 316 THR CG2 C N N 317 THR OXT O N N 318 THR H H N N 319 THR H2 H N N 320 THR HA H N N 321 THR HB H N N 322 THR HG1 H N N 323 THR HG21 H N N 324 THR HG22 H N N 325 THR HG23 H N N 326 THR HXT H N N 327 TRP N N N N 328 TRP CA C N S 329 TRP C C N N 330 TRP O O N N 331 TRP CB C N N 332 TRP CG C Y N 333 TRP CD1 C Y N 334 TRP CD2 C Y N 335 TRP NE1 N Y N 336 TRP CE2 C Y N 337 TRP CE3 C Y N 338 TRP CZ2 C Y N 339 TRP CZ3 C Y N 340 TRP CH2 C Y N 341 TRP OXT O N N 342 TRP H H N N 343 TRP H2 H N N 344 TRP HA H N N 345 TRP HB2 H N N 346 TRP HB3 H N N 347 TRP HD1 H N N 348 TRP HE1 H N N 349 TRP HE3 H N N 350 TRP HZ2 H N N 351 TRP HZ3 H N N 352 TRP HH2 H N N 353 TRP HXT H N N 354 TYR N N N N 355 TYR CA C N S 356 TYR C C N N 357 TYR O O N N 358 TYR CB C N N 359 TYR CG C Y N 360 TYR CD1 C Y N 361 TYR CD2 C Y N 362 TYR CE1 C Y N 363 TYR CE2 C Y N 364 TYR CZ C Y N 365 TYR OH O N N 366 TYR OXT O N N 367 TYR H H N N 368 TYR H2 H N N 369 TYR HA H N N 370 TYR HB2 H N N 371 TYR HB3 H N N 372 TYR HD1 H N N 373 TYR HD2 H N N 374 TYR HE1 H N N 375 TYR HE2 H N N 376 TYR HH H N N 377 TYR HXT H N N 378 VAL N N N N 379 VAL CA C N S 380 VAL C C N N 381 VAL O O N N 382 VAL CB C N N 383 VAL CG1 C N N 384 VAL CG2 C N N 385 VAL OXT O N N 386 VAL H H N N 387 VAL H2 H N N 388 VAL HA H N N 389 VAL HB H N N 390 VAL HG11 H N N 391 VAL HG12 H N N 392 VAL HG13 H N N 393 VAL HG21 H N N 394 VAL HG22 H N N 395 VAL HG23 H N N 396 VAL HXT H N N 397 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMG C1 C2 sing N N 13 AMG C1 O1 sing N N 14 AMG C1 O5 sing N N 15 AMG C1 H1 sing N N 16 AMG C2 C3 sing N N 17 AMG C2 O2 sing N N 18 AMG C2 H2 sing N N 19 AMG C3 C4 sing N N 20 AMG C3 O3 sing N N 21 AMG C3 H3 sing N N 22 AMG C4 C5 sing N N 23 AMG C4 O4 sing N N 24 AMG C4 H4 sing N N 25 AMG C5 C6 sing N N 26 AMG C5 O5 sing N N 27 AMG C5 H5 sing N N 28 AMG C6 O6 sing N N 29 AMG C6 H61 sing N N 30 AMG C6 H62 sing N N 31 AMG C7 O1 sing N N 32 AMG C7 H71 sing N N 33 AMG C7 H72 sing N N 34 AMG C7 H73 sing N N 35 AMG O2 HO2 sing N N 36 AMG O3 HO3 sing N N 37 AMG O4 HO4 sing N N 38 AMG O6 HO6 sing N N 39 ARG N CA sing N N 40 ARG N H sing N N 41 ARG N H2 sing N N 42 ARG CA C sing N N 43 ARG CA CB sing N N 44 ARG CA HA sing N N 45 ARG C O doub N N 46 ARG C OXT sing N N 47 ARG CB CG sing N N 48 ARG CB HB2 sing N N 49 ARG CB HB3 sing N N 50 ARG CG CD sing N N 51 ARG CG HG2 sing N N 52 ARG CG HG3 sing N N 53 ARG CD NE sing N N 54 ARG CD HD2 sing N N 55 ARG CD HD3 sing N N 56 ARG NE CZ sing N N 57 ARG NE HE sing N N 58 ARG CZ NH1 sing N N 59 ARG CZ NH2 doub N N 60 ARG NH1 HH11 sing N N 61 ARG NH1 HH12 sing N N 62 ARG NH2 HH21 sing N N 63 ARG NH2 HH22 sing N N 64 ARG OXT HXT sing N N 65 ASN N CA sing N N 66 ASN N H sing N N 67 ASN N H2 sing N N 68 ASN CA C sing N N 69 ASN CA CB sing N N 70 ASN CA HA sing N N 71 ASN C O doub N N 72 ASN C OXT sing N N 73 ASN CB CG sing N N 74 ASN CB HB2 sing N N 75 ASN CB HB3 sing N N 76 ASN CG OD1 doub N N 77 ASN CG ND2 sing N N 78 ASN ND2 HD21 sing N N 79 ASN ND2 HD22 sing N N 80 ASN OXT HXT sing N N 81 ASP N CA sing N N 82 ASP N H sing N N 83 ASP N H2 sing N N 84 ASP CA C sing N N 85 ASP CA CB sing N N 86 ASP CA HA sing N N 87 ASP C O doub N N 88 ASP C OXT sing N N 89 ASP CB CG sing N N 90 ASP CB HB2 sing N N 91 ASP CB HB3 sing N N 92 ASP CG OD1 doub N N 93 ASP CG OD2 sing N N 94 ASP OD2 HD2 sing N N 95 ASP OXT HXT sing N N 96 CYS N CA sing N N 97 CYS N H sing N N 98 CYS N H2 sing N N 99 CYS CA C sing N N 100 CYS CA CB sing N N 101 CYS CA HA sing N N 102 CYS C O doub N N 103 CYS C OXT sing N N 104 CYS CB SG sing N N 105 CYS CB HB2 sing N N 106 CYS CB HB3 sing N N 107 CYS SG HG sing N N 108 CYS OXT HXT sing N N 109 GLN N CA sing N N 110 GLN N H sing N N 111 GLN N H2 sing N N 112 GLN CA C sing N N 113 GLN CA CB sing N N 114 GLN CA HA sing N N 115 GLN C O doub N N 116 GLN C OXT sing N N 117 GLN CB CG sing N N 118 GLN CB HB2 sing N N 119 GLN CB HB3 sing N N 120 GLN CG CD sing N N 121 GLN CG HG2 sing N N 122 GLN CG HG3 sing N N 123 GLN CD OE1 doub N N 124 GLN CD NE2 sing N N 125 GLN NE2 HE21 sing N N 126 GLN NE2 HE22 sing N N 127 GLN OXT HXT sing N N 128 GLU N CA sing N N 129 GLU N H sing N N 130 GLU N H2 sing N N 131 GLU CA C sing N N 132 GLU CA CB sing N N 133 GLU CA HA sing N N 134 GLU C O doub N N 135 GLU C OXT sing N N 136 GLU CB CG sing N N 137 GLU CB HB2 sing N N 138 GLU CB HB3 sing N N 139 GLU CG CD sing N N 140 GLU CG HG2 sing N N 141 GLU CG HG3 sing N N 142 GLU CD OE1 doub N N 143 GLU CD OE2 sing N N 144 GLU OE2 HE2 sing N N 145 GLU OXT HXT sing N N 146 GLY N CA sing N N 147 GLY N H sing N N 148 GLY N H2 sing N N 149 GLY CA C sing N N 150 GLY CA HA2 sing N N 151 GLY CA HA3 sing N N 152 GLY C O doub N N 153 GLY C OXT sing N N 154 GLY OXT HXT sing N N 155 HIS N CA sing N N 156 HIS N H sing N N 157 HIS N H2 sing N N 158 HIS CA C sing N N 159 HIS CA CB sing N N 160 HIS CA HA sing N N 161 HIS C O doub N N 162 HIS C OXT sing N N 163 HIS CB CG sing N N 164 HIS CB HB2 sing N N 165 HIS CB HB3 sing N N 166 HIS CG ND1 sing Y N 167 HIS CG CD2 doub Y N 168 HIS ND1 CE1 doub Y N 169 HIS ND1 HD1 sing N N 170 HIS CD2 NE2 sing Y N 171 HIS CD2 HD2 sing N N 172 HIS CE1 NE2 sing Y N 173 HIS CE1 HE1 sing N N 174 HIS NE2 HE2 sing N N 175 HIS OXT HXT sing N N 176 HOH O H1 sing N N 177 HOH O H2 sing N N 178 ILE N CA sing N N 179 ILE N H sing N N 180 ILE N H2 sing N N 181 ILE CA C sing N N 182 ILE CA CB sing N N 183 ILE CA HA sing N N 184 ILE C O doub N N 185 ILE C OXT sing N N 186 ILE CB CG1 sing N N 187 ILE CB CG2 sing N N 188 ILE CB HB sing N N 189 ILE CG1 CD1 sing N N 190 ILE CG1 HG12 sing N N 191 ILE CG1 HG13 sing N N 192 ILE CG2 HG21 sing N N 193 ILE CG2 HG22 sing N N 194 ILE CG2 HG23 sing N N 195 ILE CD1 HD11 sing N N 196 ILE CD1 HD12 sing N N 197 ILE CD1 HD13 sing N N 198 ILE OXT HXT sing N N 199 LEU N CA sing N N 200 LEU N H sing N N 201 LEU N H2 sing N N 202 LEU CA C sing N N 203 LEU CA CB sing N N 204 LEU CA HA sing N N 205 LEU C O doub N N 206 LEU C OXT sing N N 207 LEU CB CG sing N N 208 LEU CB HB2 sing N N 209 LEU CB HB3 sing N N 210 LEU CG CD1 sing N N 211 LEU CG CD2 sing N N 212 LEU CG HG sing N N 213 LEU CD1 HD11 sing N N 214 LEU CD1 HD12 sing N N 215 LEU CD1 HD13 sing N N 216 LEU CD2 HD21 sing N N 217 LEU CD2 HD22 sing N N 218 LEU CD2 HD23 sing N N 219 LEU OXT HXT sing N N 220 LYS N CA sing N N 221 LYS N H sing N N 222 LYS N H2 sing N N 223 LYS CA C sing N N 224 LYS CA CB sing N N 225 LYS CA HA sing N N 226 LYS C O doub N N 227 LYS C OXT sing N N 228 LYS CB CG sing N N 229 LYS CB HB2 sing N N 230 LYS CB HB3 sing N N 231 LYS CG CD sing N N 232 LYS CG HG2 sing N N 233 LYS CG HG3 sing N N 234 LYS CD CE sing N N 235 LYS CD HD2 sing N N 236 LYS CD HD3 sing N N 237 LYS CE NZ sing N N 238 LYS CE HE2 sing N N 239 LYS CE HE3 sing N N 240 LYS NZ HZ1 sing N N 241 LYS NZ HZ2 sing N N 242 LYS NZ HZ3 sing N N 243 LYS OXT HXT sing N N 244 PHE N CA sing N N 245 PHE N H sing N N 246 PHE N H2 sing N N 247 PHE CA C sing N N 248 PHE CA CB sing N N 249 PHE CA HA sing N N 250 PHE C O doub N N 251 PHE C OXT sing N N 252 PHE CB CG sing N N 253 PHE CB HB2 sing N N 254 PHE CB HB3 sing N N 255 PHE CG CD1 doub Y N 256 PHE CG CD2 sing Y N 257 PHE CD1 CE1 sing Y N 258 PHE CD1 HD1 sing N N 259 PHE CD2 CE2 doub Y N 260 PHE CD2 HD2 sing N N 261 PHE CE1 CZ doub Y N 262 PHE CE1 HE1 sing N N 263 PHE CE2 CZ sing Y N 264 PHE CE2 HE2 sing N N 265 PHE CZ HZ sing N N 266 PHE OXT HXT sing N N 267 PRO N CA sing N N 268 PRO N CD sing N N 269 PRO N H sing N N 270 PRO CA C sing N N 271 PRO CA CB sing N N 272 PRO CA HA sing N N 273 PRO C O doub N N 274 PRO C OXT sing N N 275 PRO CB CG sing N N 276 PRO CB HB2 sing N N 277 PRO CB HB3 sing N N 278 PRO CG CD sing N N 279 PRO CG HG2 sing N N 280 PRO CG HG3 sing N N 281 PRO CD HD2 sing N N 282 PRO CD HD3 sing N N 283 PRO OXT HXT sing N N 284 SER N CA sing N N 285 SER N H sing N N 286 SER N H2 sing N N 287 SER CA C sing N N 288 SER CA CB sing N N 289 SER CA HA sing N N 290 SER C O doub N N 291 SER C OXT sing N N 292 SER CB OG sing N N 293 SER CB HB2 sing N N 294 SER CB HB3 sing N N 295 SER OG HG sing N N 296 SER OXT HXT sing N N 297 THR N CA sing N N 298 THR N H sing N N 299 THR N H2 sing N N 300 THR CA C sing N N 301 THR CA CB sing N N 302 THR CA HA sing N N 303 THR C O doub N N 304 THR C OXT sing N N 305 THR CB OG1 sing N N 306 THR CB CG2 sing N N 307 THR CB HB sing N N 308 THR OG1 HG1 sing N N 309 THR CG2 HG21 sing N N 310 THR CG2 HG22 sing N N 311 THR CG2 HG23 sing N N 312 THR OXT HXT sing N N 313 TRP N CA sing N N 314 TRP N H sing N N 315 TRP N H2 sing N N 316 TRP CA C sing N N 317 TRP CA CB sing N N 318 TRP CA HA sing N N 319 TRP C O doub N N 320 TRP C OXT sing N N 321 TRP CB CG sing N N 322 TRP CB HB2 sing N N 323 TRP CB HB3 sing N N 324 TRP CG CD1 doub Y N 325 TRP CG CD2 sing Y N 326 TRP CD1 NE1 sing Y N 327 TRP CD1 HD1 sing N N 328 TRP CD2 CE2 doub Y N 329 TRP CD2 CE3 sing Y N 330 TRP NE1 CE2 sing Y N 331 TRP NE1 HE1 sing N N 332 TRP CE2 CZ2 sing Y N 333 TRP CE3 CZ3 doub Y N 334 TRP CE3 HE3 sing N N 335 TRP CZ2 CH2 doub Y N 336 TRP CZ2 HZ2 sing N N 337 TRP CZ3 CH2 sing Y N 338 TRP CZ3 HZ3 sing N N 339 TRP CH2 HH2 sing N N 340 TRP OXT HXT sing N N 341 TYR N CA sing N N 342 TYR N H sing N N 343 TYR N H2 sing N N 344 TYR CA C sing N N 345 TYR CA CB sing N N 346 TYR CA HA sing N N 347 TYR C O doub N N 348 TYR C OXT sing N N 349 TYR CB CG sing N N 350 TYR CB HB2 sing N N 351 TYR CB HB3 sing N N 352 TYR CG CD1 doub Y N 353 TYR CG CD2 sing Y N 354 TYR CD1 CE1 sing Y N 355 TYR CD1 HD1 sing N N 356 TYR CD2 CE2 doub Y N 357 TYR CD2 HD2 sing N N 358 TYR CE1 CZ doub Y N 359 TYR CE1 HE1 sing N N 360 TYR CE2 CZ sing Y N 361 TYR CE2 HE2 sing N N 362 TYR CZ OH sing N N 363 TYR OH HH sing N N 364 TYR OXT HXT sing N N 365 VAL N CA sing N N 366 VAL N H sing N N 367 VAL N H2 sing N N 368 VAL CA C sing N N 369 VAL CA CB sing N N 370 VAL CA HA sing N N 371 VAL C O doub N N 372 VAL C OXT sing N N 373 VAL CB CG1 sing N N 374 VAL CB CG2 sing N N 375 VAL CB HB sing N N 376 VAL CG1 HG11 sing N N 377 VAL CG1 HG12 sing N N 378 VAL CG1 HG13 sing N N 379 VAL CG2 HG21 sing N N 380 VAL CG2 HG22 sing N N 381 VAL CG2 HG23 sing N N 382 VAL OXT HXT sing N N 383 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGalp[1Me]a' AMG 'COMMON NAME' GMML 1.0 1-methyl-a-D-galactopyranose AMG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-methyl-galactoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'methyl alpha-D-galactopyranoside' AMG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NDT _pdbx_initial_refinement_model.details 'PDB ENTRY 4NDT' #