HEADER TRANSFERASE 28-OCT-13 4NE2 TITLE PANTOTHENAMIDE-BOUND PANTOTHENATE KINASE FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 507522; SOURCE 4 STRAIN: 342; SOURCE 5 GENE: COAA, KPK_5321, UUU_44690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS PROTEIN-SUBSTRATE COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HUGHES,T.ANTOSHCHENKO,K.P.KIM,D.SMIL,H.W.PARK REVDAT 3 20-SEP-23 4NE2 1 REMARK LINK REVDAT 2 25-JUN-14 4NE2 1 JRNL REVDAT 1 26-FEB-14 4NE2 0 JRNL AUTH S.J.HUGHES,T.ANTOSHCHENKO,K.P.KIM,D.SMIL,H.W.PARK JRNL TITL STRUCTURAL CHARACTERIZATION OF A NEW N-SUBSTITUTED JRNL TITL 2 PANTOTHENAMIDE BOUND TO PANTOTHENATE KINASES FROM KLEBSIELLA JRNL TITL 3 PNEUMONIAE AND STAPHYLOCOCCUS AUREUS. JRNL REF PROTEINS V. 82 1542 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24470271 JRNL DOI 10.1002/PROT.24524 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.71000 REMARK 3 B22 (A**2) : 1.58000 REMARK 3 B33 (A**2) : 1.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5313 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7244 ; 1.286 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 639 ; 5.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;34.893 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;13.615 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 797 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4049 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2514 ; 4.314 ; 3.015 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3167 ; 5.365 ; 4.523 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2795 ; 6.651 ; 3.531 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5309 ; 2.754 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 146 ;41.714 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5434 ;31.767 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 23 1 REMARK 3 1 B 8 B 23 1 REMARK 3 2 A 38 A 80 1 REMARK 3 2 B 38 B 80 1 REMARK 3 3 A 87 A 316 1 REMARK 3 3 B 87 B 316 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 2258 ; 4.380 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4NE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03318 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 4GI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL PROTEIN + 0.5 UL BUFFER (2M REMARK 280 SODIUM FORMATE, 0.1M TRIS HCL), PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.18300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.74400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.18300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.74400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.18300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.74400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.18300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.74400 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 90.74400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 90.74400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.74400 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.74400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.18300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 90.18300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 90.18300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 53.38250 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 90.18300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.38250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -90.18300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.38250 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.74400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 534 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 674 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 MET A 29 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 25 REMARK 465 SER B 26 REMARK 465 VAL B 27 REMARK 465 PRO B 28 REMARK 465 MET B 29 REMARK 465 THR B 30 REMARK 465 LEU B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 213 71.83 -159.71 REMARK 500 SER A 304 -163.07 -124.97 REMARK 500 PRO B 11 2.05 -69.43 REMARK 500 ASN B 43 117.73 -163.68 REMARK 500 ASN B 83 73.13 -101.20 REMARK 500 ASP B 213 73.74 -158.74 REMARK 500 SER B 304 -163.46 -124.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 102 OG REMARK 620 2 ADP A 401 O2B 74.2 REMARK 620 3 HOH A 581 O 80.0 82.9 REMARK 620 4 HOH A 582 O 86.1 80.6 160.7 REMARK 620 5 HOH A 583 O 76.2 147.8 104.2 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 102 OG REMARK 620 2 ADP B 401 O2B 86.4 REMARK 620 3 HOH B 587 O 100.2 85.1 REMARK 620 4 HOH B 588 O 86.2 88.0 170.3 REMARK 620 5 HOH B 589 O 81.5 163.0 85.2 103.1 REMARK 620 6 HOH B 590 O 175.2 92.8 84.4 89.1 100.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SH2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SH2 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NB4 RELATED DB: PDB DBREF 4NE2 A 1 316 UNP B5XYG3 COAA_KLEP3 1 316 DBREF 4NE2 B 1 316 UNP B5XYG3 COAA_KLEP3 1 316 SEQRES 1 A 334 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 334 LEU TYR PHE GLN GLY MET SER GLN LYS GLU GLN THR LEU SEQRES 3 A 334 MET THR PRO TYR LEU GLN PHE ASN ARG HIS GLN TRP ALA SEQRES 4 A 334 ALA LEU ARG ASP SER VAL PRO MET THR LEU THR GLU ASP SEQRES 5 A 334 GLU ILE THR ARG LEU LYS GLY ILE ASN GLU ASP LEU SER SEQRES 6 A 334 LEU GLU GLU VAL ALA GLU ILE TYR LEU PRO LEU SER ARG SEQRES 7 A 334 LEU LEU ASN PHE TYR ILE SER SER ASN LEU ARG ARG GLN SEQRES 8 A 334 ALA VAL LEU GLU GLN PHE LEU GLY THR ASN GLY GLN ARG SEQRES 9 A 334 ILE PRO TYR ILE ILE SER ILE ALA GLY SER VAL ALA VAL SEQRES 10 A 334 GLY LYS SER THR THR ALA ARG VAL LEU GLN ALA LEU LEU SEQRES 11 A 334 SER ARG TRP PRO GLU HIS ARG HIS VAL GLU LEU ILE THR SEQRES 12 A 334 THR ASP GLY PHE LEU HIS PRO ASN SER VAL LEU LYS GLU SEQRES 13 A 334 ARG GLY LEU MET LYS LYS LYS GLY PHE PRO GLN SER TYR SEQRES 14 A 334 ASP MET HIS ARG LEU VAL LYS PHE VAL SER ASP LEU LYS SEQRES 15 A 334 SER GLY VAL PRO GLN ALA THR ALA PRO VAL TYR SER HIS SEQRES 16 A 334 LEU ILE TYR ASP VAL ILE PRO ASP GLY ASP LYS THR VAL SEQRES 17 A 334 ALA GLN PRO ASP ILE LEU ILE LEU GLU GLY LEU ASN VAL SEQRES 18 A 334 LEU GLN SER GLY MET ASP TYR PRO HIS ASP PRO HIS HIS SEQRES 19 A 334 VAL PHE VAL SER ASP PHE VAL ASP PHE SER ILE TYR VAL SEQRES 20 A 334 ASP ALA PRO GLU GLU LEU LEU LYS SER TRP TYR ILE ASN SEQRES 21 A 334 ARG PHE LEU LYS PHE ARG GLU GLY ALA PHE THR ASP PRO SEQRES 22 A 334 ASP SER TYR PHE HIS ASN TYR ALA LYS LEU SER LYS GLU SEQRES 23 A 334 GLU ALA VAL ASP ILE ALA THR SER LEU TRP ASN GLU ILE SEQRES 24 A 334 ASN LEU MET ASN LEU LYS GLU ASN ILE LEU PRO THR ARG SEQRES 25 A 334 GLU ARG ALA SER LEU ILE MET THR LYS SER ALA ASN HIS SEQRES 26 A 334 SER VAL ASN GLN VAL ARG LEU ARG LYS SEQRES 1 B 334 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 334 LEU TYR PHE GLN GLY MET SER GLN LYS GLU GLN THR LEU SEQRES 3 B 334 MET THR PRO TYR LEU GLN PHE ASN ARG HIS GLN TRP ALA SEQRES 4 B 334 ALA LEU ARG ASP SER VAL PRO MET THR LEU THR GLU ASP SEQRES 5 B 334 GLU ILE THR ARG LEU LYS GLY ILE ASN GLU ASP LEU SER SEQRES 6 B 334 LEU GLU GLU VAL ALA GLU ILE TYR LEU PRO LEU SER ARG SEQRES 7 B 334 LEU LEU ASN PHE TYR ILE SER SER ASN LEU ARG ARG GLN SEQRES 8 B 334 ALA VAL LEU GLU GLN PHE LEU GLY THR ASN GLY GLN ARG SEQRES 9 B 334 ILE PRO TYR ILE ILE SER ILE ALA GLY SER VAL ALA VAL SEQRES 10 B 334 GLY LYS SER THR THR ALA ARG VAL LEU GLN ALA LEU LEU SEQRES 11 B 334 SER ARG TRP PRO GLU HIS ARG HIS VAL GLU LEU ILE THR SEQRES 12 B 334 THR ASP GLY PHE LEU HIS PRO ASN SER VAL LEU LYS GLU SEQRES 13 B 334 ARG GLY LEU MET LYS LYS LYS GLY PHE PRO GLN SER TYR SEQRES 14 B 334 ASP MET HIS ARG LEU VAL LYS PHE VAL SER ASP LEU LYS SEQRES 15 B 334 SER GLY VAL PRO GLN ALA THR ALA PRO VAL TYR SER HIS SEQRES 16 B 334 LEU ILE TYR ASP VAL ILE PRO ASP GLY ASP LYS THR VAL SEQRES 17 B 334 ALA GLN PRO ASP ILE LEU ILE LEU GLU GLY LEU ASN VAL SEQRES 18 B 334 LEU GLN SER GLY MET ASP TYR PRO HIS ASP PRO HIS HIS SEQRES 19 B 334 VAL PHE VAL SER ASP PHE VAL ASP PHE SER ILE TYR VAL SEQRES 20 B 334 ASP ALA PRO GLU GLU LEU LEU LYS SER TRP TYR ILE ASN SEQRES 21 B 334 ARG PHE LEU LYS PHE ARG GLU GLY ALA PHE THR ASP PRO SEQRES 22 B 334 ASP SER TYR PHE HIS ASN TYR ALA LYS LEU SER LYS GLU SEQRES 23 B 334 GLU ALA VAL ASP ILE ALA THR SER LEU TRP ASN GLU ILE SEQRES 24 B 334 ASN LEU MET ASN LEU LYS GLU ASN ILE LEU PRO THR ARG SEQRES 25 B 334 GLU ARG ALA SER LEU ILE MET THR LYS SER ALA ASN HIS SEQRES 26 B 334 SER VAL ASN GLN VAL ARG LEU ARG LYS HET ADP A 401 27 HET SH2 A 402 26 HET MG A 403 1 HET ADP B 401 27 HET SH2 B 402 26 HET MG B 403 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SH2 (R)-N-(3-((2-(BENZO[D][1,3]DIOXOL-5-YL)ETHYL)AMINO)-3- HETNAM 2 SH2 OXOPROPYL)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 SH2 2(C18 H26 N2 O6) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *404(H2 O) HELIX 1 1 ARG A 17 ALA A 22 1 6 HELIX 2 2 THR A 32 ASN A 43 1 12 HELIX 3 3 SER A 47 ILE A 54 1 8 HELIX 4 4 ILE A 54 GLY A 81 1 28 HELIX 5 5 GLY A 100 SER A 113 1 14 HELIX 6 6 ARG A 114 ARG A 119 5 6 HELIX 7 7 ASP A 127 LEU A 130 5 4 HELIX 8 8 PRO A 132 GLY A 140 1 9 HELIX 9 9 PHE A 147 TYR A 151 5 5 HELIX 10 10 ASP A 152 LYS A 164 1 13 HELIX 11 11 SER A 206 TYR A 210 5 5 HELIX 12 12 PHE A 218 VAL A 223 5 6 HELIX 13 13 PRO A 232 ALA A 251 1 20 HELIX 14 14 PHE A 259 LYS A 264 1 6 HELIX 15 15 SER A 266 ILE A 281 1 16 HELIX 16 16 ILE A 281 ILE A 290 1 10 HELIX 17 17 LEU A 291 ALA A 297 5 7 HELIX 18 18 ALA A 305 HIS A 307 5 3 HELIX 19 19 ARG B 17 ALA B 22 1 6 HELIX 20 20 GLU B 33 ASN B 43 1 11 HELIX 21 21 SER B 47 ILE B 54 1 8 HELIX 22 22 ILE B 54 GLY B 81 1 28 HELIX 23 23 GLY B 100 SER B 113 1 14 HELIX 24 24 ARG B 114 ARG B 119 5 6 HELIX 25 25 ASP B 127 LEU B 130 5 4 HELIX 26 26 PRO B 132 GLY B 140 1 9 HELIX 27 27 PHE B 147 TYR B 151 5 5 HELIX 28 28 ASP B 152 LYS B 164 1 13 HELIX 29 29 SER B 206 TYR B 210 5 5 HELIX 30 30 PHE B 218 VAL B 223 5 6 HELIX 31 31 PRO B 232 ALA B 251 1 20 HELIX 32 32 PHE B 259 LYS B 264 1 6 HELIX 33 33 SER B 266 ILE B 281 1 16 HELIX 34 34 ILE B 281 ILE B 290 1 10 HELIX 35 35 LEU B 291 ALA B 297 5 7 HELIX 36 36 ALA B 305 HIS B 307 5 3 SHEET 1 A 7 TYR A 12 ASN A 16 0 SHEET 2 A 7 VAL A 309 ARG A 315 -1 O LEU A 314 N LEU A 13 SHEET 3 A 7 LEU A 299 LYS A 303 -1 N THR A 302 O ASN A 310 SHEET 4 A 7 PHE A 225 ASP A 230 1 N ASP A 230 O MET A 301 SHEET 5 A 7 TYR A 89 GLY A 95 1 N ALA A 94 O ILE A 227 SHEET 6 A 7 ILE A 195 GLU A 199 1 O LEU A 198 N ILE A 91 SHEET 7 A 7 VAL A 121 THR A 125 1 N GLU A 122 O ILE A 195 SHEET 1 B 2 ALA A 170 ALA A 172 0 SHEET 2 B 2 LYS A 188 VAL A 190 -1 O VAL A 190 N ALA A 170 SHEET 1 C 2 TYR A 175 SER A 176 0 SHEET 2 C 2 ASP A 181 VAL A 182 -1 O ASP A 181 N SER A 176 SHEET 1 D 7 TYR B 12 ASN B 16 0 SHEET 2 D 7 VAL B 309 ARG B 315 -1 O LEU B 314 N LEU B 13 SHEET 3 D 7 LEU B 299 LYS B 303 -1 N THR B 302 O ASN B 310 SHEET 4 D 7 PHE B 225 ASP B 230 1 N ASP B 230 O MET B 301 SHEET 5 D 7 TYR B 89 GLY B 95 1 N ALA B 94 O ILE B 227 SHEET 6 D 7 ILE B 195 GLU B 199 1 O LEU B 198 N ILE B 91 SHEET 7 D 7 VAL B 121 THR B 125 1 N GLU B 122 O ILE B 197 SHEET 1 E 2 ALA B 170 ALA B 172 0 SHEET 2 E 2 LYS B 188 VAL B 190 -1 O VAL B 190 N ALA B 170 SHEET 1 F 2 TYR B 175 SER B 176 0 SHEET 2 F 2 ASP B 181 VAL B 182 -1 O ASP B 181 N SER B 176 LINK OG ASER A 102 MG MG A 403 1555 1555 2.74 LINK O2B ADP A 401 MG MG A 403 1555 1555 2.43 LINK MG MG A 403 O HOH A 581 1555 1555 2.13 LINK MG MG A 403 O HOH A 582 1555 1555 2.15 LINK MG MG A 403 O HOH A 583 1555 1555 2.09 LINK OG SER B 102 MG MG B 403 1555 1555 2.51 LINK O2B ADP B 401 MG MG B 403 1555 1555 2.25 LINK MG MG B 403 O HOH B 587 1555 1555 2.15 LINK MG MG B 403 O HOH B 588 1555 1555 1.98 LINK MG MG B 403 O HOH B 589 1555 1555 2.18 LINK MG MG B 403 O HOH B 590 1555 1555 2.42 SITE 1 AC1 20 ASN A 43 ASP A 45 SER A 96 ALA A 98 SITE 2 AC1 20 VAL A 99 GLY A 100 LYS A 101 SER A 102 SITE 3 AC1 20 THR A 103 ARG A 243 LYS A 303 HIS A 307 SITE 4 AC1 20 MG A 403 HOH A 546 HOH A 569 HOH A 574 SITE 5 AC1 20 HOH A 581 HOH A 582 HOH A 585 HOH A 612 SITE 1 AC2 12 ASP A 127 GLY A 146 TYR A 175 HIS A 177 SITE 2 AC2 12 TYR A 180 LEU A 201 TYR A 240 ARG A 243 SITE 3 AC2 12 PHE A 244 PHE A 247 PHE A 259 ASN A 282 SITE 1 AC3 5 SER A 102 ADP A 401 HOH A 581 HOH A 582 SITE 2 AC3 5 HOH A 583 SITE 1 AC4 22 ASN B 43 ASP B 45 SER B 96 ALA B 98 SITE 2 AC4 22 VAL B 99 GLY B 100 LYS B 101 SER B 102 SITE 3 AC4 22 THR B 103 ARG B 243 LYS B 303 HIS B 307 SITE 4 AC4 22 MG B 403 HOH B 518 HOH B 566 HOH B 574 SITE 5 AC4 22 HOH B 575 HOH B 580 HOH B 587 HOH B 588 SITE 6 AC4 22 HOH B 590 HOH B 671 SITE 1 AC5 14 ASP B 127 LEU B 130 GLY B 146 TYR B 151 SITE 2 AC5 14 TYR B 180 TYR B 240 ARG B 243 PHE B 244 SITE 3 AC5 14 PHE B 247 PHE B 259 ASN B 282 HOH B 550 SITE 4 AC5 14 HOH B 569 HOH B 677 SITE 1 AC6 6 SER B 102 ADP B 401 HOH B 587 HOH B 588 SITE 2 AC6 6 HOH B 589 HOH B 590 CRYST1 106.765 180.366 181.488 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005510 0.00000