HEADER HYDROLASE 05-NOV-13 4NHO TITLE STRUCTURE OF THE SPLICEOSOMAL DEAD-BOX PROTEIN PRP28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECA DOMAINS (UNP RESIDUES 338-820); COMPND 5 SYNONYM: 100 KDA U5 SNRNP-SPECIFIC PROTEIN, DEAD BOX PROTEIN 23, COMPND 6 PRP28 HOMOLOG, U5-100KD; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-3 KEYWDS DEAD-BOX, HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOEHLMANN,P.NEUMANN,R.FICNER REVDAT 6 27-NOV-24 4NHO 1 REMARK REVDAT 5 06-DEC-23 4NHO 1 REMARK REVDAT 4 20-SEP-23 4NHO 1 REMARK SEQADV REVDAT 3 04-SEP-19 4NHO 1 REMARK LINK REVDAT 2 24-SEP-14 4NHO 1 JRNL REVDAT 1 18-JUN-14 4NHO 0 JRNL AUTH S.MOHLMANN,R.MATHEW,P.NEUMANN,A.SCHMITT,R.LUHRMANN,R.FICNER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE HUMAN SPLICEOSOMAL JRNL TITL 2 DEAD-BOX HELICASE PRP28. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1622 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24914973 JRNL DOI 10.1107/S1399004714006439 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8283 - 4.9248 1.00 2878 133 0.1941 0.1983 REMARK 3 2 4.9248 - 3.9121 1.00 2758 157 0.1554 0.1749 REMARK 3 3 3.9121 - 3.4185 1.00 2726 165 0.1678 0.1700 REMARK 3 4 3.4185 - 3.1063 1.00 2726 125 0.1841 0.2165 REMARK 3 5 3.1063 - 2.8839 1.00 2717 148 0.2020 0.2583 REMARK 3 6 2.8839 - 2.7140 1.00 2699 149 0.1945 0.2282 REMARK 3 7 2.7140 - 2.5782 1.00 2715 131 0.1919 0.2388 REMARK 3 8 2.5782 - 2.4660 1.00 2672 146 0.1791 0.2307 REMARK 3 9 2.4660 - 2.3711 1.00 2703 144 0.1793 0.2115 REMARK 3 10 2.3711 - 2.2893 1.00 2704 140 0.1855 0.2487 REMARK 3 11 2.2893 - 2.2178 1.00 2645 144 0.2084 0.2171 REMARK 3 12 2.2178 - 2.1544 1.00 2659 159 0.2294 0.3025 REMARK 3 13 2.1544 - 2.0977 1.00 2689 143 0.2570 0.2758 REMARK 3 14 2.0977 - 2.0465 1.00 2690 152 0.2966 0.3150 REMARK 3 15 2.0465 - 2.0000 1.00 2699 123 0.3380 0.3970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 74.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 24.54740 REMARK 3 B22 (A**2) : -11.21290 REMARK 3 B33 (A**2) : -13.33450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3679 REMARK 3 ANGLE : 1.276 4983 REMARK 3 CHIRALITY : 0.086 551 REMARK 3 PLANARITY : 0.006 643 REMARK 3 DIHEDRAL : 18.918 1418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 352:366) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1744 39.5289 19.0778 REMARK 3 T TENSOR REMARK 3 T11: 0.6180 T22: 0.4173 REMARK 3 T33: 0.5687 T12: -0.0724 REMARK 3 T13: -0.0885 T23: -0.1313 REMARK 3 L TENSOR REMARK 3 L11: 0.2456 L22: 0.7820 REMARK 3 L33: 0.2354 L12: -0.1138 REMARK 3 L13: -0.1724 L23: -0.2096 REMARK 3 S TENSOR REMARK 3 S11: -0.2215 S12: 0.3160 S13: 0.1438 REMARK 3 S21: -0.1098 S22: 0.0607 S23: 0.5902 REMARK 3 S31: 0.3638 S32: -0.1980 S33: 0.1938 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 367:632) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1912 61.4240 18.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.5344 T22: 0.2530 REMARK 3 T33: 0.2494 T12: 0.0842 REMARK 3 T13: 0.0828 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.4375 L22: 1.5659 REMARK 3 L33: 1.1309 L12: 0.3288 REMARK 3 L13: 0.4446 L23: 0.5568 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.1626 S13: 0.0327 REMARK 3 S21: -0.6904 S22: -0.0928 S23: -0.0914 REMARK 3 S31: -0.0858 S32: -0.0421 S33: 0.0867 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 633:672 OR RESID 733:806) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9816 46.3370 48.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.5080 T22: 0.3505 REMARK 3 T33: 0.3372 T12: -0.0824 REMARK 3 T13: 0.0256 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5380 L22: 3.0401 REMARK 3 L33: 1.1499 L12: -0.2946 REMARK 3 L13: 0.0040 L23: 0.4022 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.1205 S13: 0.0143 REMARK 3 S21: 0.4607 S22: -0.2502 S23: -0.1462 REMARK 3 S31: 0.1570 S32: -0.1357 S33: 0.1946 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 673:732) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2515 40.8420 51.1186 REMARK 3 T TENSOR REMARK 3 T11: 0.8378 T22: 0.8489 REMARK 3 T33: 0.7783 T12: -0.2900 REMARK 3 T13: 0.3593 T23: -0.3319 REMARK 3 L TENSOR REMARK 3 L11: 0.2099 L22: 1.6167 REMARK 3 L33: 1.7613 L12: 0.0008 REMARK 3 L13: -0.1453 L23: 1.5208 REMARK 3 S TENSOR REMARK 3 S11: -0.1372 S12: -0.0323 S13: 0.0986 REMARK 3 S21: 0.3536 S22: -0.7482 S23: 0.6669 REMARK 3 S31: 0.8510 S32: -1.0322 S33: 0.7217 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.1; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.001212; 1.008580 REMARK 200 MONOCHROMATOR : GRAPHITE; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLOMON, SHARP REMARK 200 STARTING MODEL: PDB ENTRY 2DB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 20 % (V/V) REMARK 280 GLYCEROL, 0.1 M CAPS, MIXING 1 UL OF PROTEIN WITH 1 UL OF REMARK 280 RESERVOIR SOLUTION, PH 9.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.61000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.71500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.38500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.61000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.71500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.38500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1199 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 333 REMARK 465 PRO A 334 REMARK 465 LEU A 335 REMARK 465 GLY A 336 REMARK 465 SER A 337 REMARK 465 ALA A 338 REMARK 465 ARG A 339 REMARK 465 LEU A 340 REMARK 465 ARG A 341 REMARK 465 LYS A 342 REMARK 465 LEU A 343 REMARK 465 ARG A 344 REMARK 465 LYS A 345 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 ALA A 348 REMARK 465 LYS A 349 REMARK 465 GLN A 350 REMARK 465 ARG A 351 REMARK 465 HIS A 695 REMARK 465 GLY A 696 REMARK 465 GLY A 697 REMARK 465 LYS A 698 REMARK 465 GLY A 699 REMARK 465 GLN A 700 REMARK 465 GLU A 701 REMARK 465 GLN A 702 REMARK 465 ALA A 724 REMARK 465 GLY A 725 REMARK 465 ARG A 726 REMARK 465 GLY A 727 REMARK 465 THR A 807 REMARK 465 ILE A 808 REMARK 465 LEU A 809 REMARK 465 THR A 810 REMARK 465 LYS A 811 REMARK 465 LYS A 812 REMARK 465 ARG A 813 REMARK 465 ARG A 814 REMARK 465 GLU A 815 REMARK 465 GLU A 816 REMARK 465 THR A 817 REMARK 465 ILE A 818 REMARK 465 PHE A 819 REMARK 465 ALA A 820 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 746 O HOH A 1174 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 543 CB CYS A 543 SG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 411 89.79 -64.58 REMARK 500 LEU A 540 42.37 -109.61 REMARK 500 SER A 594 8.85 -65.06 REMARK 500 SER A 594 0.48 -57.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 909 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 543 SG REMARK 620 2 MET A 570 SD 96.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 909 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 543 SG REMARK 620 2 MET A 570 SD 93.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 909 DBREF 4NHO A 338 820 UNP Q9BUQ8 DDX23_HUMAN 338 820 SEQADV 4NHO GLY A 333 UNP Q9BUQ8 EXPRESSION TAG SEQADV 4NHO PRO A 334 UNP Q9BUQ8 EXPRESSION TAG SEQADV 4NHO LEU A 335 UNP Q9BUQ8 EXPRESSION TAG SEQADV 4NHO GLY A 336 UNP Q9BUQ8 EXPRESSION TAG SEQADV 4NHO SER A 337 UNP Q9BUQ8 EXPRESSION TAG SEQRES 1 A 488 GLY PRO LEU GLY SER ALA ARG LEU ARG LYS LEU ARG LYS SEQRES 2 A 488 LYS GLU ALA LYS GLN ARG TRP ASP ASP ARG HIS TRP SER SEQRES 3 A 488 GLN LYS LYS LEU ASP GLU MET THR ASP ARG ASP TRP ARG SEQRES 4 A 488 ILE PHE ARG GLU ASP TYR SER ILE THR THR LYS GLY GLY SEQRES 5 A 488 LYS ILE PRO ASN PRO ILE ARG SER TRP LYS ASP SER SER SEQRES 6 A 488 LEU PRO PRO HIS ILE LEU GLU VAL ILE ASP LYS CYS GLY SEQRES 7 A 488 TYR LYS GLU PRO THR PRO ILE GLN ARG GLN ALA ILE PRO SEQRES 8 A 488 ILE GLY LEU GLN ASN ARG ASP ILE ILE GLY VAL ALA GLU SEQRES 9 A 488 THR GLY SER GLY LYS THR ALA ALA PHE LEU ILE PRO LEU SEQRES 10 A 488 LEU VAL TRP ILE THR THR LEU PRO LYS ILE ASP ARG ILE SEQRES 11 A 488 GLU GLU SER ASP GLN GLY PRO TYR ALA ILE ILE LEU ALA SEQRES 12 A 488 PRO THR ARG GLU LEU ALA GLN GLN ILE GLU GLU GLU THR SEQRES 13 A 488 ILE LYS PHE GLY LYS PRO LEU GLY ILE ARG THR VAL ALA SEQRES 14 A 488 VAL ILE GLY GLY ILE SER ARG GLU ASP GLN GLY PHE ARG SEQRES 15 A 488 LEU ARG MET GLY CSO GLU ILE VAL ILE ALA THR PRO GLY SEQRES 16 A 488 ARG LEU ILE ASP VAL LEU GLU ASN ARG TYR LEU VAL LEU SEQRES 17 A 488 SER ARG CYS THR TYR VAL VAL LEU ASP GLU ALA ASP ARG SEQRES 18 A 488 MET ILE ASP MET GLY PHE GLU PRO ASP VAL GLN LYS ILE SEQRES 19 A 488 LEU GLU HIS MET PRO VAL SER ASN GLN LYS PRO ASP THR SEQRES 20 A 488 ASP GLU ALA GLU ASP PRO GLU LYS MET LEU ALA ASN PHE SEQRES 21 A 488 GLU SER GLY LYS HIS LYS TYR ARG GLN THR VAL MET PHE SEQRES 22 A 488 THR ALA THR MET PRO PRO ALA VAL GLU ARG LEU ALA ARG SEQRES 23 A 488 SER TYR LEU ARG ARG PRO ALA VAL VAL TYR ILE GLY SER SEQRES 24 A 488 ALA GLY LYS PRO HIS GLU ARG VAL GLU GLN LYS VAL PHE SEQRES 25 A 488 LEU MET SER GLU SER GLU LYS ARG LYS LYS LEU LEU ALA SEQRES 26 A 488 ILE LEU GLU GLN GLY PHE ASP PRO PRO ILE ILE ILE PHE SEQRES 27 A 488 VAL ASN GLN LYS LYS GLY CYS ASP VAL LEU ALA LYS SER SEQRES 28 A 488 LEU GLU LYS MET GLY TYR ASN ALA CYS THR LEU HIS GLY SEQRES 29 A 488 GLY LYS GLY GLN GLU GLN ARG GLU PHE ALA LEU SER ASN SEQRES 30 A 488 LEU LYS ALA GLY ALA LYS ASP ILE LEU VAL ALA THR ASP SEQRES 31 A 488 VAL ALA GLY ARG GLY ILE ASP ILE GLN ASP VAL SER MET SEQRES 32 A 488 VAL VAL ASN TYR ASP MET ALA LYS ASN ILE GLU ASP TYR SEQRES 33 A 488 ILE HIS ARG ILE GLY ARG THR GLY ARG ALA GLY LYS SER SEQRES 34 A 488 GLY VAL ALA ILE THR PHE LEU THR LYS GLU ASP SER ALA SEQRES 35 A 488 VAL PHE TYR GLU LEU LYS GLN ALA ILE LEU GLU SER PRO SEQRES 36 A 488 VAL SER SER CSO PRO PRO GLU LEU ALA ASN HIS PRO ASP SEQRES 37 A 488 ALA GLN HIS LYS PRO GLY THR ILE LEU THR LYS LYS ARG SEQRES 38 A 488 ARG GLU GLU THR ILE PHE ALA MODRES 4NHO CSO A 519 CYS S-HYDROXYCYSTEINE MODRES 4NHO CSO A 791 CYS S-HYDROXYCYSTEINE HET CSO A 519 7 HET CSO A 791 7 HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET GOL A 906 6 HET GOL A 907 6 HET CXS A 908 14 HET HG A 909 2 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM HG MERCURY (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 CXS C9 H19 N O3 S FORMUL 10 HG HG 2+ FORMUL 11 HOH *220(H2 O) HELIX 1 1 HIS A 356 LYS A 360 5 5 HELIX 2 2 LYS A 361 MET A 365 5 5 HELIX 3 3 THR A 366 SER A 378 1 13 HELIX 4 4 PRO A 399 GLY A 410 1 12 HELIX 5 5 THR A 415 LEU A 426 1 12 HELIX 6 6 GLY A 440 LEU A 456 1 17 HELIX 7 7 PRO A 457 ILE A 462 1 6 HELIX 8 8 THR A 477 LYS A 493 1 17 HELIX 9 9 PRO A 494 GLY A 496 5 3 HELIX 10 10 SER A 507 MET A 517 1 11 HELIX 11 11 THR A 525 ASN A 535 1 11 HELIX 12 12 GLU A 550 MET A 557 1 8 HELIX 13 13 PHE A 559 GLU A 568 1 10 HELIX 14 14 HIS A 569 MET A 570 5 2 HELIX 15 15 PRO A 571 GLN A 575 5 5 HELIX 16 16 THR A 579 GLU A 583 5 5 HELIX 17 17 ASP A 584 SER A 594 1 11 HELIX 18 18 GLY A 595 LYS A 598 5 4 HELIX 19 19 PRO A 610 LEU A 621 1 12 HELIX 20 20 LYS A 634 VAL A 639 1 6 HELIX 21 21 SER A 647 SER A 649 5 3 HELIX 22 22 GLU A 650 GLN A 661 1 12 HELIX 23 23 GLN A 673 MET A 687 1 15 HELIX 24 24 GLU A 704 GLY A 713 1 10 HELIX 25 25 ASN A 744 GLY A 753 1 10 HELIX 26 26 ARG A 754 GLY A 756 5 3 HELIX 27 27 THR A 769 ALA A 774 5 6 HELIX 28 28 VAL A 775 GLU A 785 1 11 HELIX 29 29 PRO A 792 ASN A 797 1 6 HELIX 30 30 HIS A 798 GLN A 802 5 5 SHEET 1 A 9 THR A 499 VAL A 502 0 SHEET 2 A 9 ILE A 521 ALA A 524 1 O ILE A 523 N VAL A 502 SHEET 3 A 9 ALA A 471 LEU A 474 1 N ILE A 473 O VAL A 522 SHEET 4 A 9 TYR A 545 LEU A 548 1 O VAL A 547 N LEU A 474 SHEET 5 A 9 GLN A 601 THR A 606 1 O PHE A 605 N LEU A 548 SHEET 6 A 9 ILE A 431 VAL A 434 1 N GLY A 433 O MET A 604 SHEET 7 A 9 ALA A 625 ILE A 629 1 O VAL A 627 N VAL A 434 SHEET 8 A 9 ILE A 379 LYS A 382 -1 N THR A 380 O TYR A 628 SHEET 9 A 9 GLY A 759 LYS A 760 1 O GLY A 759 N ILE A 379 SHEET 1 B 6 GLU A 640 LEU A 645 0 SHEET 2 B 6 VAL A 763 LEU A 768 1 O ALA A 764 N GLU A 640 SHEET 3 B 6 MET A 735 ASN A 738 1 N ASN A 738 O ILE A 765 SHEET 4 B 6 ILE A 667 PHE A 670 1 N PHE A 670 O VAL A 737 SHEET 5 B 6 ILE A 717 ALA A 720 1 O LEU A 718 N ILE A 669 SHEET 6 B 6 ALA A 691 THR A 693 1 N CYS A 692 O VAL A 719 LINK C GLY A 518 N CSO A 519 1555 1555 1.33 LINK C CSO A 519 N GLU A 520 1555 1555 1.33 LINK C SER A 790 N CSO A 791 1555 1555 1.33 LINK C CSO A 791 N PRO A 792 1555 1555 1.34 LINK SG CYS A 543 HG B HG A 909 1555 1555 2.47 LINK SG CYS A 543 HG A HG A 909 1555 1555 2.57 LINK SD MET A 570 HG B HG A 909 1555 1555 3.10 LINK SD MET A 570 HG A HG A 909 1555 1555 3.14 CISPEP 1 PRO A 665 PRO A 666 0 3.61 SITE 1 AC1 7 THR A 437 GLY A 438 SER A 439 GLY A 440 SITE 2 AC1 7 LYS A 441 THR A 442 HOH A1025 SITE 1 AC2 7 GLY A 504 GLY A 505 ARG A 508 THR A 525 SITE 2 AC2 7 GLY A 527 ARG A 528 HOH A1033 SITE 1 AC3 4 PRO A 457 LYS A 458 HOH A1110 HOH A1158 SITE 1 AC4 4 GLY A 384 LYS A 385 LYS A 760 HOH A1157 SITE 1 AC5 2 LYS A 382 HOH A1209 SITE 1 AC6 9 GLN A 564 LEU A 567 GLU A 568 ARG A 615 SITE 2 AC6 9 LEU A 616 SER A 619 TYR A 620 HOH A1161 SITE 3 AC6 9 HOH A1197 SITE 1 AC7 2 GLN A 781 GLU A 785 SITE 1 AC8 8 HIS A 356 ASP A 376 TYR A 377 ASN A 672 SITE 2 AC8 8 GLN A 673 LYS A 674 VAL A 723 ASP A 747 SITE 1 AC9 6 ILE A 472 LEU A 540 CYS A 543 TYR A 545 SITE 2 AC9 6 VAL A 546 MET A 570 CRYST1 125.430 136.770 73.220 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013657 0.00000