HEADER TRANSFERASE 12-NOV-13 4NKB TITLE CRYSTAL STRUCTURE OF THE CRYPTIC POLO BOX (CPB)OF ZYG-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SERINE/THREONINE-PROTEIN KINASE ZYG-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 338-564; COMPND 5 SYNONYM: ZYGOTE DEFECTIVE PROTEIN 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: C. ELEGANS ZYG-1 (RESIDUES 338-564), F59E12.2, ZYG-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CRYPTIC POLO BOX, CENTRIOLE BIOGENESIS, CENTROSOMES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SHIMANOVSKAYA,G.DONG REVDAT 2 28-FEB-24 4NKB 1 REMARK SEQADV REVDAT 1 27-AUG-14 4NKB 0 JRNL AUTH E.SHIMANOVSKAYA,V.VISCARDI,J.LESIGANG,M.M.LETTMAN,R.QIAO, JRNL AUTH 2 D.I.SVERGUN,A.ROUND,K.OEGEMA,G.DONG JRNL TITL STRUCTURE OF THE C. ELEGANS ZYG-1 CRYPTIC POLO BOX SUGGESTS JRNL TITL 2 A CONSERVED MECHANISM FOR CENTRIOLAR DOCKING OF PLK4 JRNL TITL 3 KINASES. JRNL REF STRUCTURE V. 22 1090 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24980795 JRNL DOI 10.1016/J.STR.2014.05.009 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 47167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9584 - 6.5951 0.97 1806 147 0.2366 0.2195 REMARK 3 2 6.5951 - 5.2507 0.98 1833 142 0.2584 0.2594 REMARK 3 3 5.2507 - 4.5917 0.99 1848 141 0.1943 0.2278 REMARK 3 4 4.5917 - 4.1740 0.99 1817 135 0.1924 0.2520 REMARK 3 5 4.1740 - 3.8760 0.97 1857 126 0.2196 0.2830 REMARK 3 6 3.8760 - 3.6482 0.98 1811 141 0.2198 0.2267 REMARK 3 7 3.6482 - 3.4660 0.98 1858 141 0.2272 0.2531 REMARK 3 8 3.4660 - 3.3155 0.98 1820 135 0.2256 0.2579 REMARK 3 9 3.3155 - 3.1881 0.99 1874 150 0.2371 0.2704 REMARK 3 10 3.1881 - 3.0783 0.96 1798 127 0.2595 0.3163 REMARK 3 11 3.0783 - 2.9822 0.97 1780 136 0.2555 0.2617 REMARK 3 12 2.9822 - 2.8971 0.99 1860 159 0.2645 0.3438 REMARK 3 13 2.8971 - 2.8209 0.97 1804 128 0.2625 0.2814 REMARK 3 14 2.8209 - 2.7522 1.00 1895 126 0.2713 0.3084 REMARK 3 15 2.7522 - 2.6897 0.97 1766 166 0.2782 0.3314 REMARK 3 16 2.6897 - 2.6325 1.00 1861 145 0.2773 0.3311 REMARK 3 17 2.6325 - 2.5799 0.96 1766 135 0.2918 0.3436 REMARK 3 18 2.5799 - 2.5313 0.95 1794 132 0.2997 0.3415 REMARK 3 19 2.5313 - 2.4861 0.98 1816 147 0.3030 0.3819 REMARK 3 20 2.4861 - 2.4440 0.97 1797 137 0.3025 0.3409 REMARK 3 21 2.4440 - 2.4046 0.99 1849 152 0.3140 0.3382 REMARK 3 22 2.4046 - 2.3677 0.96 1806 131 0.3238 0.3570 REMARK 3 23 2.3677 - 2.3329 0.99 1866 143 0.3524 0.4257 REMARK 3 24 2.3329 - 2.3000 0.98 1842 121 0.3664 0.4415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3315 REMARK 3 ANGLE : 0.876 4454 REMARK 3 CHIRALITY : 0.059 488 REMARK 3 PLANARITY : 0.005 583 REMARK 3 DIHEDRAL : 12.987 1285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR REMARK 200 OPTICS : CHANNEL-CUT CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRI-SODIUM CITRATE (PH 5.6), REMARK 280 15% (W/V) PEG 4,000, 200 MM (NH4)2SO4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.33004 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.36900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.33004 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.36900 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.71304 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.36900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 53.38300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 48.33004 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 87.36900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 MET A 337 REMARK 465 GLY A 338 REMARK 465 THR A 339 REMARK 465 VAL A 340 REMARK 465 PRO A 341 REMARK 465 PRO A 342 REMARK 465 SER A 343 REMARK 465 ARG A 344 REMARK 465 GLU A 345 REMARK 465 ASP A 346 REMARK 465 ARG A 347 REMARK 465 ASN A 348 REMARK 465 ARG A 349 REMARK 465 SER A 350 REMARK 465 ILE A 510 REMARK 465 ASP A 511 REMARK 465 GLY A 512 REMARK 465 ILE A 513 REMARK 465 ALA A 514 REMARK 465 THR A 515 REMARK 465 GLY A 548 REMARK 465 MET A 549 REMARK 465 VAL A 550 REMARK 465 VAL A 563 REMARK 465 GLY A 564 REMARK 465 GLY B 335 REMARK 465 SER B 336 REMARK 465 MET B 337 REMARK 465 GLY B 338 REMARK 465 THR B 339 REMARK 465 VAL B 340 REMARK 465 PRO B 341 REMARK 465 PRO B 342 REMARK 465 SER B 343 REMARK 465 ARG B 344 REMARK 465 GLU B 345 REMARK 465 ASP B 346 REMARK 465 ARG B 347 REMARK 465 ASN B 348 REMARK 465 ARG B 349 REMARK 465 SER B 350 REMARK 465 ASP B 511 REMARK 465 GLY B 512 REMARK 465 ILE B 513 REMARK 465 ALA B 514 REMARK 465 THR B 515 REMARK 465 GLY B 548 REMARK 465 MET B 549 REMARK 465 VAL B 550 REMARK 465 VAL B 563 REMARK 465 GLY B 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 516 CB CG CD OE1 NE2 REMARK 470 LYS A 517 CB CG CD CE NZ REMARK 470 GLN A 518 CB CG CD OE1 NE2 REMARK 470 ALA A 519 CB REMARK 470 VAL A 520 CB CG1 CG2 REMARK 470 SER A 521 CB OG REMARK 470 ILE A 523 CB CG1 CG2 CD1 REMARK 470 THR A 524 CB OG1 CG2 REMARK 470 GLN B 516 CB CG CD OE1 NE2 REMARK 470 LYS B 517 CB CG CD CE NZ REMARK 470 GLN B 518 CB CG CD OE1 NE2 REMARK 470 ALA B 519 CB REMARK 470 VAL B 520 CB CG1 CG2 REMARK 470 SER B 521 CB OG REMARK 470 ILE B 523 CB CG1 CG2 CD1 REMARK 470 THR B 524 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 503 O HOH B 769 1.91 REMARK 500 OE2 GLU A 398 O HOH A 710 1.92 REMARK 500 OH TYR B 438 O HOH B 800 1.93 REMARK 500 O HOH B 745 O HOH B 802 1.94 REMARK 500 O HOH A 797 O HOH A 805 1.95 REMARK 500 OH TYR A 438 O HOH A 805 1.96 REMARK 500 O HOH B 761 O HOH B 777 1.96 REMARK 500 O HOH A 768 O HOH A 775 1.98 REMARK 500 O HOH B 799 O HOH B 805 1.98 REMARK 500 OE1 GLU A 484 O HOH A 725 1.99 REMARK 500 O HOH A 802 O HOH A 812 2.02 REMARK 500 O HOH A 760 O HOH A 811 2.05 REMARK 500 OE1 GLN B 474 O HOH B 739 2.06 REMARK 500 O ARG A 494 O HOH A 775 2.07 REMARK 500 OG1 THR A 429 O HOH A 704 2.08 REMARK 500 O ASP A 413 O HOH A 801 2.10 REMARK 500 O2 TRS B 601 O HOH B 795 2.11 REMARK 500 O2 DTT B 603 O HOH B 774 2.12 REMARK 500 OG SER B 473 O HOH B 743 2.14 REMARK 500 O HOH A 760 O HOH A 770 2.14 REMARK 500 O HOH A 740 O HOH A 806 2.14 REMARK 500 ND2 ASN A 561 O HOH A 810 2.14 REMARK 500 OG1 THR A 378 O HOH A 808 2.15 REMARK 500 NH1 ARG B 364 O GLY B 421 2.17 REMARK 500 O HOH B 736 O HOH B 739 2.17 REMARK 500 NE ARG B 356 O HOH B 768 2.17 REMARK 500 O HOH B 777 O HOH B 785 2.18 REMARK 500 NE ARG A 471 O HOH A 729 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 757 O HOH B 773 2656 2.15 REMARK 500 O HOH B 742 O HOH B 742 2657 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 367 -168.15 -127.18 REMARK 500 ASN A 389 24.89 46.56 REMARK 500 GLU A 401 -86.30 60.11 REMARK 500 GLU A 422 3.46 58.86 REMARK 500 VAL A 458 -66.17 -107.84 REMARK 500 PRO A 476 11.18 -68.58 REMARK 500 LYS A 517 -128.56 72.62 REMARK 500 GLN A 518 145.61 86.05 REMARK 500 SER A 521 -132.02 161.74 REMARK 500 THR A 524 -29.83 113.09 REMARK 500 THR A 560 58.73 -142.69 REMARK 500 THR B 367 -168.32 -125.23 REMARK 500 ASN B 389 25.53 45.28 REMARK 500 GLU B 401 -85.56 59.66 REMARK 500 GLU B 422 6.88 -67.80 REMARK 500 VAL B 458 -66.48 -107.59 REMARK 500 PHE B 475 75.67 -153.97 REMARK 500 LYS B 517 -128.49 -135.99 REMARK 500 GLN B 518 145.39 85.91 REMARK 500 ALA B 519 -97.68 -147.30 REMARK 500 VAL B 520 -165.82 107.95 REMARK 500 SER B 521 -130.19 160.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DTT A 603 O2 REMARK 620 2 HOH A 783 O 62.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 771 O REMARK 620 2 HOH B 774 O 82.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NK7 RELATED DB: PDB REMARK 900 STRUCTURE OF A HOMOLOGOUS PROTEIN IN D. MELANOGASTER REMARK 900 RELATED ID: 4G7N RELATED DB: PDB REMARK 900 STRUCTURE OF A HOMOLOGOUS PROTEIN IN D. MELANOGASTER DBREF 4NKB A 338 564 UNP Q9GT24 ZYG1_CAEEL 338 564 DBREF 4NKB B 338 564 UNP Q9GT24 ZYG1_CAEEL 338 564 SEQADV 4NKB GLY A 335 UNP Q9GT24 EXPRESSION TAG SEQADV 4NKB SER A 336 UNP Q9GT24 EXPRESSION TAG SEQADV 4NKB MET A 337 UNP Q9GT24 EXPRESSION TAG SEQADV 4NKB GLY B 335 UNP Q9GT24 EXPRESSION TAG SEQADV 4NKB SER B 336 UNP Q9GT24 EXPRESSION TAG SEQADV 4NKB MET B 337 UNP Q9GT24 EXPRESSION TAG SEQRES 1 A 230 GLY SER MET GLY THR VAL PRO PRO SER ARG GLU ASP ARG SEQRES 2 A 230 ASN ARG SER GLN LEU TRP PRO ILE ARG MET ASP ARG LEU SEQRES 3 A 230 GLU GLY GLN ARG VAL CYS THR ALA GLY GLY ARG TYR ILE SEQRES 4 A 230 VAL GLU LEU ASP THR ARG CYS ARG PHE GLU VAL ALA ALA SEQRES 5 A 230 GLN GLY ASN PHE VAL LYS ARG ILE LEU ILE VAL GLU VAL SEQRES 6 A 230 ASP GLU MET VAL GLN THR VAL TYR VAL HIS ARG ILE PRO SEQRES 7 A 230 ASP ARG THR VAL ARG GLY ARG ASN GLY GLU GLU GLU LEU SEQRES 8 A 230 ILE THR LEU THR ASN ASN PRO PHE VAL TYR THR SER TYR SEQRES 9 A 230 SER GLN MET PRO LYS GLU VAL GLN ASN ASP TYR MET ARG SEQRES 10 A 230 LEU GLN LYS MET VAL ALA VAL THR ILE SER GLY ARG VAL SEQRES 11 A 230 ALA LYS VAL THR PHE ARG ARG PRO SER GLN PHE PRO ASP SEQRES 12 A 230 ALA GLN ALA GLN LEU MET GLU ASN GLY ASP LEU ARG ILE SEQRES 13 A 230 LYS LEU PRO ARG SER VAL ILE VAL ARG LYS MET ASP ASN SEQRES 14 A 230 GLY GLU ILE PHE ASN CYS ILE ASP GLY ILE ALA THR GLN SEQRES 15 A 230 LYS GLN ALA VAL SER GLY ILE THR LEU THR LYS VAL ASN SEQRES 16 A 230 GLU VAL TYR LYS TYR LEU ILE ARG PHE GLU GLN CYS LEU SEQRES 17 A 230 ASN GLY MET ASP ARG GLY MET VAL CYS PHE PRO ILE VAL SEQRES 18 A 230 PHE SER ALA GLY THR ASN MET VAL GLY SEQRES 1 B 230 GLY SER MET GLY THR VAL PRO PRO SER ARG GLU ASP ARG SEQRES 2 B 230 ASN ARG SER GLN LEU TRP PRO ILE ARG MET ASP ARG LEU SEQRES 3 B 230 GLU GLY GLN ARG VAL CYS THR ALA GLY GLY ARG TYR ILE SEQRES 4 B 230 VAL GLU LEU ASP THR ARG CYS ARG PHE GLU VAL ALA ALA SEQRES 5 B 230 GLN GLY ASN PHE VAL LYS ARG ILE LEU ILE VAL GLU VAL SEQRES 6 B 230 ASP GLU MET VAL GLN THR VAL TYR VAL HIS ARG ILE PRO SEQRES 7 B 230 ASP ARG THR VAL ARG GLY ARG ASN GLY GLU GLU GLU LEU SEQRES 8 B 230 ILE THR LEU THR ASN ASN PRO PHE VAL TYR THR SER TYR SEQRES 9 B 230 SER GLN MET PRO LYS GLU VAL GLN ASN ASP TYR MET ARG SEQRES 10 B 230 LEU GLN LYS MET VAL ALA VAL THR ILE SER GLY ARG VAL SEQRES 11 B 230 ALA LYS VAL THR PHE ARG ARG PRO SER GLN PHE PRO ASP SEQRES 12 B 230 ALA GLN ALA GLN LEU MET GLU ASN GLY ASP LEU ARG ILE SEQRES 13 B 230 LYS LEU PRO ARG SER VAL ILE VAL ARG LYS MET ASP ASN SEQRES 14 B 230 GLY GLU ILE PHE ASN CYS ILE ASP GLY ILE ALA THR GLN SEQRES 15 B 230 LYS GLN ALA VAL SER GLY ILE THR LEU THR LYS VAL ASN SEQRES 16 B 230 GLU VAL TYR LYS TYR LEU ILE ARG PHE GLU GLN CYS LEU SEQRES 17 B 230 ASN GLY MET ASP ARG GLY MET VAL CYS PHE PRO ILE VAL SEQRES 18 B 230 PHE SER ALA GLY THR ASN MET VAL GLY HET MG A 601 1 HET MG A 602 1 HET DTT A 603 8 HET TRS B 601 8 HET MG B 602 1 HET DTT B 603 8 HETNAM MG MAGNESIUM ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN DTT 1,4-DITHIOTHREITOL HETSYN TRS TRIS BUFFER FORMUL 3 MG 3(MG 2+) FORMUL 5 DTT 2(C4 H10 O2 S2) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 9 HOH *226(H2 O) HELIX 1 1 SER A 437 MET A 441 5 5 HELIX 2 2 PRO A 442 VAL A 458 1 17 HELIX 3 3 THR A 524 ASN A 543 1 20 HELIX 4 4 SER B 437 MET B 441 5 5 HELIX 5 5 PRO B 442 VAL B 458 1 17 HELIX 6 6 VAL B 458 VAL B 464 1 7 HELIX 7 7 GLY B 522 ASN B 543 1 22 SHEET 1 A 6 ARG A 364 CYS A 366 0 SHEET 2 A 6 GLY A 370 LEU A 376 -1 O TYR A 372 N VAL A 365 SHEET 3 A 6 ARG A 379 ALA A 385 -1 O ARG A 381 N ILE A 373 SHEET 4 A 6 VAL A 391 ASP A 400 -1 O LEU A 395 N PHE A 382 SHEET 5 A 6 VAL A 403 ARG A 410 -1 O TYR A 407 N ILE A 396 SHEET 6 A 6 PHE A 433 TYR A 435 -1 O TYR A 435 N VAL A 406 SHEET 1 B 6 ILE A 506 ASN A 508 0 SHEET 2 B 6 SER A 495 ARG A 499 -1 N VAL A 498 O PHE A 507 SHEET 3 B 6 LEU A 488 LEU A 492 -1 N LEU A 492 O SER A 495 SHEET 4 B 6 GLN A 479 MET A 483 -1 N GLN A 481 O ARG A 489 SHEET 5 B 6 ALA A 465 ARG A 470 -1 N VAL A 467 O LEU A 482 SHEET 6 B 6 ILE A 554 PHE A 556 1 O PHE A 556 N ARG A 470 SHEET 1 C 6 ARG B 364 CYS B 366 0 SHEET 2 C 6 GLY B 370 LEU B 376 -1 O TYR B 372 N VAL B 365 SHEET 3 C 6 ARG B 379 ALA B 385 -1 O ARG B 381 N ILE B 373 SHEET 4 C 6 VAL B 391 ASP B 400 -1 O LEU B 395 N PHE B 382 SHEET 5 C 6 VAL B 403 ARG B 410 -1 O TYR B 407 N ILE B 396 SHEET 6 C 6 PHE B 433 TYR B 435 -1 O TYR B 435 N VAL B 406 SHEET 1 D 6 ILE B 506 ASN B 508 0 SHEET 2 D 6 SER B 495 ARG B 499 -1 N VAL B 498 O PHE B 507 SHEET 3 D 6 LEU B 488 LEU B 492 -1 N LEU B 492 O SER B 495 SHEET 4 D 6 GLN B 479 MET B 483 -1 N GLN B 481 O ARG B 489 SHEET 5 D 6 ALA B 465 ARG B 470 -1 N PHE B 469 O ALA B 480 SHEET 6 D 6 ILE B 554 SER B 557 1 O PHE B 556 N ARG B 470 LINK MG MG A 602 O2 DTT A 603 1555 1555 2.46 LINK MG MG A 602 O HOH A 783 1555 1555 2.13 LINK MG MG B 602 O HOH B 771 1555 1555 2.50 LINK MG MG B 602 O HOH B 774 1555 1555 2.86 CISPEP 1 TRP A 353 PRO A 354 0 -1.25 CISPEP 2 PHE A 552 PRO A 553 0 -3.08 CISPEP 3 TRP B 353 PRO B 354 0 -1.42 CISPEP 4 GLN B 518 ALA B 519 0 -0.39 CISPEP 5 PHE B 552 PRO B 553 0 -3.66 CISPEP 6 THR B 560 ASN B 561 0 -6.75 CISPEP 7 ASN B 561 MET B 562 0 -9.09 SITE 1 AC1 2 ARG A 470 ARG A 471 SITE 1 AC2 3 ALA A 478 DTT A 603 HOH A 783 SITE 1 AC3 9 ARG A 470 ARG A 471 MG A 602 HOH A 780 SITE 2 AC3 9 HOH A 781 HOH A 783 HOH A 787 ARG B 470 SITE 3 AC3 9 VAL B 555 SITE 1 AC4 3 HOH B 766 HOH B 795 HOH B 798 SITE 1 AC5 4 ARG B 471 DTT B 603 HOH B 771 HOH B 774 SITE 1 AC6 3 ALA B 478 MG B 602 HOH B 774 CRYST1 53.383 60.093 87.515 90.00 93.31 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018733 0.000000 0.001083 0.00000 SCALE2 0.000000 0.016641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011446 0.00000