data_4NGU # _entry.id 4NGU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NGU RCSB RCSB083185 WWPDB D_1000083185 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id EFI-510103 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4NGU _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-11-02 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vetting, M.W.' 1 'Al Obaidi, N.F.' 2 'Morisco, L.L.' 3 'Wasserman, S.R.' 4 'Sojitra, S.' 5 'Stead, M.' 6 'Attonito, J.D.' 7 'Scott Glenn, A.' 8 'Chowdhury, S.' 9 'Evans, B.' 10 'Hillerich, B.' 11 'Love, J.' 12 'Seidel, R.D.' 13 'Imker, H.J.' 14 'Gerlt, J.A.' 15 'Almo, S.C.' 16 'Enzyme Function Initiative (EFI)' 17 # _citation.id primary _citation.title ;Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 54 _citation.page_first 909 _citation.page_last 931 _citation.year 2015 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25540822 _citation.pdbx_database_id_DOI 10.1021/bi501388y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vetting, M.W.' 1 primary 'Al-Obaidi, N.' 2 primary 'Zhao, S.' 3 primary 'San Francisco, B.' 4 primary 'Kim, J.' 5 primary 'Wichelecki, D.J.' 6 primary 'Bouvier, J.T.' 7 primary 'Solbiati, J.O.' 8 primary 'Vu, H.' 9 primary 'Zhang, X.' 10 primary 'Rodionov, D.A.' 11 primary 'Love, J.D.' 12 primary 'Hillerich, B.S.' 13 primary 'Seidel, R.D.' 14 primary 'Quinn, R.J.' 15 primary 'Osterman, A.L.' 16 primary 'Cronan, J.E.' 17 primary 'Jacobson, M.P.' 18 primary 'Gerlt, J.A.' 19 primary 'Almo, S.C.' 20 # _cell.length_a 91.607 _cell.length_b 91.607 _cell.length_c 129.027 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4NGU _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4NGU _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRAP dicarboxylate transporter, DctP subunit' 36008.211 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn D-ALANINE 89.093 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 172 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRAP periplasmic solute binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;S(MSE)AAA(MSE)TVK(MSE)SYNGPPSLEDNAVHAFATTFKELVEKESGGGIVIDLYPNSQLGNEQQR(MSE)EQV (MSE)TGP(MSE)INVASFGG(MSE)ETVFPE(MSE)FATNVPF(MSE)FESYAAAHEFFDNSSF(MSE)DKAGKELRSR TGIELLAVVEEGGFIAFTSKKPVRSPADFKG(MSE)KFRA(MSE)DASQVA(MSE)YEAFGASGTPIPWTEVYLALKTGV ADGQ(MSE)NPPTYIIIGSLYEVQDHLTLANVQYSDQFLLINGELLDSLPDSQRQVIRKAAHEANVKTRQFVESQVDERV KFLASKG(MSE)TVYTPTAEELAQFKELGSPSYIKWLSGQIDTAWIDHA(MSE)EDARKANEAVK ; _entity_poly.pdbx_seq_one_letter_code_can ;SMAAAMTVKMSYNGPPSLEDNAVHAFATTFKELVEKESGGGIVIDLYPNSQLGNEQQRMEQVMTGPMINVASFGGMETVF PEMFATNVPFMFESYAAAHEFFDNSSFMDKAGKELRSRTGIELLAVVEEGGFIAFTSKKPVRSPADFKGMKFRAMDASQV AMYEAFGASGTPIPWTEVYLALKTGVADGQMNPPTYIIIGSLYEVQDHLTLANVQYSDQFLLINGELLDSLPDSQRQVIR KAAHEANVKTRQFVESQVDERVKFLASKGMTVYTPTAEELAQFKELGSPSYIKWLSGQIDTAWIDHAMEDARKANEAVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier EFI-510103 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MSE n 1 3 ALA n 1 4 ALA n 1 5 ALA n 1 6 MSE n 1 7 THR n 1 8 VAL n 1 9 LYS n 1 10 MSE n 1 11 SER n 1 12 TYR n 1 13 ASN n 1 14 GLY n 1 15 PRO n 1 16 PRO n 1 17 SER n 1 18 LEU n 1 19 GLU n 1 20 ASP n 1 21 ASN n 1 22 ALA n 1 23 VAL n 1 24 HIS n 1 25 ALA n 1 26 PHE n 1 27 ALA n 1 28 THR n 1 29 THR n 1 30 PHE n 1 31 LYS n 1 32 GLU n 1 33 LEU n 1 34 VAL n 1 35 GLU n 1 36 LYS n 1 37 GLU n 1 38 SER n 1 39 GLY n 1 40 GLY n 1 41 GLY n 1 42 ILE n 1 43 VAL n 1 44 ILE n 1 45 ASP n 1 46 LEU n 1 47 TYR n 1 48 PRO n 1 49 ASN n 1 50 SER n 1 51 GLN n 1 52 LEU n 1 53 GLY n 1 54 ASN n 1 55 GLU n 1 56 GLN n 1 57 GLN n 1 58 ARG n 1 59 MSE n 1 60 GLU n 1 61 GLN n 1 62 VAL n 1 63 MSE n 1 64 THR n 1 65 GLY n 1 66 PRO n 1 67 MSE n 1 68 ILE n 1 69 ASN n 1 70 VAL n 1 71 ALA n 1 72 SER n 1 73 PHE n 1 74 GLY n 1 75 GLY n 1 76 MSE n 1 77 GLU n 1 78 THR n 1 79 VAL n 1 80 PHE n 1 81 PRO n 1 82 GLU n 1 83 MSE n 1 84 PHE n 1 85 ALA n 1 86 THR n 1 87 ASN n 1 88 VAL n 1 89 PRO n 1 90 PHE n 1 91 MSE n 1 92 PHE n 1 93 GLU n 1 94 SER n 1 95 TYR n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 HIS n 1 100 GLU n 1 101 PHE n 1 102 PHE n 1 103 ASP n 1 104 ASN n 1 105 SER n 1 106 SER n 1 107 PHE n 1 108 MSE n 1 109 ASP n 1 110 LYS n 1 111 ALA n 1 112 GLY n 1 113 LYS n 1 114 GLU n 1 115 LEU n 1 116 ARG n 1 117 SER n 1 118 ARG n 1 119 THR n 1 120 GLY n 1 121 ILE n 1 122 GLU n 1 123 LEU n 1 124 LEU n 1 125 ALA n 1 126 VAL n 1 127 VAL n 1 128 GLU n 1 129 GLU n 1 130 GLY n 1 131 GLY n 1 132 PHE n 1 133 ILE n 1 134 ALA n 1 135 PHE n 1 136 THR n 1 137 SER n 1 138 LYS n 1 139 LYS n 1 140 PRO n 1 141 VAL n 1 142 ARG n 1 143 SER n 1 144 PRO n 1 145 ALA n 1 146 ASP n 1 147 PHE n 1 148 LYS n 1 149 GLY n 1 150 MSE n 1 151 LYS n 1 152 PHE n 1 153 ARG n 1 154 ALA n 1 155 MSE n 1 156 ASP n 1 157 ALA n 1 158 SER n 1 159 GLN n 1 160 VAL n 1 161 ALA n 1 162 MSE n 1 163 TYR n 1 164 GLU n 1 165 ALA n 1 166 PHE n 1 167 GLY n 1 168 ALA n 1 169 SER n 1 170 GLY n 1 171 THR n 1 172 PRO n 1 173 ILE n 1 174 PRO n 1 175 TRP n 1 176 THR n 1 177 GLU n 1 178 VAL n 1 179 TYR n 1 180 LEU n 1 181 ALA n 1 182 LEU n 1 183 LYS n 1 184 THR n 1 185 GLY n 1 186 VAL n 1 187 ALA n 1 188 ASP n 1 189 GLY n 1 190 GLN n 1 191 MSE n 1 192 ASN n 1 193 PRO n 1 194 PRO n 1 195 THR n 1 196 TYR n 1 197 ILE n 1 198 ILE n 1 199 ILE n 1 200 GLY n 1 201 SER n 1 202 LEU n 1 203 TYR n 1 204 GLU n 1 205 VAL n 1 206 GLN n 1 207 ASP n 1 208 HIS n 1 209 LEU n 1 210 THR n 1 211 LEU n 1 212 ALA n 1 213 ASN n 1 214 VAL n 1 215 GLN n 1 216 TYR n 1 217 SER n 1 218 ASP n 1 219 GLN n 1 220 PHE n 1 221 LEU n 1 222 LEU n 1 223 ILE n 1 224 ASN n 1 225 GLY n 1 226 GLU n 1 227 LEU n 1 228 LEU n 1 229 ASP n 1 230 SER n 1 231 LEU n 1 232 PRO n 1 233 ASP n 1 234 SER n 1 235 GLN n 1 236 ARG n 1 237 GLN n 1 238 VAL n 1 239 ILE n 1 240 ARG n 1 241 LYS n 1 242 ALA n 1 243 ALA n 1 244 HIS n 1 245 GLU n 1 246 ALA n 1 247 ASN n 1 248 VAL n 1 249 LYS n 1 250 THR n 1 251 ARG n 1 252 GLN n 1 253 PHE n 1 254 VAL n 1 255 GLU n 1 256 SER n 1 257 GLN n 1 258 VAL n 1 259 ASP n 1 260 GLU n 1 261 ARG n 1 262 VAL n 1 263 LYS n 1 264 PHE n 1 265 LEU n 1 266 ALA n 1 267 SER n 1 268 LYS n 1 269 GLY n 1 270 MSE n 1 271 THR n 1 272 VAL n 1 273 TYR n 1 274 THR n 1 275 PRO n 1 276 THR n 1 277 ALA n 1 278 GLU n 1 279 GLU n 1 280 LEU n 1 281 ALA n 1 282 GLN n 1 283 PHE n 1 284 LYS n 1 285 GLU n 1 286 LEU n 1 287 GLY n 1 288 SER n 1 289 PRO n 1 290 SER n 1 291 TYR n 1 292 ILE n 1 293 LYS n 1 294 TRP n 1 295 LEU n 1 296 SER n 1 297 GLY n 1 298 GLN n 1 299 ILE n 1 300 ASP n 1 301 THR n 1 302 ALA n 1 303 TRP n 1 304 ILE n 1 305 ASP n 1 306 HIS n 1 307 ALA n 1 308 MSE n 1 309 GLU n 1 310 ASP n 1 311 ALA n 1 312 ARG n 1 313 LYS n 1 314 ALA n 1 315 ASN n 1 316 GLU n 1 317 ALA n 1 318 VAL n 1 319 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Dde_1548 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain G20 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio alaskensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 207559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q311Q1_DESDG _struct_ref.pdbx_db_accession Q311Q1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAAMTVKMSYNGPPSLEDNAVHAFATTFKELVEKESGGGIVIDLYPNSQLGNEQQRMEQVMTGPMINVASFGGMETVFPE MFATNVPFMFESYAAAHEFFDNSSFMDKAGKELRSRTGIELLAVVEEGGFIAFTSKKPVRSPADFKGMKFRAMDASQVAM YEAFGASGTPIPWTEVYLALKTGVADGQMNPPTYIIIGSLYEVQDHLTLANVQYSDQFLLINGELLDSLPDSQRQVIRKA AHEANVKTRQFVESQVDERVKFLASKGMTVYTPTAEELAQFKELGSPSYIKWLSGQIDTAWIDHAMEDARKANEAVK ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NGU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 319 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q311Q1 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 345 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 346 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NGU SER A 1 ? UNP Q311Q1 ? ? 'EXPRESSION TAG' 28 1 1 4NGU MSE A 2 ? UNP Q311Q1 ? ? 'EXPRESSION TAG' 29 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NGU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.76 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;36.8 mg/mL protein in 10 mM HEPES, pH 7.5, 5 mM DTT, 10 mM D-Ala-D-Ala, reservoir: 0.2 M sodium chloride, 0.1 M acetate, pH 4.5, 1.26 M ammonium sulfate, cryoprotection: 4:1 1.8 M lithium sulfate:reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2013-10-17 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'diamond(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 4NGU _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 74.695 _reflns.number_all 19702 _reflns.number_obs 19702 _reflns.pdbx_netI_over_sigmaI 13.3 _reflns.pdbx_Rsym_value 0.168 _reflns.pdbx_redundancy 15.6 _reflns.percent_possible_obs 100.0 _reflns.B_iso_Wilson_estimate 34.76 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.pdbx_Rmerge_I_obs 0.168 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.640 ? 45507 ? 0.764 1.0 0.764 ? 16.1 ? 2819 100.0 1 1 2.640 2.800 ? 42768 ? 0.592 1.3 0.592 ? 16.2 ? 2648 100.0 2 1 2.800 2.990 ? 40715 ? 0.404 1.9 0.404 ? 16.1 ? 2527 100.0 3 1 2.990 3.230 ? 37540 ? 0.270 2.8 0.270 ? 16.0 ? 2342 100.0 4 1 3.230 3.540 ? 34313 ? 0.192 3.9 0.192 ? 15.8 ? 2169 100.0 5 1 3.540 3.950 ? 29571 ? 0.158 4.7 0.158 ? 14.9 ? 1984 100.0 6 1 3.950 4.560 ? 27070 ? 0.098 7.2 0.098 ? 15.3 ? 1764 100.0 7 1 4.560 5.590 ? 22725 ? 0.087 7.9 0.087 ? 15.0 ? 1511 100.0 8 1 5.590 7.910 ? 17659 ? 0.082 8.4 0.082 ? 14.7 ? 1203 100.0 9 1 7.910 129.027 ? 9381 ? 0.049 13.1 0.049 ? 12.8 ? 735 99.8 10 1 # _refine.entry_id 4NGU _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 40.968 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.35 _refine.ls_number_reflns_obs 19519 _refine.ls_number_reflns_all 19519 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.1923 _refine.ls_R_factor_obs 0.1923 _refine.ls_R_factor_R_work 0.1897 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2421 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1000 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.8886 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8385 _refine.B_iso_max 82.810 _refine.B_iso_min 6.150 _refine.pdbx_overall_phase_error 22.2500 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2454 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 2643 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 40.968 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2526 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3418 1.113 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 373 0.080 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 448 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 932 14.082 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.5000 2.6318 7 100.0 2592 . 0.2113 0.2821 . 159 . 2751 . . 'X-RAY DIFFRACTION' 2.6318 2.7967 7 100.0 2583 . 0.2093 0.2933 . 151 . 2734 . . 'X-RAY DIFFRACTION' 2.7967 3.0125 7 100.0 2620 . 0.2063 0.2512 . 147 . 2767 . . 'X-RAY DIFFRACTION' 3.0125 3.3156 7 100.0 2634 . 0.2071 0.2628 . 139 . 2773 . . 'X-RAY DIFFRACTION' 3.3156 3.7951 7 96.0 2561 . 0.2175 0.2772 . 129 . 2690 . . 'X-RAY DIFFRACTION' 3.7951 4.7802 7 99.0 2673 . 0.1595 0.2108 . 142 . 2815 . . 'X-RAY DIFFRACTION' 4.7802 40.9734 7 100.0 2856 . 0.1715 0.2009 . 133 . 2989 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NGU _struct.title ;Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio alaskensis G20 (Dde_1548), Target EFI-510103, with bound D-Ala-D-Ala ; _struct.pdbx_descriptor 'TRAP dicarboxylate transporter, DctP subunit' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NGU _struct_keywords.text 'TRAP periplasmic solute binding family, Enzyme Function Initiative, EFI, structural genomics, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 21 ? SER A 38 ? ASN A 48 SER A 65 1 ? 18 HELX_P HELX_P2 2 ASN A 54 ? GLY A 65 ? ASN A 81 GLY A 92 1 ? 12 HELX_P HELX_P3 3 SER A 72 ? GLU A 77 ? SER A 99 GLU A 104 1 ? 6 HELX_P HELX_P4 4 THR A 78 ? VAL A 79 ? THR A 105 VAL A 106 5 ? 2 HELX_P HELX_P5 5 PHE A 80 ? ASN A 87 ? PHE A 107 ASN A 114 5 ? 8 HELX_P HELX_P6 6 SER A 94 ? SER A 105 ? SER A 121 SER A 132 1 ? 12 HELX_P HELX_P7 7 SER A 105 ? GLY A 120 ? SER A 132 GLY A 147 1 ? 16 HELX_P HELX_P8 8 SER A 143 ? LYS A 148 ? SER A 170 LYS A 175 5 ? 6 HELX_P HELX_P9 9 ASP A 156 ? PHE A 166 ? ASP A 183 PHE A 193 1 ? 11 HELX_P HELX_P10 10 PRO A 174 ? THR A 176 ? PRO A 201 THR A 203 5 ? 3 HELX_P HELX_P11 11 GLU A 177 ? THR A 184 ? GLU A 204 THR A 211 1 ? 8 HELX_P HELX_P12 12 PRO A 193 ? GLY A 200 ? PRO A 220 GLY A 227 1 ? 8 HELX_P HELX_P13 14 GLY A 225 ? LEU A 231 ? GLY A 252 LEU A 258 1 ? 7 HELX_P HELX_P14 15 PRO A 232 ? SER A 256 ? PRO A 259 SER A 283 1 ? 25 HELX_P HELX_P15 16 GLN A 257 ? LYS A 268 ? GLN A 284 LYS A 295 1 ? 12 HELX_P HELX_P16 17 THR A 276 ? SER A 296 ? THR A 303 SER A 323 1 ? 21 HELX_P HELX_P17 18 ASP A 300 ? VAL A 318 ? ASP A 327 VAL A 345 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 2 C ? ? ? 1_555 A ALA 3 N ? ? A MSE 29 A ALA 30 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A ALA 5 C ? ? ? 1_555 A MSE 6 N ? ? A ALA 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A MSE 6 C ? ? ? 1_555 A THR 7 N ? ? A MSE 33 A THR 34 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A LYS 9 C ? ? ? 1_555 A MSE 10 N ? ? A LYS 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A MSE 10 C ? ? ? 1_555 A SER 11 N ? ? A MSE 37 A SER 38 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A ARG 58 C ? ? ? 1_555 A MSE 59 N ? ? A ARG 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 59 C ? ? ? 1_555 A GLU 60 N ? ? A MSE 86 A GLU 87 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A VAL 62 C ? ? ? 1_555 A MSE 63 N ? ? A VAL 89 A MSE 90 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A MSE 63 C ? ? ? 1_555 A THR 64 N ? ? A MSE 90 A THR 91 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? A PRO 66 C ? ? ? 1_555 A MSE 67 N ? ? A PRO 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A MSE 67 C ? ? ? 1_555 A ILE 68 N ? ? A MSE 94 A ILE 95 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A GLY 75 C ? ? ? 1_555 A MSE 76 N ? ? A GLY 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? A MSE 76 C ? ? ? 1_555 A GLU 77 N ? ? A MSE 103 A GLU 104 1_555 ? ? ? ? ? ? ? 1.325 ? covale14 covale ? ? A GLU 82 C ? ? ? 1_555 A MSE 83 N ? ? A GLU 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.330 ? covale15 covale ? ? A MSE 83 C ? ? ? 1_555 A PHE 84 N ? ? A MSE 110 A PHE 111 1_555 ? ? ? ? ? ? ? 1.333 ? covale16 covale ? ? A PHE 90 C ? ? ? 1_555 A MSE 91 N ? ? A PHE 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.319 ? covale17 covale ? ? A MSE 91 C ? ? ? 1_555 A PHE 92 N ? ? A MSE 118 A PHE 119 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale ? ? A PHE 107 C ? ? ? 1_555 A MSE 108 N ? ? A PHE 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.328 ? covale19 covale ? ? A MSE 108 C ? ? ? 1_555 A ASP 109 N ? ? A MSE 135 A ASP 136 1_555 ? ? ? ? ? ? ? 1.338 ? covale20 covale ? ? A GLY 149 C ? ? ? 1_555 A MSE 150 N ? ? A GLY 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.332 ? covale21 covale ? ? A MSE 150 C ? ? ? 1_555 A LYS 151 N ? ? A MSE 177 A LYS 178 1_555 ? ? ? ? ? ? ? 1.332 ? covale22 covale ? ? A ALA 154 C ? ? ? 1_555 A MSE 155 N ? ? A ALA 181 A MSE 182 1_555 ? ? ? ? ? ? ? 1.322 ? covale23 covale ? ? A MSE 155 C ? ? ? 1_555 A ASP 156 N ? ? A MSE 182 A ASP 183 1_555 ? ? ? ? ? ? ? 1.325 ? covale24 covale ? ? A ALA 161 C ? ? ? 1_555 A MSE 162 N ? ? A ALA 188 A MSE 189 1_555 ? ? ? ? ? ? ? 1.326 ? covale25 covale ? ? A MSE 162 C ? ? ? 1_555 A TYR 163 N ? ? A MSE 189 A TYR 190 1_555 ? ? ? ? ? ? ? 1.333 ? covale26 covale ? ? A GLN 190 C ? ? ? 1_555 A MSE 191 N ? ? A GLN 217 A MSE 218 1_555 ? ? ? ? ? ? ? 1.335 ? covale27 covale ? ? A MSE 191 C ? ? ? 1_555 A ASN 192 N ? ? A MSE 218 A ASN 219 1_555 ? ? ? ? ? ? ? 1.327 ? covale28 covale ? ? A GLY 269 C ? ? ? 1_555 A MSE 270 N ? ? A GLY 296 A MSE 297 1_555 ? ? ? ? ? ? ? 1.320 ? covale29 covale ? ? A MSE 270 C ? ? ? 1_555 A THR 271 N ? ? A MSE 297 A THR 298 1_555 ? ? ? ? ? ? ? 1.326 ? covale30 covale ? ? A ALA 307 C ? ? ? 1_555 A MSE 308 N ? ? A ALA 334 A MSE 335 1_555 ? ? ? ? ? ? ? 1.310 ? covale31 covale ? ? A MSE 308 C ? ? ? 1_555 A GLU 309 N ? ? A MSE 335 A GLU 336 1_555 ? ? ? ? ? ? ? 1.297 ? covale32 covale ? ? C DAL . C ? ? ? 1_555 D DAL . N ? ? A DAL 402 A DAL 403 1_555 ? ? ? ? ? ? ? 1.340 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? TYR A 47 ? ILE A 69 TYR A 74 A 2 MSE A 6 ? SER A 11 ? MSE A 33 SER A 38 A 3 ILE A 68 ? ALA A 71 ? ILE A 95 ALA A 98 A 4 ASP A 218 ? ASN A 224 ? ASP A 245 ASN A 251 A 5 ILE A 121 ? GLU A 128 ? ILE A 148 GLU A 155 B 1 GLN A 190 ? ASN A 192 ? GLN A 217 ASN A 219 B 2 ALA A 134 ? SER A 137 ? ALA A 161 SER A 164 B 3 HIS A 208 ? THR A 210 ? HIS A 235 THR A 237 B 4 THR A 271 ? TYR A 273 ? THR A 298 TYR A 300 C 1 LYS A 151 ? ALA A 154 ? LYS A 178 ALA A 181 C 2 SER A 169 ? PRO A 172 ? SER A 196 PRO A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 43 ? O VAL A 70 N MSE A 6 ? N MSE A 33 A 2 3 N LYS A 9 ? N LYS A 36 O ILE A 68 ? O ILE A 95 A 3 4 N ASN A 69 ? N ASN A 96 O LEU A 222 ? O LEU A 249 A 4 5 O ILE A 223 ? O ILE A 250 N GLU A 122 ? N GLU A 149 B 1 2 O GLN A 190 ? O GLN A 217 N THR A 136 ? N THR A 163 B 2 3 N PHE A 135 ? N PHE A 162 O THR A 210 ? O THR A 237 B 3 4 N LEU A 209 ? N LEU A 236 O THR A 271 ? O THR A 298 C 1 2 N ALA A 154 ? N ALA A 181 O THR A 171 ? O THR A 198 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 401' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 404' AC3 Software ? ? ? ? 15 'BINDING SITE FOR LINKED RESIDUES A 402 to 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 131 ? GLY A 158 . ? 1_555 ? 2 AC1 4 PRO A 194 ? PRO A 221 . ? 1_555 ? 3 AC1 4 THR A 195 ? THR A 222 . ? 1_555 ? 4 AC1 4 ARG A 261 ? ARG A 288 . ? 1_555 ? 5 AC2 5 ASP A 233 ? ASP A 260 . ? 1_555 ? 6 AC2 5 ARG A 236 ? ARG A 263 . ? 1_555 ? 7 AC2 5 GLN A 237 ? GLN A 264 . ? 1_555 ? 8 AC2 5 ARG A 240 ? ARG A 267 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 645 . ? 1_555 ? 10 AC3 15 ASN A 13 ? ASN A 40 . ? 1_555 ? 11 AC3 15 SER A 72 ? SER A 99 . ? 1_555 ? 12 AC3 15 GLU A 129 ? GLU A 156 . ? 1_555 ? 13 AC3 15 ILE A 133 ? ILE A 160 . ? 1_555 ? 14 AC3 15 ARG A 153 ? ARG A 180 . ? 1_555 ? 15 AC3 15 MSE A 155 ? MSE A 182 . ? 1_555 ? 16 AC3 15 TRP A 175 ? TRP A 202 . ? 1_555 ? 17 AC3 15 ASN A 192 ? ASN A 219 . ? 1_555 ? 18 AC3 15 TYR A 196 ? TYR A 223 . ? 1_555 ? 19 AC3 15 SER A 217 ? SER A 244 . ? 1_555 ? 20 AC3 15 ASP A 218 ? ASP A 245 . ? 1_555 ? 21 AC3 15 GLN A 219 ? GLN A 246 . ? 1_555 ? 22 AC3 15 HOH F . ? HOH A 506 . ? 1_555 ? 23 AC3 15 HOH F . ? HOH A 515 . ? 1_555 ? 24 AC3 15 HOH F . ? HOH A 667 . ? 1_555 ? # _atom_sites.entry_id 4NGU _atom_sites.fract_transf_matrix[1][1] 0.010916 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010916 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007750 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 28 ? ? ? A . n A 1 2 MSE 2 29 29 MSE MSE A . n A 1 3 ALA 3 30 30 ALA ALA A . n A 1 4 ALA 4 31 31 ALA ALA A . n A 1 5 ALA 5 32 32 ALA ALA A . n A 1 6 MSE 6 33 33 MSE MSE A . n A 1 7 THR 7 34 34 THR THR A . n A 1 8 VAL 8 35 35 VAL VAL A . n A 1 9 LYS 9 36 36 LYS LYS A . n A 1 10 MSE 10 37 37 MSE MSE A . n A 1 11 SER 11 38 38 SER SER A . n A 1 12 TYR 12 39 39 TYR TYR A . n A 1 13 ASN 13 40 40 ASN ASN A . n A 1 14 GLY 14 41 41 GLY GLY A . n A 1 15 PRO 15 42 42 PRO PRO A . n A 1 16 PRO 16 43 43 PRO PRO A . n A 1 17 SER 17 44 44 SER SER A . n A 1 18 LEU 18 45 45 LEU LEU A . n A 1 19 GLU 19 46 46 GLU GLU A . n A 1 20 ASP 20 47 47 ASP ASP A . n A 1 21 ASN 21 48 48 ASN ASN A . n A 1 22 ALA 22 49 49 ALA ALA A . n A 1 23 VAL 23 50 50 VAL VAL A . n A 1 24 HIS 24 51 51 HIS HIS A . n A 1 25 ALA 25 52 52 ALA ALA A . n A 1 26 PHE 26 53 53 PHE PHE A . n A 1 27 ALA 27 54 54 ALA ALA A . n A 1 28 THR 28 55 55 THR THR A . n A 1 29 THR 29 56 56 THR THR A . n A 1 30 PHE 30 57 57 PHE PHE A . n A 1 31 LYS 31 58 58 LYS LYS A . n A 1 32 GLU 32 59 59 GLU GLU A . n A 1 33 LEU 33 60 60 LEU LEU A . n A 1 34 VAL 34 61 61 VAL VAL A . n A 1 35 GLU 35 62 62 GLU GLU A . n A 1 36 LYS 36 63 63 LYS LYS A . n A 1 37 GLU 37 64 64 GLU GLU A . n A 1 38 SER 38 65 65 SER SER A . n A 1 39 GLY 39 66 66 GLY GLY A . n A 1 40 GLY 40 67 67 GLY GLY A . n A 1 41 GLY 41 68 68 GLY GLY A . n A 1 42 ILE 42 69 69 ILE ILE A . n A 1 43 VAL 43 70 70 VAL VAL A . n A 1 44 ILE 44 71 71 ILE ILE A . n A 1 45 ASP 45 72 72 ASP ASP A . n A 1 46 LEU 46 73 73 LEU LEU A . n A 1 47 TYR 47 74 74 TYR TYR A . n A 1 48 PRO 48 75 75 PRO PRO A . n A 1 49 ASN 49 76 76 ASN ASN A . n A 1 50 SER 50 77 77 SER SER A . n A 1 51 GLN 51 78 78 GLN GLN A . n A 1 52 LEU 52 79 79 LEU LEU A . n A 1 53 GLY 53 80 80 GLY GLY A . n A 1 54 ASN 54 81 81 ASN ASN A . n A 1 55 GLU 55 82 82 GLU GLU A . n A 1 56 GLN 56 83 83 GLN GLN A . n A 1 57 GLN 57 84 84 GLN GLN A . n A 1 58 ARG 58 85 85 ARG ARG A . n A 1 59 MSE 59 86 86 MSE MSE A . n A 1 60 GLU 60 87 87 GLU GLU A . n A 1 61 GLN 61 88 88 GLN GLN A . n A 1 62 VAL 62 89 89 VAL VAL A . n A 1 63 MSE 63 90 90 MSE MSE A . n A 1 64 THR 64 91 91 THR THR A . n A 1 65 GLY 65 92 92 GLY GLY A . n A 1 66 PRO 66 93 93 PRO PRO A . n A 1 67 MSE 67 94 94 MSE MSE A . n A 1 68 ILE 68 95 95 ILE ILE A . n A 1 69 ASN 69 96 96 ASN ASN A . n A 1 70 VAL 70 97 97 VAL VAL A . n A 1 71 ALA 71 98 98 ALA ALA A . n A 1 72 SER 72 99 99 SER SER A . n A 1 73 PHE 73 100 100 PHE PHE A . n A 1 74 GLY 74 101 101 GLY GLY A . n A 1 75 GLY 75 102 102 GLY GLY A . n A 1 76 MSE 76 103 103 MSE MSE A . n A 1 77 GLU 77 104 104 GLU GLU A . n A 1 78 THR 78 105 105 THR THR A . n A 1 79 VAL 79 106 106 VAL VAL A . n A 1 80 PHE 80 107 107 PHE PHE A . n A 1 81 PRO 81 108 108 PRO PRO A . n A 1 82 GLU 82 109 109 GLU GLU A . n A 1 83 MSE 83 110 110 MSE MSE A . n A 1 84 PHE 84 111 111 PHE PHE A . n A 1 85 ALA 85 112 112 ALA ALA A . n A 1 86 THR 86 113 113 THR THR A . n A 1 87 ASN 87 114 114 ASN ASN A . n A 1 88 VAL 88 115 115 VAL VAL A . n A 1 89 PRO 89 116 116 PRO PRO A . n A 1 90 PHE 90 117 117 PHE PHE A . n A 1 91 MSE 91 118 118 MSE MSE A . n A 1 92 PHE 92 119 119 PHE PHE A . n A 1 93 GLU 93 120 120 GLU GLU A . n A 1 94 SER 94 121 121 SER SER A . n A 1 95 TYR 95 122 122 TYR TYR A . n A 1 96 ALA 96 123 123 ALA ALA A . n A 1 97 ALA 97 124 124 ALA ALA A . n A 1 98 ALA 98 125 125 ALA ALA A . n A 1 99 HIS 99 126 126 HIS HIS A . n A 1 100 GLU 100 127 127 GLU GLU A . n A 1 101 PHE 101 128 128 PHE PHE A . n A 1 102 PHE 102 129 129 PHE PHE A . n A 1 103 ASP 103 130 130 ASP ASP A . n A 1 104 ASN 104 131 131 ASN ASN A . n A 1 105 SER 105 132 132 SER SER A . n A 1 106 SER 106 133 133 SER SER A . n A 1 107 PHE 107 134 134 PHE PHE A . n A 1 108 MSE 108 135 135 MSE MSE A . n A 1 109 ASP 109 136 136 ASP ASP A . n A 1 110 LYS 110 137 137 LYS LYS A . n A 1 111 ALA 111 138 138 ALA ALA A . n A 1 112 GLY 112 139 139 GLY GLY A . n A 1 113 LYS 113 140 140 LYS LYS A . n A 1 114 GLU 114 141 141 GLU GLU A . n A 1 115 LEU 115 142 142 LEU LEU A . n A 1 116 ARG 116 143 143 ARG ARG A . n A 1 117 SER 117 144 144 SER SER A . n A 1 118 ARG 118 145 145 ARG ARG A . n A 1 119 THR 119 146 146 THR THR A . n A 1 120 GLY 120 147 147 GLY GLY A . n A 1 121 ILE 121 148 148 ILE ILE A . n A 1 122 GLU 122 149 149 GLU GLU A . n A 1 123 LEU 123 150 150 LEU LEU A . n A 1 124 LEU 124 151 151 LEU LEU A . n A 1 125 ALA 125 152 152 ALA ALA A . n A 1 126 VAL 126 153 153 VAL VAL A . n A 1 127 VAL 127 154 154 VAL VAL A . n A 1 128 GLU 128 155 155 GLU GLU A . n A 1 129 GLU 129 156 156 GLU GLU A . n A 1 130 GLY 130 157 157 GLY GLY A . n A 1 131 GLY 131 158 158 GLY GLY A . n A 1 132 PHE 132 159 159 PHE PHE A . n A 1 133 ILE 133 160 160 ILE ILE A . n A 1 134 ALA 134 161 161 ALA ALA A . n A 1 135 PHE 135 162 162 PHE PHE A . n A 1 136 THR 136 163 163 THR THR A . n A 1 137 SER 137 164 164 SER SER A . n A 1 138 LYS 138 165 165 LYS LYS A . n A 1 139 LYS 139 166 166 LYS LYS A . n A 1 140 PRO 140 167 167 PRO PRO A . n A 1 141 VAL 141 168 168 VAL VAL A . n A 1 142 ARG 142 169 169 ARG ARG A . n A 1 143 SER 143 170 170 SER SER A . n A 1 144 PRO 144 171 171 PRO PRO A . n A 1 145 ALA 145 172 172 ALA ALA A . n A 1 146 ASP 146 173 173 ASP ASP A . n A 1 147 PHE 147 174 174 PHE PHE A . n A 1 148 LYS 148 175 175 LYS LYS A . n A 1 149 GLY 149 176 176 GLY GLY A . n A 1 150 MSE 150 177 177 MSE MSE A . n A 1 151 LYS 151 178 178 LYS LYS A . n A 1 152 PHE 152 179 179 PHE PHE A . n A 1 153 ARG 153 180 180 ARG ARG A . n A 1 154 ALA 154 181 181 ALA ALA A . n A 1 155 MSE 155 182 182 MSE MSE A . n A 1 156 ASP 156 183 183 ASP ASP A . n A 1 157 ALA 157 184 184 ALA ALA A . n A 1 158 SER 158 185 185 SER SER A . n A 1 159 GLN 159 186 186 GLN GLN A . n A 1 160 VAL 160 187 187 VAL VAL A . n A 1 161 ALA 161 188 188 ALA ALA A . n A 1 162 MSE 162 189 189 MSE MSE A . n A 1 163 TYR 163 190 190 TYR TYR A . n A 1 164 GLU 164 191 191 GLU GLU A . n A 1 165 ALA 165 192 192 ALA ALA A . n A 1 166 PHE 166 193 193 PHE PHE A . n A 1 167 GLY 167 194 194 GLY GLY A . n A 1 168 ALA 168 195 195 ALA ALA A . n A 1 169 SER 169 196 196 SER SER A . n A 1 170 GLY 170 197 197 GLY GLY A . n A 1 171 THR 171 198 198 THR THR A . n A 1 172 PRO 172 199 199 PRO PRO A . n A 1 173 ILE 173 200 200 ILE ILE A . n A 1 174 PRO 174 201 201 PRO PRO A . n A 1 175 TRP 175 202 202 TRP TRP A . n A 1 176 THR 176 203 203 THR THR A . n A 1 177 GLU 177 204 204 GLU GLU A . n A 1 178 VAL 178 205 205 VAL VAL A . n A 1 179 TYR 179 206 206 TYR TYR A . n A 1 180 LEU 180 207 207 LEU LEU A . n A 1 181 ALA 181 208 208 ALA ALA A . n A 1 182 LEU 182 209 209 LEU LEU A . n A 1 183 LYS 183 210 210 LYS LYS A . n A 1 184 THR 184 211 211 THR THR A . n A 1 185 GLY 185 212 212 GLY GLY A . n A 1 186 VAL 186 213 213 VAL VAL A . n A 1 187 ALA 187 214 214 ALA ALA A . n A 1 188 ASP 188 215 215 ASP ASP A . n A 1 189 GLY 189 216 216 GLY GLY A . n A 1 190 GLN 190 217 217 GLN GLN A . n A 1 191 MSE 191 218 218 MSE MSE A . n A 1 192 ASN 192 219 219 ASN ASN A . n A 1 193 PRO 193 220 220 PRO PRO A . n A 1 194 PRO 194 221 221 PRO PRO A . n A 1 195 THR 195 222 222 THR THR A . n A 1 196 TYR 196 223 223 TYR TYR A . n A 1 197 ILE 197 224 224 ILE ILE A . n A 1 198 ILE 198 225 225 ILE ILE A . n A 1 199 ILE 199 226 226 ILE ILE A . n A 1 200 GLY 200 227 227 GLY GLY A . n A 1 201 SER 201 228 228 SER ALA A . n A 1 202 LEU 202 229 229 LEU LEU A . n A 1 203 TYR 203 230 230 TYR TYR A . n A 1 204 GLU 204 231 231 GLU GLU A . n A 1 205 VAL 205 232 232 VAL VAL A . n A 1 206 GLN 206 233 233 GLN GLN A . n A 1 207 ASP 207 234 234 ASP ASP A . n A 1 208 HIS 208 235 235 HIS HIS A . n A 1 209 LEU 209 236 236 LEU LEU A . n A 1 210 THR 210 237 237 THR THR A . n A 1 211 LEU 211 238 238 LEU LEU A . n A 1 212 ALA 212 239 239 ALA ALA A . n A 1 213 ASN 213 240 240 ASN ASN A . n A 1 214 VAL 214 241 241 VAL VAL A . n A 1 215 GLN 215 242 242 GLN GLN A . n A 1 216 TYR 216 243 243 TYR TYR A . n A 1 217 SER 217 244 244 SER SER A . n A 1 218 ASP 218 245 245 ASP ASP A . n A 1 219 GLN 219 246 246 GLN GLN A . n A 1 220 PHE 220 247 247 PHE PHE A . n A 1 221 LEU 221 248 248 LEU LEU A . n A 1 222 LEU 222 249 249 LEU LEU A . n A 1 223 ILE 223 250 250 ILE ILE A . n A 1 224 ASN 224 251 251 ASN ASN A . n A 1 225 GLY 225 252 252 GLY GLY A . n A 1 226 GLU 226 253 253 GLU GLU A . n A 1 227 LEU 227 254 254 LEU LEU A . n A 1 228 LEU 228 255 255 LEU LEU A . n A 1 229 ASP 229 256 256 ASP ASP A . n A 1 230 SER 230 257 257 SER SER A . n A 1 231 LEU 231 258 258 LEU LEU A . n A 1 232 PRO 232 259 259 PRO PRO A . n A 1 233 ASP 233 260 260 ASP ASP A . n A 1 234 SER 234 261 261 SER SER A . n A 1 235 GLN 235 262 262 GLN GLN A . n A 1 236 ARG 236 263 263 ARG ARG A . n A 1 237 GLN 237 264 264 GLN GLN A . n A 1 238 VAL 238 265 265 VAL VAL A . n A 1 239 ILE 239 266 266 ILE ILE A . n A 1 240 ARG 240 267 267 ARG ARG A . n A 1 241 LYS 241 268 268 LYS LYS A . n A 1 242 ALA 242 269 269 ALA ALA A . n A 1 243 ALA 243 270 270 ALA ALA A . n A 1 244 HIS 244 271 271 HIS HIS A . n A 1 245 GLU 245 272 272 GLU GLU A . n A 1 246 ALA 246 273 273 ALA ALA A . n A 1 247 ASN 247 274 274 ASN ASN A . n A 1 248 VAL 248 275 275 VAL VAL A . n A 1 249 LYS 249 276 276 LYS LYS A . n A 1 250 THR 250 277 277 THR THR A . n A 1 251 ARG 251 278 278 ARG ARG A . n A 1 252 GLN 252 279 279 GLN GLN A . n A 1 253 PHE 253 280 280 PHE PHE A . n A 1 254 VAL 254 281 281 VAL VAL A . n A 1 255 GLU 255 282 282 GLU GLU A . n A 1 256 SER 256 283 283 SER SER A . n A 1 257 GLN 257 284 284 GLN GLN A . n A 1 258 VAL 258 285 285 VAL VAL A . n A 1 259 ASP 259 286 286 ASP ASP A . n A 1 260 GLU 260 287 287 GLU GLU A . n A 1 261 ARG 261 288 288 ARG ARG A . n A 1 262 VAL 262 289 289 VAL VAL A . n A 1 263 LYS 263 290 290 LYS LYS A . n A 1 264 PHE 264 291 291 PHE PHE A . n A 1 265 LEU 265 292 292 LEU LEU A . n A 1 266 ALA 266 293 293 ALA ALA A . n A 1 267 SER 267 294 294 SER SER A . n A 1 268 LYS 268 295 295 LYS LYS A . n A 1 269 GLY 269 296 296 GLY GLY A . n A 1 270 MSE 270 297 297 MSE MSE A . n A 1 271 THR 271 298 298 THR THR A . n A 1 272 VAL 272 299 299 VAL VAL A . n A 1 273 TYR 273 300 300 TYR TYR A . n A 1 274 THR 274 301 301 THR THR A . n A 1 275 PRO 275 302 302 PRO PRO A . n A 1 276 THR 276 303 303 THR THR A . n A 1 277 ALA 277 304 304 ALA ALA A . n A 1 278 GLU 278 305 305 GLU GLU A . n A 1 279 GLU 279 306 306 GLU GLU A . n A 1 280 LEU 280 307 307 LEU LEU A . n A 1 281 ALA 281 308 308 ALA ALA A . n A 1 282 GLN 282 309 309 GLN GLN A . n A 1 283 PHE 283 310 310 PHE PHE A . n A 1 284 LYS 284 311 311 LYS LYS A . n A 1 285 GLU 285 312 312 GLU GLU A . n A 1 286 LEU 286 313 313 LEU LEU A . n A 1 287 GLY 287 314 314 GLY GLY A . n A 1 288 SER 288 315 315 SER SER A . n A 1 289 PRO 289 316 316 PRO PRO A . n A 1 290 SER 290 317 317 SER SER A . n A 1 291 TYR 291 318 318 TYR TYR A . n A 1 292 ILE 292 319 319 ILE ILE A . n A 1 293 LYS 293 320 320 LYS LYS A . n A 1 294 TRP 294 321 321 TRP TRP A . n A 1 295 LEU 295 322 322 LEU LEU A . n A 1 296 SER 296 323 323 SER SER A . n A 1 297 GLY 297 324 324 GLY GLY A . n A 1 298 GLN 298 325 325 GLN GLN A . n A 1 299 ILE 299 326 326 ILE ILE A . n A 1 300 ASP 300 327 327 ASP ASP A . n A 1 301 THR 301 328 328 THR THR A . n A 1 302 ALA 302 329 329 ALA ALA A . n A 1 303 TRP 303 330 330 TRP TRP A . n A 1 304 ILE 304 331 331 ILE ILE A . n A 1 305 ASP 305 332 332 ASP ASP A . n A 1 306 HIS 306 333 333 HIS HIS A . n A 1 307 ALA 307 334 334 ALA ALA A . n A 1 308 MSE 308 335 335 MSE MSE A . n A 1 309 GLU 309 336 336 GLU GLU A . n A 1 310 ASP 310 337 337 ASP ASP A . n A 1 311 ALA 311 338 338 ALA ALA A . n A 1 312 ARG 312 339 339 ARG ARG A . n A 1 313 LYS 313 340 340 LYS LYS A . n A 1 314 ALA 314 341 341 ALA ALA A . n A 1 315 ASN 315 342 342 ASN ASN A . n A 1 316 GLU 316 343 343 GLU GLU A . n A 1 317 ALA 317 344 344 ALA ALA A . n A 1 318 VAL 318 345 345 VAL VAL A . n A 1 319 LYS 319 346 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'Enzyme Function Initiative' _pdbx_SG_project.full_name_of_center ? _pdbx_SG_project.initial_of_center ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 29 ? MET SELENOMETHIONINE 2 A MSE 6 A MSE 33 ? MET SELENOMETHIONINE 3 A MSE 10 A MSE 37 ? MET SELENOMETHIONINE 4 A MSE 59 A MSE 86 ? MET SELENOMETHIONINE 5 A MSE 63 A MSE 90 ? MET SELENOMETHIONINE 6 A MSE 67 A MSE 94 ? MET SELENOMETHIONINE 7 A MSE 76 A MSE 103 ? MET SELENOMETHIONINE 8 A MSE 83 A MSE 110 ? MET SELENOMETHIONINE 9 A MSE 91 A MSE 118 ? MET SELENOMETHIONINE 10 A MSE 108 A MSE 135 ? MET SELENOMETHIONINE 11 A MSE 150 A MSE 177 ? MET SELENOMETHIONINE 12 A MSE 155 A MSE 182 ? MET SELENOMETHIONINE 13 A MSE 162 A MSE 189 ? MET SELENOMETHIONINE 14 A MSE 191 A MSE 218 ? MET SELENOMETHIONINE 15 A MSE 270 A MSE 297 ? MET SELENOMETHIONINE 16 A MSE 308 A MSE 335 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2015-02-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 PHENIX AUTOSOLVE ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4NGU _pdbx_entry_details.nonpolymer_details 'THIS ENTRY CONTAINS THE LIGAND D-ALANINE-D-ALANINE.' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 77 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 665 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 93 ? ? -69.97 85.81 2 1 PHE A 107 ? ? -152.69 67.77 3 1 SER A 164 ? ? 179.34 170.45 4 1 THR A 211 ? ? -77.36 31.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 228 ? OG ? A SER 201 OG 2 1 Y 1 A GLU 343 ? CG ? A GLU 316 CG 3 1 Y 1 A GLU 343 ? CD ? A GLU 316 CD 4 1 Y 1 A GLU 343 ? OE1 ? A GLU 316 OE1 5 1 Y 1 A GLU 343 ? OE2 ? A GLU 316 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 28 ? A SER 1 2 1 Y 1 A LYS 346 ? A LYS 319 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 D-ALANINE DAL 4 'SULFATE ION' SO4 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 401 1 CL CL A . C 3 DAL 1 402 1 DAL DAL A . D 3 DAL 1 403 2 DAL DAL A . E 4 SO4 1 404 1 SO4 SO4 A . F 5 HOH 1 501 2 HOH HOH A . F 5 HOH 2 502 5 HOH HOH A . F 5 HOH 3 503 6 HOH HOH A . F 5 HOH 4 504 7 HOH HOH A . F 5 HOH 5 505 8 HOH HOH A . F 5 HOH 6 506 9 HOH HOH A . F 5 HOH 7 507 10 HOH HOH A . F 5 HOH 8 508 11 HOH HOH A . F 5 HOH 9 509 12 HOH HOH A . F 5 HOH 10 510 13 HOH HOH A . F 5 HOH 11 511 14 HOH HOH A . F 5 HOH 12 512 15 HOH HOH A . F 5 HOH 13 513 16 HOH HOH A . F 5 HOH 14 514 17 HOH HOH A . F 5 HOH 15 515 20 HOH HOH A . F 5 HOH 16 516 21 HOH HOH A . F 5 HOH 17 517 22 HOH HOH A . F 5 HOH 18 518 23 HOH HOH A . F 5 HOH 19 519 24 HOH HOH A . F 5 HOH 20 520 25 HOH HOH A . F 5 HOH 21 521 26 HOH HOH A . F 5 HOH 22 522 27 HOH HOH A . F 5 HOH 23 523 28 HOH HOH A . F 5 HOH 24 524 29 HOH HOH A . F 5 HOH 25 525 30 HOH HOH A . F 5 HOH 26 526 32 HOH HOH A . F 5 HOH 27 527 33 HOH HOH A . F 5 HOH 28 528 34 HOH HOH A . F 5 HOH 29 529 37 HOH HOH A . F 5 HOH 30 530 38 HOH HOH A . F 5 HOH 31 531 39 HOH HOH A . F 5 HOH 32 532 41 HOH HOH A . F 5 HOH 33 533 42 HOH HOH A . F 5 HOH 34 534 43 HOH HOH A . F 5 HOH 35 535 44 HOH HOH A . F 5 HOH 36 536 45 HOH HOH A . F 5 HOH 37 537 47 HOH HOH A . F 5 HOH 38 538 48 HOH HOH A . F 5 HOH 39 539 49 HOH HOH A . F 5 HOH 40 540 51 HOH HOH A . F 5 HOH 41 541 52 HOH HOH A . F 5 HOH 42 542 53 HOH HOH A . F 5 HOH 43 543 54 HOH HOH A . F 5 HOH 44 544 55 HOH HOH A . F 5 HOH 45 545 56 HOH HOH A . F 5 HOH 46 546 58 HOH HOH A . F 5 HOH 47 547 59 HOH HOH A . F 5 HOH 48 548 61 HOH HOH A . F 5 HOH 49 549 62 HOH HOH A . F 5 HOH 50 550 63 HOH HOH A . F 5 HOH 51 551 64 HOH HOH A . F 5 HOH 52 552 65 HOH HOH A . F 5 HOH 53 553 66 HOH HOH A . F 5 HOH 54 554 67 HOH HOH A . F 5 HOH 55 555 68 HOH HOH A . F 5 HOH 56 556 69 HOH HOH A . F 5 HOH 57 557 70 HOH HOH A . F 5 HOH 58 558 71 HOH HOH A . F 5 HOH 59 559 72 HOH HOH A . F 5 HOH 60 560 73 HOH HOH A . F 5 HOH 61 561 74 HOH HOH A . F 5 HOH 62 562 76 HOH HOH A . F 5 HOH 63 563 77 HOH HOH A . F 5 HOH 64 564 78 HOH HOH A . F 5 HOH 65 565 79 HOH HOH A . F 5 HOH 66 566 80 HOH HOH A . F 5 HOH 67 567 81 HOH HOH A . F 5 HOH 68 568 82 HOH HOH A . F 5 HOH 69 569 83 HOH HOH A . F 5 HOH 70 570 85 HOH HOH A . F 5 HOH 71 571 86 HOH HOH A . F 5 HOH 72 572 87 HOH HOH A . F 5 HOH 73 573 88 HOH HOH A . F 5 HOH 74 574 89 HOH HOH A . F 5 HOH 75 575 91 HOH HOH A . F 5 HOH 76 576 92 HOH HOH A . F 5 HOH 77 577 93 HOH HOH A . F 5 HOH 78 578 94 HOH HOH A . F 5 HOH 79 579 95 HOH HOH A . F 5 HOH 80 580 96 HOH HOH A . F 5 HOH 81 581 97 HOH HOH A . F 5 HOH 82 582 98 HOH HOH A . F 5 HOH 83 583 99 HOH HOH A . F 5 HOH 84 584 101 HOH HOH A . F 5 HOH 85 585 102 HOH HOH A . F 5 HOH 86 586 104 HOH HOH A . F 5 HOH 87 587 106 HOH HOH A . F 5 HOH 88 588 107 HOH HOH A . F 5 HOH 89 589 108 HOH HOH A . F 5 HOH 90 590 109 HOH HOH A . F 5 HOH 91 591 110 HOH HOH A . F 5 HOH 92 592 113 HOH HOH A . F 5 HOH 93 593 114 HOH HOH A . F 5 HOH 94 594 116 HOH HOH A . F 5 HOH 95 595 117 HOH HOH A . F 5 HOH 96 596 118 HOH HOH A . F 5 HOH 97 597 120 HOH HOH A . F 5 HOH 98 598 121 HOH HOH A . F 5 HOH 99 599 123 HOH HOH A . F 5 HOH 100 600 124 HOH HOH A . F 5 HOH 101 601 128 HOH HOH A . F 5 HOH 102 602 129 HOH HOH A . F 5 HOH 103 603 130 HOH HOH A . F 5 HOH 104 604 131 HOH HOH A . F 5 HOH 105 605 132 HOH HOH A . F 5 HOH 106 606 133 HOH HOH A . F 5 HOH 107 607 134 HOH HOH A . F 5 HOH 108 608 135 HOH HOH A . F 5 HOH 109 609 136 HOH HOH A . F 5 HOH 110 610 137 HOH HOH A . F 5 HOH 111 611 138 HOH HOH A . F 5 HOH 112 612 139 HOH HOH A . F 5 HOH 113 613 140 HOH HOH A . F 5 HOH 114 614 141 HOH HOH A . F 5 HOH 115 615 142 HOH HOH A . F 5 HOH 116 616 143 HOH HOH A . F 5 HOH 117 617 144 HOH HOH A . F 5 HOH 118 618 145 HOH HOH A . F 5 HOH 119 619 146 HOH HOH A . F 5 HOH 120 620 148 HOH HOH A . F 5 HOH 121 621 149 HOH HOH A . F 5 HOH 122 622 150 HOH HOH A . F 5 HOH 123 623 151 HOH HOH A . F 5 HOH 124 624 152 HOH HOH A . F 5 HOH 125 625 154 HOH HOH A . F 5 HOH 126 626 155 HOH HOH A . F 5 HOH 127 627 156 HOH HOH A . F 5 HOH 128 628 157 HOH HOH A . F 5 HOH 129 629 158 HOH HOH A . F 5 HOH 130 630 159 HOH HOH A . F 5 HOH 131 631 160 HOH HOH A . F 5 HOH 132 632 161 HOH HOH A . F 5 HOH 133 633 162 HOH HOH A . F 5 HOH 134 634 163 HOH HOH A . F 5 HOH 135 635 164 HOH HOH A . F 5 HOH 136 636 165 HOH HOH A . F 5 HOH 137 637 167 HOH HOH A . F 5 HOH 138 638 168 HOH HOH A . F 5 HOH 139 639 169 HOH HOH A . F 5 HOH 140 640 171 HOH HOH A . F 5 HOH 141 641 172 HOH HOH A . F 5 HOH 142 642 173 HOH HOH A . F 5 HOH 143 643 174 HOH HOH A . F 5 HOH 144 644 175 HOH HOH A . F 5 HOH 145 645 176 HOH HOH A . F 5 HOH 146 646 177 HOH HOH A . F 5 HOH 147 647 178 HOH HOH A . F 5 HOH 148 648 179 HOH HOH A . F 5 HOH 149 649 180 HOH HOH A . F 5 HOH 150 650 181 HOH HOH A . F 5 HOH 151 651 182 HOH HOH A . F 5 HOH 152 652 183 HOH HOH A . F 5 HOH 153 653 184 HOH HOH A . F 5 HOH 154 654 186 HOH HOH A . F 5 HOH 155 655 187 HOH HOH A . F 5 HOH 156 656 188 HOH HOH A . F 5 HOH 157 657 189 HOH HOH A . F 5 HOH 158 658 190 HOH HOH A . F 5 HOH 159 659 191 HOH HOH A . F 5 HOH 160 660 192 HOH HOH A . F 5 HOH 161 661 193 HOH HOH A . F 5 HOH 162 662 194 HOH HOH A . F 5 HOH 163 663 195 HOH HOH A . F 5 HOH 164 664 196 HOH HOH A . F 5 HOH 165 665 197 HOH HOH A . F 5 HOH 166 666 198 HOH HOH A . F 5 HOH 167 667 199 HOH HOH A . F 5 HOH 168 668 200 HOH HOH A . F 5 HOH 169 669 201 HOH HOH A . F 5 HOH 170 670 202 HOH HOH A . F 5 HOH 171 671 203 HOH HOH A . F 5 HOH 172 672 204 HOH HOH A . #