HEADER PROTEIN BINDING 12-NOV-13 4NKN TITLE THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF COMMD9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMM DOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-116); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COMMD9, HSPC166; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DOMAIN-SWAPPED TRIMER, ALL HELICAL PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.HOSPENTHAL,D.CELLIGOI,J.S.LOTT REVDAT 2 22-AUG-18 4NKN 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 DBREF SEQADV SEQRES HELIX REVDAT 2 3 1 LINK ATOM REVDAT 1 26-NOV-14 4NKN 0 JRNL AUTH M.D.HEALY,M.K.HOSPENTHAL,R.J.HALL,M.CHANDRA,M.CHILTON, JRNL AUTH 2 V.TILLU,K.E.CHEN,D.J.CELLIGOI,F.J.MCDONALD,P.J.CULLEN, JRNL AUTH 3 J.S.LOTT,B.M.COLLINS,R.GHAI JRNL TITL STRUCTURAL INSIGHTS INTO THE ARCHITECTURE AND MEMBRANE JRNL TITL 2 INTERACTIONS OF THE CONSERVED COMMD PROTEINS. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30067224 JRNL DOI 10.7554/ELIFE.35898 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7914 - 5.5657 1.00 2796 175 0.1878 0.2155 REMARK 3 2 5.5657 - 4.4211 1.00 2769 151 0.1950 0.2179 REMARK 3 3 4.4211 - 3.8633 1.00 2758 146 0.1898 0.2270 REMARK 3 4 3.8633 - 3.5105 1.00 2763 146 0.1976 0.2691 REMARK 3 5 3.5105 - 3.2591 1.00 2743 148 0.2206 0.2768 REMARK 3 6 3.2591 - 3.0671 1.00 2727 155 0.2692 0.3136 REMARK 3 7 3.0671 - 2.9136 1.00 2797 123 0.2725 0.3406 REMARK 3 8 2.9136 - 2.7900 0.92 2499 135 0.3157 0.3687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4939 REMARK 3 ANGLE : 0.396 6695 REMARK 3 CHIRALITY : 0.015 854 REMARK 3 PLANARITY : 0.001 835 REMARK 3 DIHEDRAL : 11.005 1706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 39.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MG NITRATE, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.14679 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.87850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.57828 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.14679 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.87850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 65.57828 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MSE A 0 REMARK 465 GLN A 116 REMARK 465 MSE B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MSE B 0 REMARK 465 ARG B 109 REMARK 465 THR B 110 REMARK 465 GLU B 111 REMARK 465 ALA B 112 REMARK 465 GLN B 113 REMARK 465 ALA B 114 REMARK 465 ASN B 115 REMARK 465 GLN B 116 REMARK 465 MSE C -4 REMARK 465 SER C -3 REMARK 465 GLY C -2 REMARK 465 ALA C -1 REMARK 465 MSE C 0 REMARK 465 ALA C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 115 REMARK 465 GLN C 116 REMARK 465 MSE D -4 REMARK 465 SER D -3 REMARK 465 GLY D -2 REMARK 465 ALA D -1 REMARK 465 MSE D 0 REMARK 465 ALA D 1 REMARK 465 ALA D 2 REMARK 465 ASN D 115 REMARK 465 GLN D 116 REMARK 465 MSE E -4 REMARK 465 SER E -3 REMARK 465 GLY E -2 REMARK 465 ALA E -1 REMARK 465 MSE E 0 REMARK 465 ALA E 1 REMARK 465 ALA E 2 REMARK 465 GLN E 113 REMARK 465 ALA E 114 REMARK 465 ASN E 115 REMARK 465 GLN E 116 REMARK 465 MSE F -4 REMARK 465 SER F -3 REMARK 465 GLY F -2 REMARK 465 ALA F -1 REMARK 465 MSE F 0 REMARK 465 ALA F 1 REMARK 465 SER F 77 REMARK 465 ALA F 78 REMARK 465 THR F 110 REMARK 465 GLU F 111 REMARK 465 ALA F 112 REMARK 465 GLN F 113 REMARK 465 ALA F 114 REMARK 465 ASN F 115 REMARK 465 GLN F 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CE NZ REMARK 470 ARG A 24 CZ NH1 NH2 REMARK 470 GLN A 25 OE1 NE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLN A 61 CD OE1 NE2 REMARK 470 ARG A 65 CZ NH1 NH2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 ASN A 115 CG OD1 ND2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 70 CG1 CG2 REMARK 470 ASP B 74 CG OD1 OD2 REMARK 470 LEU B 75 CG CD1 CD2 REMARK 470 SER B 76 OG REMARK 470 SER B 77 OG REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 LEU B 82 CG CD1 CD2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LEU B 102 CG CD1 CD2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 TRP B 108 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 108 CZ3 CH2 REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 ASP C 21 CG OD1 OD2 REMARK 470 ARG C 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 25 CG CD OE1 NE2 REMARK 470 GLN C 28 CG CD OE1 NE2 REMARK 470 LYS C 39 CD CE NZ REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 LEU D 3 CG CD1 CD2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 GLU D 87 CG CD OE1 OE2 REMARK 470 LEU E 3 CG CD1 CD2 REMARK 470 HIS E 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS E 20 CG CD CE NZ REMARK 470 ASP E 21 CG OD1 OD2 REMARK 470 ARG E 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 25 CG CD OE1 NE2 REMARK 470 GLU E 29 CG CD OE1 OE2 REMARK 470 LYS E 40 CG CD CE NZ REMARK 470 THR E 52 OG1 CG2 REMARK 470 GLU E 54 CG CD OE1 OE2 REMARK 470 GLU E 57 CG CD OE1 OE2 REMARK 470 GLU E 58 CG CD OE1 OE2 REMARK 470 ARG E 109 CZ NH1 NH2 REMARK 470 GLU F 6 CG CD OE1 OE2 REMARK 470 ASP F 21 CG OD1 OD2 REMARK 470 GLN F 53 CG CD OE1 NE2 REMARK 470 GLU F 54 CG CD OE1 OE2 REMARK 470 ARG F 65 NE CZ NH1 NH2 REMARK 470 ARG F 68 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 69 CG CD1 CD2 REMARK 470 VAL F 70 CG1 CG2 REMARK 470 PHE F 72 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP F 74 CG OD1 OD2 REMARK 470 LEU F 75 CG CD1 CD2 REMARK 470 SER F 76 OG REMARK 470 GLU F 79 CG CD OE1 OE2 REMARK 470 ILE F 81 CG1 CG2 CD1 REMARK 470 LEU F 82 CG CD1 CD2 REMARK 470 LEU F 84 CG CD1 CD2 REMARK 470 GLU F 87 CG CD OE1 OE2 REMARK 470 GLN F 91 CG CD OE1 NE2 REMARK 470 LYS F 94 CG CD CE NZ REMARK 470 LYS F 99 CG CD CE NZ REMARK 470 ILE F 100 CG1 CG2 CD1 REMARK 470 LEU F 102 CG CD1 CD2 REMARK 470 GLU F 103 CG CD OE1 OE2 REMARK 470 THR F 107 OG1 CG2 REMARK 470 TRP F 108 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP F 108 CZ3 CH2 REMARK 470 ARG F 109 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 47.98 -85.55 REMARK 500 SER A 76 43.37 -94.50 REMARK 500 LEU B 38 -17.63 -143.80 REMARK 500 ASN B 88 36.18 -90.57 REMARK 500 GLU D 6 13.95 59.72 REMARK 500 SER D 33 99.15 -65.34 REMARK 500 ASP E 74 72.75 53.02 REMARK 500 ALA F 71 -42.73 -130.16 REMARK 500 LEU F 75 83.27 -69.00 REMARK 500 SER F 106 87.39 -60.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 210 DISTANCE = 23.21 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H2M RELATED DB: PDB REMARK 900 THE N-TERMINAL DOMAIN OF ANOTHER HUMAN COMMD FAMILY MEMBER DBREF 4NKN A 1 116 UNP Q9P000 COMD9_HUMAN 2 117 DBREF 4NKN B 1 116 UNP Q9P000 COMD9_HUMAN 2 117 DBREF 4NKN C 1 116 UNP Q9P000 COMD9_HUMAN 2 117 DBREF 4NKN D 1 116 UNP Q9P000 COMD9_HUMAN 2 117 DBREF 4NKN E 1 116 UNP Q9P000 COMD9_HUMAN 2 117 DBREF 4NKN F 1 116 UNP Q9P000 COMD9_HUMAN 2 117 SEQADV 4NKN MSE A -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER A -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY A -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA A -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE A 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE A 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE A 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQADV 4NKN MSE B -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER B -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY B -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA B -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE B 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE B 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE B 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQADV 4NKN MSE C -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER C -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY C -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA C -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE C 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE C 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE C 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQADV 4NKN MSE D -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER D -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY D -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA D -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE D 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE D 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE D 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQADV 4NKN MSE E -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER E -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY E -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA E -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE E 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE E 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE E 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQADV 4NKN MSE F -4 UNP Q9P000 INITIATING METHIONINE SEQADV 4NKN SER F -3 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN GLY F -2 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN ALA F -1 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE F 0 UNP Q9P000 EXPRESSION TAG SEQADV 4NKN MSE F 66 UNP Q9P000 LEU 67 ENGINEERED MUTATION SEQADV 4NKN MSE F 101 UNP Q9P000 ILE 102 ENGINEERED MUTATION SEQRES 1 A 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 A 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 A 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 A 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 A 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 A 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 A 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 A 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 A 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 A 121 GLN ALA ASN GLN SEQRES 1 B 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 B 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 B 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 B 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 B 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 B 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 B 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 B 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 B 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 B 121 GLN ALA ASN GLN SEQRES 1 C 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 C 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 C 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 C 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 C 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 C 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 C 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 C 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 C 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 C 121 GLN ALA ASN GLN SEQRES 1 D 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 D 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 D 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 D 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 D 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 D 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 D 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 D 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 D 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 D 121 GLN ALA ASN GLN SEQRES 1 E 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 E 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 E 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 E 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 E 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 E 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 E 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 E 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 E 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 E 121 GLN ALA ASN GLN SEQRES 1 F 121 MSE SER GLY ALA MSE ALA ALA LEU THR ALA GLU HIS PHE SEQRES 2 F 121 ALA ALA LEU GLN SER LEU LEU LYS ALA SER SER LYS ASP SEQRES 3 F 121 VAL VAL ARG GLN LEU CYS GLN GLU SER PHE SER SER SER SEQRES 4 F 121 ALA LEU GLY LEU LYS LYS LEU LEU ASP VAL THR CYS SER SEQRES 5 F 121 SER LEU SER VAL THR GLN GLU GLU ALA GLU GLU LEU LEU SEQRES 6 F 121 GLN ALA LEU HIS ARG MSE THR ARG LEU VAL ALA PHE ARG SEQRES 7 F 121 ASP LEU SER SER ALA GLU ALA ILE LEU ALA LEU PHE PRO SEQRES 8 F 121 GLU ASN PHE HIS GLN ASN LEU LYS ASN LEU LEU THR LYS SEQRES 9 F 121 ILE MSE LEU GLU HIS VAL SER THR TRP ARG THR GLU ALA SEQRES 10 F 121 GLN ALA ASN GLN MODRES 4NKN MSE A 66 MET SELENOMETHIONINE MODRES 4NKN MSE A 101 MET SELENOMETHIONINE MODRES 4NKN MSE B 66 MET SELENOMETHIONINE MODRES 4NKN MSE B 101 MET SELENOMETHIONINE MODRES 4NKN MSE C 66 MET SELENOMETHIONINE MODRES 4NKN MSE C 101 MET SELENOMETHIONINE MODRES 4NKN MSE D 66 MET SELENOMETHIONINE MODRES 4NKN MSE D 101 MET SELENOMETHIONINE MODRES 4NKN MSE E 66 MET SELENOMETHIONINE MODRES 4NKN MSE E 101 MET SELENOMETHIONINE MODRES 4NKN MSE F 66 MET SELENOMETHIONINE MODRES 4NKN MSE F 101 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 101 8 HET MSE B 66 8 HET MSE B 101 8 HET MSE C 66 8 HET MSE C 101 8 HET MSE D 66 8 HET MSE D 101 8 HET MSE E 66 8 HET MSE E 101 8 HET MSE F 66 8 HET MSE F 101 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 7 HOH *91(H2 O) HELIX 1 1 THR A 4 GLN A 12 1 9 HELIX 2 2 SER A 13 ALA A 17 5 5 HELIX 3 3 SER A 19 SER A 32 1 14 HELIX 4 4 SER A 33 SER A 50 1 18 HELIX 5 5 THR A 52 ASP A 74 1 23 HELIX 6 6 SER A 77 ALA A 83 1 7 HELIX 7 7 HIS A 90 ASN A 115 1 26 HELIX 8 8 THR B 4 GLN B 12 1 9 HELIX 9 9 SER B 13 ALA B 17 5 5 HELIX 10 10 SER B 19 SER B 33 1 15 HELIX 11 11 SER B 34 GLY B 37 5 4 HELIX 12 12 LEU B 38 LEU B 49 1 12 HELIX 13 13 THR B 52 ARG B 73 1 22 HELIX 14 14 HIS B 90 LEU B 102 1 13 HELIX 15 15 THR C 4 GLN C 12 1 9 HELIX 16 16 SER C 13 ALA C 17 5 5 HELIX 17 17 LYS C 20 SER C 33 1 14 HELIX 18 18 SER C 34 LEU C 36 5 3 HELIX 19 19 GLY C 37 SER C 50 1 14 HELIX 20 20 THR C 52 ARG C 73 1 22 HELIX 21 21 SER C 77 ALA C 83 1 7 HELIX 22 22 HIS C 90 ALA C 114 1 25 HELIX 23 38 HIS D 7 GLN D 12 1 6 HELIX 24 39 SER D 13 ALA D 17 5 5 HELIX 25 40 SER D 19 SER D 33 1 15 HELIX 26 41 SER D 34 LEU D 36 5 3 HELIX 27 42 GLY D 37 SER D 50 1 14 HELIX 28 43 THR D 52 ASP D 74 1 23 HELIX 29 44 SER D 77 ALA D 83 1 7 HELIX 30 45 HIS D 90 ALA D 114 1 25 HELIX 31 30 HIS E 7 GLN E 12 1 6 HELIX 32 31 SER E 13 ALA E 17 5 5 HELIX 33 32 ASP E 21 SER E 33 1 13 HELIX 34 33 LEU E 36 SER E 50 1 15 HELIX 35 34 THR E 52 ARG E 73 1 22 HELIX 36 35 SER E 77 LEU E 82 1 6 HELIX 37 36 ALA E 83 PHE E 85 5 3 HELIX 38 37 HIS E 90 GLU E 111 1 22 HELIX 39 23 THR F 4 GLN F 12 1 9 HELIX 40 24 SER F 13 ALA F 17 5 5 HELIX 41 25 SER F 19 SER F 33 1 15 HELIX 42 26 SER F 33 LEU F 49 1 17 HELIX 43 27 THR F 52 ARG F 73 1 22 HELIX 44 28 GLU F 79 PHE F 85 5 7 HELIX 45 29 HIS F 90 GLU F 103 1 14 LINK C ARG A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N THR A 67 1555 1555 1.33 LINK C ILE A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N LEU A 102 1555 1555 1.33 LINK C ARG B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N THR B 67 1555 1555 1.33 LINK C ILE B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N LEU B 102 1555 1555 1.33 LINK C ARG C 65 N MSE C 66 1555 1555 1.33 LINK C MSE C 66 N THR C 67 1555 1555 1.33 LINK C ILE C 100 N MSE C 101 1555 1555 1.33 LINK C MSE C 101 N LEU C 102 1555 1555 1.33 LINK C ARG F 65 N MSE F 66 1555 1555 1.33 LINK C MSE F 66 N THR F 67 1555 1555 1.33 LINK C ILE F 100 N MSE F 101 1555 1555 1.33 LINK C MSE F 101 N LEU F 102 1555 1555 1.33 LINK C ARG E 65 N MSE E 66 1555 1555 1.33 LINK C MSE E 66 N THR E 67 1555 1555 1.33 LINK C ILE E 100 N MSE E 101 1555 1555 1.33 LINK C MSE E 101 N LEU E 102 1555 1555 1.33 LINK C ARG D 65 N MSE D 66 1555 1555 1.33 LINK C MSE D 66 N THR D 67 1555 1555 1.33 LINK C ILE D 100 N MSE D 101 1555 1555 1.33 LINK C MSE D 101 N LEU D 102 1555 1555 1.33 CRYST1 89.690 79.757 131.164 90.00 90.61 90.00 I 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011150 0.000000 0.000119 0.00000 SCALE2 0.000000 0.012538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007624 0.00000