HEADER PLANT PROTEIN 04-NOV-13 4NH4 TITLE STRUCTURE OF THE BINARY COMPLEX OF A ZINGIBER OFFICINALE DOUBLE BOND TITLE 2 REDUCTASE IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZINGIBER OFFICINALE; SOURCE 3 ORGANISM_COMMON: GINGER; SOURCE 4 ORGANISM_TAXID: 94328; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODONPLUS-RP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT KEYWDS ROSSMANN FOLD, TWISTED B-BARREL, CURCUMINOID REDUCTASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.LANGLOIS D'ESTAINTOT,J.BURATTO,T.GRANIER,B.GALLOIS,M.A.WILLIS, AUTHOR 2 Y.SANG,I.J.FLORES-SANCHEZ,D.R.GANG REVDAT 2 08-NOV-23 4NH4 1 REMARK REVDAT 1 05-NOV-14 4NH4 0 JRNL AUTH J.BURATTO,B.LANGLOIS D'ESTAINTOT,T.GRANIER,B.GALLOIS, JRNL AUTH 2 M.A.WILLIS,Y.SANG,I.J.FLORES-SANCHEZ,D.R.GANG JRNL TITL STRUCTURE OF ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 43787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5640 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5259 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7668 ; 1.815 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12090 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 702 ; 7.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;37.737 ;24.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 888 ;14.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 843 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6355 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1294 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2811 ; 2.130 ; 2.475 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2810 ; 2.130 ; 2.474 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3509 ; 3.152 ; 4.153 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7440 36.0080 64.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.2100 REMARK 3 T33: 0.1352 T12: 0.0019 REMARK 3 T13: 0.1104 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 1.8868 L22: 0.9525 REMARK 3 L33: 1.1570 L12: 0.6924 REMARK 3 L13: -0.8284 L23: -1.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.2642 S12: 0.1873 S13: 0.2305 REMARK 3 S21: 0.2099 S22: 0.0118 S23: 0.1981 REMARK 3 S31: -0.1834 S32: -0.1373 S33: -0.2760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1280 36.3660 63.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.1065 REMARK 3 T33: 0.0299 T12: -0.0952 REMARK 3 T13: 0.0161 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.0386 L22: 0.4673 REMARK 3 L33: 0.9946 L12: 0.1167 REMARK 3 L13: -0.8568 L23: -0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: -0.0905 S13: 0.0166 REMARK 3 S21: 0.1846 S22: -0.1225 S23: 0.0217 REMARK 3 S31: -0.1646 S32: 0.1506 S33: -0.0819 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1290 38.6690 24.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.1708 REMARK 3 T33: 0.0890 T12: 0.0175 REMARK 3 T13: -0.0317 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.5192 L22: 1.1151 REMARK 3 L33: 1.7294 L12: 0.1881 REMARK 3 L13: 0.9805 L23: 0.2771 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.2069 S13: -0.0061 REMARK 3 S21: 0.2355 S22: 0.0820 S23: -0.1159 REMARK 3 S31: -0.0853 S32: 0.1684 S33: -0.0637 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3900 39.7880 31.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.3683 REMARK 3 T33: 0.0520 T12: 0.0918 REMARK 3 T13: -0.0132 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 1.1767 L22: 0.3126 REMARK 3 L33: 1.6337 L12: -0.1890 REMARK 3 L13: -0.9740 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.1441 S12: 0.4659 S13: 0.0945 REMARK 3 S21: 0.1212 S22: -0.0865 S23: -0.0646 REMARK 3 S31: -0.1697 S32: -0.4125 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 295 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1630 37.0130 18.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.2584 T22: 0.1377 REMARK 3 T33: 0.0557 T12: 0.0564 REMARK 3 T13: -0.0027 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.9192 L22: 1.6040 REMARK 3 L33: 2.0910 L12: 0.1112 REMARK 3 L13: 0.3118 L23: -0.3940 REMARK 3 S TENSOR REMARK 3 S11: -0.2304 S12: 0.3230 S13: 0.0178 REMARK 3 S21: 0.0930 S22: 0.1811 S23: 0.0259 REMARK 3 S31: -0.1737 S32: -0.1916 S33: 0.0494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4NH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : HORIZONTALLY SIDE DIFFRACTING REMARK 200 SILICON 111 CRYSTAL REMARK 200 OPTICS : PT COATED SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.037 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : 0.74500 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 1450, 100MM PCB, 3MM NAN3, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.85300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.20300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.85300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.20300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 HIS B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 LYS A 26 CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 SER A 73 OG REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 160 CE NZ REMARK 470 LYS A 253 CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 338 CD NE CZ NH1 NH2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 VAL B 7 CG1 CG2 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 44 CD OE1 OE2 REMARK 470 LYS B 68 CD CE NZ REMARK 470 GLU B 70 CD OE1 OE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 SER B 73 OG REMARK 470 TYR B 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 101 CD CE NZ REMARK 470 LYS B 120 CD CE NZ REMARK 470 LYS B 126 CD CE NZ REMARK 470 LYS B 159 CD CE NZ REMARK 470 LYS B 160 CE NZ REMARK 470 LYS B 182 CD CE NZ REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 PHE B 292 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 LYS B 313 CE NZ REMARK 470 LYS B 351 CD CE NZ REMARK 470 HIS B 355 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 154 -70.32 -92.17 REMARK 500 SER A 157 59.43 32.13 REMARK 500 ALA A 168 45.58 36.96 REMARK 500 THR A 203 -76.71 -112.07 REMARK 500 HIS A 353 155.05 -43.86 REMARK 500 HIS A 354 32.13 -161.54 REMARK 500 LEU B 40 37.02 -88.64 REMARK 500 SER B 73 -177.61 -61.56 REMARK 500 LYS B 120 65.84 -119.60 REMARK 500 ASP B 154 -71.64 -94.31 REMARK 500 LYS B 160 125.80 -38.02 REMARK 500 THR B 203 -84.54 -83.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MKR RELATED DB: PDB REMARK 900 APO FORM OF THE SAME PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 4NH4 A 1 358 PDB 4NH4 4NH4 1 358 DBREF 4NH4 B 1 358 PDB 4NH4 4NH4 1 358 SEQRES 1 A 358 MET ALA SER ALA GLU ASP VAL VAL VAL VAL ASN LYS GLN SEQRES 2 A 358 VAL LEU LEU LYS HIS PHE ILE PRO GLU GLY ALA PRO LYS SEQRES 3 A 358 GLU THR ASP MET GLU LEU VAL THR THR GLY THR ILE ARG SEQRES 4 A 358 LEU ARG VAL PRO GLU GLY SER ASN ALA VAL LEU LEU LYS SEQRES 5 A 358 ASN LEU TYR LEU SER CYS ASP PRO TYR MET ARG MET ARG SEQRES 6 A 358 MET THR LYS HIS GLU GLU ALA SER TYR VAL ASP ASP PHE SEQRES 7 A 358 VAL PRO GLY ALA PRO ILE THR GLY PHE GLY VAL GLY LYS SEQRES 8 A 358 VAL VAL ASP SER SER HIS PRO ASP PHE LYS THR GLY ASP SEQRES 9 A 358 TYR VAL TRP GLY LEU ILE GLY TRP GLU GLU TYR SER LEU SEQRES 10 A 358 ILE THR LYS PRO GLN GLY LEU PHE LYS ILE HIS HIS THR SEQRES 11 A 358 GLU ILE PRO LEU SER TYR TYR THR GLY ILE LEU GLY MET SEQRES 12 A 358 VAL GLY LEU THR ALA TYR VAL GLY PHE TYR ASP ILE CYS SEQRES 13 A 358 SER PRO LYS LYS GLY GLU ARG VAL PHE VAL SER ALA ALA SEQRES 14 A 358 ALA GLY ALA VAL GLY GLN ILE VAL GLY GLN PHE ALA LYS SEQRES 15 A 358 GLN PHE GLY CYS TYR VAL VAL GLY SER ALA GLY SER ASP SEQRES 16 A 358 GLU LYS VAL ASN LEU LEU LYS THR LYS PHE GLY PHE ASP SEQRES 17 A 358 GLU ALA PHE ASN TYR LYS LYS GLU PRO ASP LEU THR LYS SEQRES 18 A 358 ALA LEU LYS ARG TYR PHE PRO GLU GLY ILE ASP ILE TYR SEQRES 19 A 358 PHE GLU ASN VAL GLY GLY PRO MET LEU GLU ALA VAL LEU SEQRES 20 A 358 HIS ASN MET ARG ILE LYS GLY ARG ILE ALA ALA CYS GLY SEQRES 21 A 358 MET ILE SER GLN TYR ASN LEU GLU LYS PRO GLU GLY VAL SEQRES 22 A 358 HIS ASN LEU PHE LEU ILE VAL GLY LYS ARG ILE ARG LEU SEQRES 23 A 358 GLU GLY PHE LEU VAL PHE ASP HIS TYR GLY SER TYR PRO SEQRES 24 A 358 GLU PHE GLU GLU LYS VAL VAL GLN LEU ILE LYS GLU GLU SEQRES 25 A 358 LYS ILE LYS TYR LEU GLU ASP ILE VAL GLU GLY LEU GLU SEQRES 26 A 358 ASN ALA PRO ALA ALA LEU ILE GLY LEU PHE GLU GLY ARG SEQRES 27 A 358 ASN VAL GLY LYS GLN VAL VAL VAL VAL SER ARG GLU LYS SEQRES 28 A 358 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 358 MET ALA SER ALA GLU ASP VAL VAL VAL VAL ASN LYS GLN SEQRES 2 B 358 VAL LEU LEU LYS HIS PHE ILE PRO GLU GLY ALA PRO LYS SEQRES 3 B 358 GLU THR ASP MET GLU LEU VAL THR THR GLY THR ILE ARG SEQRES 4 B 358 LEU ARG VAL PRO GLU GLY SER ASN ALA VAL LEU LEU LYS SEQRES 5 B 358 ASN LEU TYR LEU SER CYS ASP PRO TYR MET ARG MET ARG SEQRES 6 B 358 MET THR LYS HIS GLU GLU ALA SER TYR VAL ASP ASP PHE SEQRES 7 B 358 VAL PRO GLY ALA PRO ILE THR GLY PHE GLY VAL GLY LYS SEQRES 8 B 358 VAL VAL ASP SER SER HIS PRO ASP PHE LYS THR GLY ASP SEQRES 9 B 358 TYR VAL TRP GLY LEU ILE GLY TRP GLU GLU TYR SER LEU SEQRES 10 B 358 ILE THR LYS PRO GLN GLY LEU PHE LYS ILE HIS HIS THR SEQRES 11 B 358 GLU ILE PRO LEU SER TYR TYR THR GLY ILE LEU GLY MET SEQRES 12 B 358 VAL GLY LEU THR ALA TYR VAL GLY PHE TYR ASP ILE CYS SEQRES 13 B 358 SER PRO LYS LYS GLY GLU ARG VAL PHE VAL SER ALA ALA SEQRES 14 B 358 ALA GLY ALA VAL GLY GLN ILE VAL GLY GLN PHE ALA LYS SEQRES 15 B 358 GLN PHE GLY CYS TYR VAL VAL GLY SER ALA GLY SER ASP SEQRES 16 B 358 GLU LYS VAL ASN LEU LEU LYS THR LYS PHE GLY PHE ASP SEQRES 17 B 358 GLU ALA PHE ASN TYR LYS LYS GLU PRO ASP LEU THR LYS SEQRES 18 B 358 ALA LEU LYS ARG TYR PHE PRO GLU GLY ILE ASP ILE TYR SEQRES 19 B 358 PHE GLU ASN VAL GLY GLY PRO MET LEU GLU ALA VAL LEU SEQRES 20 B 358 HIS ASN MET ARG ILE LYS GLY ARG ILE ALA ALA CYS GLY SEQRES 21 B 358 MET ILE SER GLN TYR ASN LEU GLU LYS PRO GLU GLY VAL SEQRES 22 B 358 HIS ASN LEU PHE LEU ILE VAL GLY LYS ARG ILE ARG LEU SEQRES 23 B 358 GLU GLY PHE LEU VAL PHE ASP HIS TYR GLY SER TYR PRO SEQRES 24 B 358 GLU PHE GLU GLU LYS VAL VAL GLN LEU ILE LYS GLU GLU SEQRES 25 B 358 LYS ILE LYS TYR LEU GLU ASP ILE VAL GLU GLY LEU GLU SEQRES 26 B 358 ASN ALA PRO ALA ALA LEU ILE GLY LEU PHE GLU GLY ARG SEQRES 27 B 358 ASN VAL GLY LYS GLN VAL VAL VAL VAL SER ARG GLU LYS SEQRES 28 B 358 GLY HIS HIS HIS HIS HIS HIS HET NAP A 400 48 HET NAP B 400 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *337(H2 O) HELIX 1 1 LYS A 26 THR A 28 5 3 HELIX 2 2 ASP A 59 THR A 67 5 9 HELIX 3 3 LYS A 120 LEU A 124 5 5 HELIX 4 4 PRO A 133 GLY A 139 5 7 HELIX 5 5 GLY A 142 ASP A 154 1 13 HELIX 6 6 GLY A 171 GLY A 185 1 15 HELIX 7 7 SER A 194 THR A 203 1 10 HELIX 8 8 LYS A 214 GLU A 216 5 3 HELIX 9 9 ASP A 218 PHE A 227 1 10 HELIX 10 10 GLY A 240 ASN A 249 1 10 HELIX 11 11 MET A 261 TYR A 265 5 5 HELIX 12 12 PHE A 277 LYS A 282 1 6 HELIX 13 13 LEU A 290 GLY A 296 5 7 HELIX 14 14 SER A 297 GLU A 311 1 15 HELIX 15 15 ASN A 326 PHE A 335 1 10 HELIX 16 16 LYS B 26 THR B 28 5 3 HELIX 17 17 ASP B 59 THR B 67 5 9 HELIX 18 18 LYS B 120 LEU B 124 5 5 HELIX 19 19 PRO B 133 GLY B 139 5 7 HELIX 20 20 GLY B 142 ASP B 154 1 13 HELIX 21 21 GLY B 171 PHE B 184 1 14 HELIX 22 22 SER B 194 THR B 203 1 10 HELIX 23 23 LYS B 214 GLU B 216 5 3 HELIX 24 24 ASP B 218 PHE B 227 1 10 HELIX 25 25 GLY B 240 ASN B 249 1 10 HELIX 26 26 MET B 261 TYR B 265 5 5 HELIX 27 27 PHE B 277 LYS B 282 1 6 HELIX 28 28 LEU B 290 GLY B 296 5 7 HELIX 29 29 SER B 297 GLU B 311 1 15 HELIX 30 30 ASN B 326 PHE B 335 1 10 SHEET 1 A 2 VAL A 8 VAL A 10 0 SHEET 2 A 2 THR A 37 ARG A 39 -1 O ILE A 38 N VAL A 9 SHEET 1 B 2 GLN A 13 LEU A 16 0 SHEET 2 B 2 MET A 30 VAL A 33 -1 O VAL A 33 N GLN A 13 SHEET 1 C 5 TYR A 115 ILE A 118 0 SHEET 2 C 5 VAL A 49 SER A 57 -1 N VAL A 49 O ILE A 118 SHEET 3 C 5 THR A 85 SER A 95 -1 O VAL A 89 N LEU A 54 SHEET 4 C 5 TYR A 105 GLY A 111 -1 O ILE A 110 N GLY A 86 SHEET 5 C 5 PHE A 125 LYS A 126 -1 O PHE A 125 N TRP A 107 SHEET 1 D 4 TYR A 115 ILE A 118 0 SHEET 2 D 4 VAL A 49 SER A 57 -1 N VAL A 49 O ILE A 118 SHEET 3 D 4 LYS A 342 VAL A 346 -1 O VAL A 345 N LEU A 56 SHEET 4 D 4 GLU A 318 GLU A 322 1 N ASP A 319 O VAL A 344 SHEET 1 E12 GLU A 209 ASN A 212 0 SHEET 2 E12 TYR A 187 ALA A 192 1 N ALA A 192 O PHE A 211 SHEET 3 E12 ARG A 163 VAL A 166 1 N VAL A 164 O TYR A 187 SHEET 4 E12 ILE A 231 GLU A 236 1 O ILE A 233 N PHE A 165 SHEET 5 E12 MET A 250 ALA A 258 1 O ARG A 251 N ILE A 231 SHEET 6 E12 ARG A 285 GLY A 288 1 O ARG A 285 N ILE A 256 SHEET 7 E12 ARG B 285 GLY B 288 -1 O LEU B 286 N LEU A 286 SHEET 8 E12 MET B 250 ALA B 258 1 N ILE B 256 O GLU B 287 SHEET 9 E12 ILE B 231 GLU B 236 1 N ILE B 231 O ARG B 251 SHEET 10 E12 ARG B 163 VAL B 166 1 N PHE B 165 O PHE B 235 SHEET 11 E12 TYR B 187 ALA B 192 1 O TYR B 187 N VAL B 164 SHEET 12 E12 GLU B 209 ASN B 212 1 O PHE B 211 N ALA B 192 SHEET 1 F 2 VAL B 8 VAL B 10 0 SHEET 2 F 2 THR B 37 ARG B 39 -1 O ILE B 38 N VAL B 9 SHEET 1 G 2 GLN B 13 LEU B 16 0 SHEET 2 G 2 MET B 30 VAL B 33 -1 O VAL B 33 N GLN B 13 SHEET 1 H 5 TYR B 115 ILE B 118 0 SHEET 2 H 5 VAL B 49 SER B 57 -1 N VAL B 49 O ILE B 118 SHEET 3 H 5 THR B 85 SER B 95 -1 O VAL B 93 N LEU B 50 SHEET 4 H 5 TYR B 105 GLY B 111 -1 O ILE B 110 N GLY B 86 SHEET 5 H 5 PHE B 125 LYS B 126 -1 O PHE B 125 N TRP B 107 SHEET 1 I 4 TYR B 115 ILE B 118 0 SHEET 2 I 4 VAL B 49 SER B 57 -1 N VAL B 49 O ILE B 118 SHEET 3 I 4 LYS B 342 VAL B 346 -1 O VAL B 345 N LEU B 56 SHEET 4 I 4 GLU B 318 GLU B 322 1 N ASP B 319 O VAL B 344 SITE 1 AC1 34 PRO A 60 THR A 147 GLY A 171 ALA A 172 SITE 2 AC1 34 VAL A 173 ALA A 192 GLY A 193 LYS A 197 SITE 3 AC1 34 TYR A 213 ASN A 237 VAL A 238 CYS A 259 SITE 4 AC1 34 GLY A 260 MET A 261 ILE A 262 SER A 263 SITE 5 AC1 34 TYR A 265 PHE A 289 LEU A 290 VAL A 291 SITE 6 AC1 34 LEU A 334 PHE A 335 GLY A 337 ASN A 339 SITE 7 AC1 34 HOH A 501 HOH A 506 HOH A 509 HOH A 517 SITE 8 AC1 34 HOH A 518 HOH A 539 HOH A 555 HOH A 593 SITE 9 AC1 34 HOH A 595 HOH A 611 SITE 1 AC2 29 PRO B 60 MET B 143 THR B 147 GLY B 171 SITE 2 AC2 29 ALA B 172 VAL B 173 ALA B 192 GLY B 193 SITE 3 AC2 29 LYS B 197 TYR B 213 ASN B 237 CYS B 259 SITE 4 AC2 29 GLY B 260 ILE B 262 SER B 263 TYR B 265 SITE 5 AC2 29 PHE B 289 LEU B 290 VAL B 291 LEU B 334 SITE 6 AC2 29 GLY B 337 ASN B 339 HOH B 501 HOH B 516 SITE 7 AC2 29 HOH B 518 HOH B 519 HOH B 529 HOH B 588 SITE 8 AC2 29 HOH B 589 CRYST1 60.660 78.406 155.706 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006422 0.00000