HEADER RNA 31-OCT-13 4NFO TITLE CRYSTAL STRUCTURE ANALYSIS OF THE 16MER GCAGACUUAAGUCUGC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCAGACUUAAGUCUGC; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA 16MER OLIGO, RNA EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BEAL,A.J.FISHER,K.J.PHELPS,J.M.IBARRA-SOZA,Y.ZHENG REVDAT 3 28-FEB-24 4NFO 1 REMARK REVDAT 2 03-SEP-14 4NFO 1 JRNL REVDAT 1 02-JUL-14 4NFO 0 JRNL AUTH K.J.PHELPS,J.M.IBARRA-SOZA,K.TRAN,A.J.FISHER,P.A.BEAL JRNL TITL CLICK MODIFICATION OF RNA AT ADENOSINE: STRUCTURE AND JRNL TITL 2 REACTIVITY OF 7-ETHYNYL- AND JRNL TITL 3 7-TRIAZOLYL-8-AZA-7-DEAZAADENOSINE IN RNA. JRNL REF ACS CHEM.BIOL. V. 9 1780 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24896732 JRNL DOI 10.1021/CB500270X REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 8672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1011 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.06000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1141 ; 0.011 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 497 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1764 ; 1.584 ; 1.291 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1203 ; 1.714 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 568 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 16 B 1 16 919 0.01 0.05 REMARK 3 2 A 1 16 C 1 16 919 0.01 0.05 REMARK 3 3 B 1 16 C 1 16 923 0.01 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): 58.6865 21.5710 34.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1938 REMARK 3 T33: 0.0935 T12: 0.0208 REMARK 3 T13: -0.0126 T23: 0.0864 REMARK 3 L TENSOR REMARK 3 L11: 5.4243 L22: 13.6947 REMARK 3 L33: 8.5952 L12: 2.8779 REMARK 3 L13: -1.3108 L23: -1.1238 REMARK 3 S TENSOR REMARK 3 S11: 0.3661 S12: 0.6166 S13: 0.2664 REMARK 3 S21: -0.1220 S22: 0.1065 S23: 0.5342 REMARK 3 S31: 0.3670 S32: -0.1017 S33: -0.4726 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 69.0100 20.4944 24.1121 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.1438 REMARK 3 T33: 0.1060 T12: 0.0255 REMARK 3 T13: 0.0065 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 5.8119 L22: 6.2044 REMARK 3 L33: 3.2463 L12: -1.6194 REMARK 3 L13: -2.0387 L23: 4.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.6580 S12: 0.7217 S13: 0.2870 REMARK 3 S21: -0.3007 S22: -0.4622 S23: -0.0774 REMARK 3 S31: -0.3226 S32: -0.3688 S33: -0.1958 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 59.2287 12.7382 14.1039 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1466 REMARK 3 T33: 0.1487 T12: 0.0512 REMARK 3 T13: -0.1288 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 4.2617 L22: 1.1055 REMARK 3 L33: 4.7873 L12: 1.3669 REMARK 3 L13: 3.5732 L23: 0.0537 REMARK 3 S TENSOR REMARK 3 S11: 0.2894 S12: 0.5431 S13: -0.5184 REMARK 3 S21: 0.1700 S22: 0.1552 S23: -0.1562 REMARK 3 S31: 0.1087 S32: 0.4677 S33: -0.4446 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5523 22.9726 2.8659 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1853 REMARK 3 T33: 0.1279 T12: -0.0047 REMARK 3 T13: 0.1055 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 9.0010 L22: 5.6258 REMARK 3 L33: 0.2098 L12: -4.0006 REMARK 3 L13: -0.4780 L23: 1.0523 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.2041 S13: 0.0351 REMARK 3 S21: -0.8122 S22: 0.1469 S23: -0.6664 REMARK 3 S31: -0.1692 S32: 0.0461 S33: -0.1646 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 4 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9416 37.3465 6.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.2529 REMARK 3 T33: 0.1322 T12: 0.0473 REMARK 3 T13: 0.0708 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 5.6874 L22: 8.6227 REMARK 3 L33: 10.5975 L12: 2.7092 REMARK 3 L13: -0.3886 L23: -4.5551 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: -0.2864 S13: 0.3892 REMARK 3 S21: 0.4563 S22: 0.7714 S23: 0.7618 REMARK 3 S31: -0.2014 S32: 0.2724 S33: -0.6355 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9669 28.9711 17.6931 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.1864 REMARK 3 T33: 0.1036 T12: -0.0481 REMARK 3 T13: 0.0275 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 3.2022 L22: 5.1833 REMARK 3 L33: 6.1270 L12: -2.0505 REMARK 3 L13: 4.2921 L23: -1.5582 REMARK 3 S TENSOR REMARK 3 S11: -0.1510 S12: -0.4979 S13: -0.1484 REMARK 3 S21: 0.0437 S22: 0.4130 S23: 0.1817 REMARK 3 S31: -0.1292 S32: -0.6040 S33: -0.2620 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 50.7333 41.2979 27.7183 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.1864 REMARK 3 T33: 0.1187 T12: -0.0056 REMARK 3 T13: -0.0108 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 1.9354 L22: 10.0583 REMARK 3 L33: 3.3509 L12: -2.4339 REMARK 3 L13: -2.5179 L23: 3.8909 REMARK 3 S TENSOR REMARK 3 S11: -0.2373 S12: -0.2556 S13: 0.2245 REMARK 3 S21: 0.1399 S22: 0.5691 S23: -0.5867 REMARK 3 S31: 0.2823 S32: 0.3552 S33: -0.3318 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5126 36.7694 38.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.2431 REMARK 3 T33: 0.1528 T12: -0.0545 REMARK 3 T13: -0.1419 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 5.9655 L22: 4.4590 REMARK 3 L33: 1.0101 L12: -3.4008 REMARK 3 L13: -1.3010 L23: 2.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.2269 S12: -0.7063 S13: -0.4523 REMARK 3 S21: 0.3633 S22: -0.0176 S23: -0.2589 REMARK 3 S31: 0.2164 S32: -0.0546 S33: -0.2093 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5490 30.9096 34.9746 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1277 REMARK 3 T33: 0.0995 T12: -0.0067 REMARK 3 T13: -0.0696 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 13.7105 L22: 2.4588 REMARK 3 L33: 11.4311 L12: -0.5854 REMARK 3 L13: 5.7247 L23: -0.3850 REMARK 3 S TENSOR REMARK 3 S11: 0.5088 S12: 0.1884 S13: -0.5963 REMARK 3 S21: -0.4297 S22: -0.0569 S23: 0.0062 REMARK 3 S31: 0.0004 S32: 0.3605 S33: -0.4519 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3512 40.3155 24.1143 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.2106 REMARK 3 T33: 0.0900 T12: -0.0642 REMARK 3 T13: -0.0470 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 4.7247 L22: 5.6347 REMARK 3 L33: 5.3618 L12: -0.8921 REMARK 3 L13: -2.2926 L23: -4.3848 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.1392 S13: -0.0494 REMARK 3 S21: -1.0221 S22: 0.3529 S23: 0.2427 REMARK 3 S31: 0.9184 S32: -0.2655 S33: -0.2625 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 53.9785 35.7666 14.1123 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1811 REMARK 3 T33: 0.1348 T12: -0.0750 REMARK 3 T13: 0.0925 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 4.3163 L22: 6.9547 REMARK 3 L33: 6.4784 L12: -4.7728 REMARK 3 L13: -4.2331 L23: 6.6510 REMARK 3 S TENSOR REMARK 3 S11: 0.5277 S12: -0.1580 S13: 0.4594 REMARK 3 S21: -0.6878 S22: 0.0483 S23: -0.6249 REMARK 3 S31: -0.6097 S32: -0.0302 S33: -0.5760 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 16 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5475 30.0459 2.8223 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.2090 REMARK 3 T33: 0.1472 T12: -0.0015 REMARK 3 T13: -0.0045 T23: 0.1514 REMARK 3 L TENSOR REMARK 3 L11: 1.8008 L22: 9.8060 REMARK 3 L33: 2.6803 L12: -0.1782 REMARK 3 L13: -0.4836 L23: 1.1170 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.5732 S13: 0.4773 REMARK 3 S21: -0.4505 S22: 0.1621 S23: 0.3071 REMARK 3 S31: -0.0877 S32: 0.0158 S33: -0.1560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.148 REMARK 200 MONOCHROMATOR : SI(111) SIDE SCATTERING I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.9650 DEG REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 35.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.87 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD(V/V)(DROP), 35% REMARK 280 MPD(V/V)(RESERVOIR), 40MM NA-CACODYLATE TRIHYDRATE (PH 7), 12MM REMARK 280 SPERMINE TETRAHYDROCHLORIDE, 80MM SRCL2, 20MM MGCL2 HEXAHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.49000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.49000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS 1.5 RNA DUPLEXES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.86133 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.80424 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N2 G A 4 N14 SPM C 101 2756 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 5 O3' C B 6 P 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NFP RELATED DB: PDB REMARK 900 RELATED ID: 4NFQ RELATED DB: PDB DBREF 4NFO A 1 16 PDB 4NFO 4NFO 1 16 DBREF 4NFO B 1 16 PDB 4NFO 4NFO 1 16 DBREF 4NFO C 1 16 PDB 4NFO 4NFO 1 16 SEQRES 1 A 16 G C A G A C U U A A G U C SEQRES 2 A 16 U G C SEQRES 1 B 16 G C A G A C U U A A G U C SEQRES 2 B 16 U G C SEQRES 1 C 16 G C A G A C U U A A G U C SEQRES 2 C 16 U G C HET SPM C 101 14 HETNAM SPM SPERMINE FORMUL 4 SPM C10 H26 N4 FORMUL 5 HOH *22(H2 O) SITE 1 AC1 9 G A 4 C A 13 U A 14 G B 4 SITE 2 AC1 9 U B 12 C B 13 A C 5 U C 12 SITE 3 AC1 9 C C 13 CRYST1 74.980 43.080 48.760 90.00 120.98 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013337 0.000000 0.008008 0.00000 SCALE2 0.000000 0.023213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023922 0.00000