HEADER RNA 31-OCT-13 4NFP TITLE CRYSTAL STRUCTURE ANALYSIS OF THE 16MER GCAGNCUUAAGUCUGC CONTAINING 8- TITLE 2 AZA-7-DEAZA-7-ETHYNYL ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCAG(A7E)CUUAAGUCUGC; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA 16MER OLIGO, 8-AZA-7-DEAZA-7-ETHYNYLADENOSINE, POSITION 5, RNA EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BEAL,A.J.FISHER,K.J.PHELPS,J.M.IBARRA-SOZA,Y.ZHENG REVDAT 3 28-FEB-24 4NFP 1 REMARK LINK REVDAT 2 03-SEP-14 4NFP 1 JRNL REVDAT 1 02-JUL-14 4NFP 0 JRNL AUTH K.J.PHELPS,J.M.IBARRA-SOZA,K.TRAN,A.J.FISHER,P.A.BEAL JRNL TITL CLICK MODIFICATION OF RNA AT ADENOSINE: STRUCTURE AND JRNL TITL 2 REACTIVITY OF 7-ETHYNYL- AND JRNL TITL 3 7-TRIAZOLYL-8-AZA-7-DEAZAADENOSINE IN RNA. JRNL REF ACS CHEM.BIOL. V. 9 1780 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24896732 JRNL DOI 10.1021/CB500270X REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 10100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 619 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3960 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1017 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : 4.53000 REMARK 3 B33 (A**2) : -3.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1140 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 480 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1764 ; 1.894 ; 1.394 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1155 ; 1.549 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 579 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 264 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 16 B 1 16 931 0.01 0.05 REMARK 3 2 A 1 16 C 1 16 927 0.03 0.05 REMARK 3 3 B 1 16 C 1 16 928 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5477 21.4133 35.0206 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.1314 REMARK 3 T33: 0.1980 T12: 0.0068 REMARK 3 T13: 0.0033 T23: 0.0860 REMARK 3 L TENSOR REMARK 3 L11: 5.0298 L22: 10.4131 REMARK 3 L33: 0.8602 L12: 3.8770 REMARK 3 L13: 1.1336 L23: 2.9811 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: 0.3500 S13: 0.0894 REMARK 3 S21: -0.0620 S22: -0.1933 S23: 0.3775 REMARK 3 S31: -0.0141 S32: -0.0614 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 68.7562 20.6054 24.2297 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.0661 REMARK 3 T33: 0.1302 T12: 0.0011 REMARK 3 T13: -0.0241 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 5.7995 L22: 2.1056 REMARK 3 L33: 0.5026 L12: -1.9187 REMARK 3 L13: -1.0138 L23: 1.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.4612 S12: 0.3605 S13: 0.2153 REMARK 3 S21: -0.0263 S22: -0.3767 S23: -0.1011 REMARK 3 S31: -0.0164 S32: -0.1794 S33: -0.0845 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 59.1842 12.7866 14.1069 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0225 REMARK 3 T33: 0.1431 T12: -0.0124 REMARK 3 T13: -0.0458 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 8.6927 L22: 2.7712 REMARK 3 L33: 3.3011 L12: -0.8060 REMARK 3 L13: 4.0686 L23: 1.5540 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: 0.3730 S13: -0.4179 REMARK 3 S21: -0.0339 S22: 0.0250 S23: 0.0372 REMARK 3 S31: 0.0242 S32: 0.2252 S33: -0.1635 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 58.3963 22.9786 2.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.0459 REMARK 3 T33: 0.1411 T12: 0.0407 REMARK 3 T13: 0.0371 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 6.2267 L22: 2.0360 REMARK 3 L33: 2.2406 L12: -1.1011 REMARK 3 L13: 1.2925 L23: 1.6717 REMARK 3 S TENSOR REMARK 3 S11: 0.1838 S12: 0.2407 S13: 0.0594 REMARK 3 S21: -0.2354 S22: 0.0488 S23: -0.2358 REMARK 3 S31: -0.1362 S32: 0.1752 S33: -0.2326 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 4 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0058 37.5158 6.8609 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.1146 REMARK 3 T33: 0.1426 T12: 0.0264 REMARK 3 T13: 0.0383 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 4.2939 L22: 10.3064 REMARK 3 L33: 2.6158 L12: 3.6749 REMARK 3 L13: -0.2438 L23: 0.5206 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.2458 S13: 0.3283 REMARK 3 S21: 0.1313 S22: 0.1971 S23: 0.2883 REMARK 3 S31: -0.0848 S32: 0.1838 S33: -0.1676 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7801 29.1179 17.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0773 REMARK 3 T33: 0.0942 T12: 0.0010 REMARK 3 T13: 0.0667 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 8.7839 L22: 5.2316 REMARK 3 L33: 1.6474 L12: -0.9707 REMARK 3 L13: 3.8002 L23: -0.5219 REMARK 3 S TENSOR REMARK 3 S11: -0.2795 S12: -0.4430 S13: -0.2008 REMARK 3 S21: 0.0696 S22: 0.3863 S23: 0.0756 REMARK 3 S31: -0.1247 S32: -0.1984 S33: -0.1068 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6349 41.3462 27.7569 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1175 REMARK 3 T33: 0.1569 T12: -0.0031 REMARK 3 T13: -0.0104 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.9498 L22: 3.9342 REMARK 3 L33: 1.4729 L12: -0.5642 REMARK 3 L13: -0.4606 L23: 2.4002 REMARK 3 S TENSOR REMARK 3 S11: -0.3002 S12: -0.1432 S13: 0.2457 REMARK 3 S21: 0.2789 S22: 0.4501 S23: -0.2461 REMARK 3 S31: 0.1916 S32: 0.2746 S33: -0.1499 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4510 37.0158 38.9765 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1853 REMARK 3 T33: 0.1471 T12: -0.0280 REMARK 3 T13: -0.1247 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 4.9316 L22: 1.7994 REMARK 3 L33: 0.2176 L12: -2.5406 REMARK 3 L13: 0.3617 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.4487 S13: -0.2690 REMARK 3 S21: 0.2450 S22: 0.1145 S23: -0.0694 REMARK 3 S31: 0.1911 S32: -0.0696 S33: -0.1782 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 46.6640 31.1269 35.0116 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1979 REMARK 3 T33: 0.2441 T12: -0.0620 REMARK 3 T13: 0.0032 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 9.6106 L22: 3.0689 REMARK 3 L33: 0.5379 L12: -0.6509 REMARK 3 L13: -1.9619 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.0058 S13: -0.5000 REMARK 3 S21: -0.3002 S22: -0.0121 S23: -0.1471 REMARK 3 S31: -0.0423 S32: 0.1227 S33: -0.0403 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3304 40.3241 24.2299 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0755 REMARK 3 T33: 0.1043 T12: -0.0350 REMARK 3 T13: -0.0187 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.5976 L22: 5.7526 REMARK 3 L33: 4.7530 L12: -0.2900 REMARK 3 L13: -2.7501 L23: -4.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: -0.1561 S13: 0.0188 REMARK 3 S21: -0.3736 S22: 0.0762 S23: 0.2440 REMARK 3 S31: 0.1789 S32: 0.0401 S33: -0.2183 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8516 35.8827 14.1303 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0990 REMARK 3 T33: 0.1345 T12: -0.0130 REMARK 3 T13: 0.0540 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.8353 L22: 7.4131 REMARK 3 L33: 1.2443 L12: -2.9511 REMARK 3 L13: -1.7099 L23: 2.8581 REMARK 3 S TENSOR REMARK 3 S11: 0.2462 S12: 0.0051 S13: 0.2119 REMARK 3 S21: -0.4065 S22: -0.0593 S23: -0.3742 REMARK 3 S31: -0.1802 S32: -0.0471 S33: -0.1870 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 16 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5070 30.0911 2.9008 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0902 REMARK 3 T33: 0.1139 T12: -0.0265 REMARK 3 T13: 0.0337 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.9337 L22: 7.6449 REMARK 3 L33: 0.6569 L12: -1.5458 REMARK 3 L13: -0.7810 L23: -0.8501 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.3205 S13: 0.1700 REMARK 3 S21: -0.1328 S22: 0.1972 S23: 0.2170 REMARK 3 S31: 0.0291 S32: -0.2338 S33: -0.1706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127 REMARK 200 MONOCHROMATOR : SI(111) SIDE SCATTERING I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.9650 DEG REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.85 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD(V/V) (DROP), 35% MPD(V/V) REMARK 280 (RESERVOIR), 40MM NA-CACODYLATE TRIHYDRATE (PH 7), 12MM SPERMINE REMARK 280 TETRAHYDROCHLORIDE, 80MM SRCL2, 20MM MGCL2 HEXAHYDRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS 1.5 RNA DUPLEXES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.60280 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.89993 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NFO RELATED DB: PDB REMARK 900 RELATED ID: 4NFQ RELATED DB: PDB DBREF 4NFP A 1 16 PDB 4NFP 4NFP 1 16 DBREF 4NFP B 1 16 PDB 4NFP 4NFP 1 16 DBREF 4NFP C 1 16 PDB 4NFP 4NFP 1 16 SEQRES 1 A 16 G C A G A7E C U U A A G U C SEQRES 2 A 16 U G C SEQRES 1 B 16 G C A G A7E C U U A A G U C SEQRES 2 B 16 U G C SEQRES 1 C 16 G C A G A7E C U U A A G U C SEQRES 2 C 16 U G C MODRES 4NFP A7E A 5 A MODRES 4NFP A7E B 5 A MODRES 4NFP A7E C 5 A HET A7E A 5 24 HET A7E B 5 24 HET A7E C 5 24 HET ARF A 101 3 HET ARF B 101 3 HET ARF C 101 3 HETNAM A7E 3-ETHYNYL-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H- HETNAM 2 A7E PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM ARF FORMAMIDE HETSYN A7E 8-AZA-7-DEAZA-7-ETHYNYL ADENOSINE FORMUL 1 A7E 3(C12 H14 N5 O7 P) FORMUL 4 ARF 3(C H3 N O) FORMUL 7 HOH *29(H2 O) LINK O3' G A 4 P A7E A 5 1555 1555 1.61 LINK O3' A7E A 5 P C A 6 1555 1555 1.63 LINK O3' G B 4 P A7E B 5 1555 1555 1.61 LINK O3' A7E B 5 P C B 6 1555 1555 1.63 LINK O3' G C 4 P A7E C 5 1555 1555 1.59 LINK O3' A7E C 5 P C C 6 1555 1555 1.62 SITE 1 AC1 1 U A 12 SITE 1 AC2 1 U B 12 SITE 1 AC3 1 U C 12 CRYST1 74.800 43.190 48.790 90.00 120.82 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013369 0.000000 0.007977 0.00000 SCALE2 0.000000 0.023154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023867 0.00000