HEADER CHAPERONE 12-NOV-13 4NKP TITLE CRYSTAL STRUCTURE OF A PUTATIVE EXTRACELLULAR HEME-BINDING PROTEIN TITLE 2 (DESPIG_02683) FROM DESULFOVIBRIO PIGER ATCC 29098 AT 1.24 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXTRACELLULAR HEME-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO PIGER; SOURCE 3 ORGANISM_TAXID: 411464; SOURCE 4 STRAIN: ATCC 29098; SOURCE 5 GENE: DESPIG_02683, ZP_03312748.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF03928 FAMILY PROTEIN, DUF336, PUTATIVE CHAPERONE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4NKP 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4NKP 1 JRNL REVDAT 3 22-NOV-17 4NKP 1 REMARK REVDAT 2 24-DEC-14 4NKP 1 TITLE REVDAT 1 11-DEC-13 4NKP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (DESPIG_02683) JRNL TITL 2 FROM DESULFOVIBRIO PIGER ATCC 29098 AT 1.24 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 131689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 475 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 559 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.226 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4767 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3266 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6537 ; 1.230 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8010 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 688 ; 5.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;35.263 ;22.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;12.819 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;18.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5487 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 971 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2986 ; 1.520 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 0.892 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4866 ; 2.342 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 3.093 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1604 ; 4.693 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8033 ; 1.116 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 576 ; 3.999 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7919 ; 2.384 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. SULFATE (SO4) AND GLYCEROL (GOL) MOLECULES REMARK 3 FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4NKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97879,0.97812 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 28.625 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMONIUM SULFATE, 0.1M BICINE PH REMARK 280 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 OCTAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -204.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.96400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 80.96400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 80.96400 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 80.96400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 439 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 LEU A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 GLY B 0 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 LEU B 25 REMARK 465 GLU B 26 REMARK 465 ASN B 27 REMARK 465 GLU B 28 REMARK 465 HIS B 169 REMARK 465 GLY C 0 REMARK 465 ALA C 23 REMARK 465 THR C 24 REMARK 465 GLY D 0 REMARK 465 ALA D 23 REMARK 465 THR D 24 REMARK 465 LEU D 25 REMARK 465 GLU D 26 REMARK 465 ASN D 27 REMARK 465 GLU D 28 REMARK 465 THR D 29 REMARK 465 ALA D 30 REMARK 465 GLY D 31 REMARK 465 HIS D 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 168 CG CD OE1 NE2 REMARK 470 LEU C 25 CG CD1 CD2 REMARK 470 GLU C 28 CG CD OE1 OE2 REMARK 470 GLN D 168 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 152 166.52 69.52 REMARK 500 HIS B 152 119.68 62.91 REMARK 500 HIS D 152 65.76 69.57 REMARK 500 HIS D 152 173.88 63.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420514 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-169 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4NKP A 23 169 UNP B6WX57 B6WX57_9DELT 23 169 DBREF 4NKP B 23 169 UNP B6WX57 B6WX57_9DELT 23 169 DBREF 4NKP C 23 169 UNP B6WX57 B6WX57_9DELT 23 169 DBREF 4NKP D 23 169 UNP B6WX57 B6WX57_9DELT 23 169 SEQADV 4NKP GLY A 0 UNP B6WX57 EXPRESSION TAG SEQADV 4NKP GLY B 0 UNP B6WX57 EXPRESSION TAG SEQADV 4NKP GLY C 0 UNP B6WX57 EXPRESSION TAG SEQADV 4NKP GLY D 0 UNP B6WX57 EXPRESSION TAG SEQRES 1 A 148 GLY ALA THR LEU GLU ASN GLU THR ALA GLY ALA ILE VAL SEQRES 2 A 148 ARG GLU PRO VAL LEU THR GLY GLU GLN ALA GLN ALA MSE SEQRES 3 A 148 VAL GLU VAL VAL MSE HIS GLU ALA ARG GLU SER GLY HIS SEQRES 4 A 148 ALA VAL THR VAL THR VAL VAL ASP ARG SER GLY GLN ILE SEQRES 5 A 148 LEU ALA VAL LEU ARG ASP HIS HIS ALA GLY VAL HIS THR SEQRES 6 A 148 LEU ASN ALA SER TYR LYS LYS ALA TYR THR ALA ALA SER SEQRES 7 A 148 GLN LYS ARG GLU THR VAL ALA ILE ALA ARG GLY ILE ARG SEQRES 8 A 148 ASP GLY SER ILE PRO SER ASP ILE ARG TYR LEU ASP PRO SEQRES 9 A 148 ASN PHE SER LEU MSE GLU GLY GLY ILE PRO ILE ILE LEU SEQRES 10 A 148 GLU ASN VAL VAL VAL GLY GLY ILE GLY VAL GLY GLY ALA SEQRES 11 A 148 HIS GLY SER GLU ASP GLY ARG LEU ALA ARG ILE GLY LEU SEQRES 12 A 148 LEU VAL LEU GLN HIS SEQRES 1 B 148 GLY ALA THR LEU GLU ASN GLU THR ALA GLY ALA ILE VAL SEQRES 2 B 148 ARG GLU PRO VAL LEU THR GLY GLU GLN ALA GLN ALA MSE SEQRES 3 B 148 VAL GLU VAL VAL MSE HIS GLU ALA ARG GLU SER GLY HIS SEQRES 4 B 148 ALA VAL THR VAL THR VAL VAL ASP ARG SER GLY GLN ILE SEQRES 5 B 148 LEU ALA VAL LEU ARG ASP HIS HIS ALA GLY VAL HIS THR SEQRES 6 B 148 LEU ASN ALA SER TYR LYS LYS ALA TYR THR ALA ALA SER SEQRES 7 B 148 GLN LYS ARG GLU THR VAL ALA ILE ALA ARG GLY ILE ARG SEQRES 8 B 148 ASP GLY SER ILE PRO SER ASP ILE ARG TYR LEU ASP PRO SEQRES 9 B 148 ASN PHE SER LEU MSE GLU GLY GLY ILE PRO ILE ILE LEU SEQRES 10 B 148 GLU ASN VAL VAL VAL GLY GLY ILE GLY VAL GLY GLY ALA SEQRES 11 B 148 HIS GLY SER GLU ASP GLY ARG LEU ALA ARG ILE GLY LEU SEQRES 12 B 148 LEU VAL LEU GLN HIS SEQRES 1 C 148 GLY ALA THR LEU GLU ASN GLU THR ALA GLY ALA ILE VAL SEQRES 2 C 148 ARG GLU PRO VAL LEU THR GLY GLU GLN ALA GLN ALA MSE SEQRES 3 C 148 VAL GLU VAL VAL MSE HIS GLU ALA ARG GLU SER GLY HIS SEQRES 4 C 148 ALA VAL THR VAL THR VAL VAL ASP ARG SER GLY GLN ILE SEQRES 5 C 148 LEU ALA VAL LEU ARG ASP HIS HIS ALA GLY VAL HIS THR SEQRES 6 C 148 LEU ASN ALA SER TYR LYS LYS ALA TYR THR ALA ALA SER SEQRES 7 C 148 GLN LYS ARG GLU THR VAL ALA ILE ALA ARG GLY ILE ARG SEQRES 8 C 148 ASP GLY SER ILE PRO SER ASP ILE ARG TYR LEU ASP PRO SEQRES 9 C 148 ASN PHE SER LEU MSE GLU GLY GLY ILE PRO ILE ILE LEU SEQRES 10 C 148 GLU ASN VAL VAL VAL GLY GLY ILE GLY VAL GLY GLY ALA SEQRES 11 C 148 HIS GLY SER GLU ASP GLY ARG LEU ALA ARG ILE GLY LEU SEQRES 12 C 148 LEU VAL LEU GLN HIS SEQRES 1 D 148 GLY ALA THR LEU GLU ASN GLU THR ALA GLY ALA ILE VAL SEQRES 2 D 148 ARG GLU PRO VAL LEU THR GLY GLU GLN ALA GLN ALA MSE SEQRES 3 D 148 VAL GLU VAL VAL MSE HIS GLU ALA ARG GLU SER GLY HIS SEQRES 4 D 148 ALA VAL THR VAL THR VAL VAL ASP ARG SER GLY GLN ILE SEQRES 5 D 148 LEU ALA VAL LEU ARG ASP HIS HIS ALA GLY VAL HIS THR SEQRES 6 D 148 LEU ASN ALA SER TYR LYS LYS ALA TYR THR ALA ALA SER SEQRES 7 D 148 GLN LYS ARG GLU THR VAL ALA ILE ALA ARG GLY ILE ARG SEQRES 8 D 148 ASP GLY SER ILE PRO SER ASP ILE ARG TYR LEU ASP PRO SEQRES 9 D 148 ASN PHE SER LEU MSE GLU GLY GLY ILE PRO ILE ILE LEU SEQRES 10 D 148 GLU ASN VAL VAL VAL GLY GLY ILE GLY VAL GLY GLY ALA SEQRES 11 D 148 HIS GLY SER GLU ASP GLY ARG LEU ALA ARG ILE GLY LEU SEQRES 12 D 148 LEU VAL LEU GLN HIS MODRES 4NKP MSE A 47 MET SELENOMETHIONINE MODRES 4NKP MSE A 52 MET SELENOMETHIONINE MODRES 4NKP MSE A 130 MET SELENOMETHIONINE MODRES 4NKP MSE B 47 MET SELENOMETHIONINE MODRES 4NKP MSE B 52 MET SELENOMETHIONINE MODRES 4NKP MSE B 130 MET SELENOMETHIONINE MODRES 4NKP MSE C 47 MET SELENOMETHIONINE MODRES 4NKP MSE C 52 MET SELENOMETHIONINE MODRES 4NKP MSE C 130 MET SELENOMETHIONINE MODRES 4NKP MSE D 47 MET SELENOMETHIONINE MODRES 4NKP MSE D 52 MET SELENOMETHIONINE MODRES 4NKP MSE D 130 MET SELENOMETHIONINE HET MSE A 47 13 HET MSE A 52 8 HET MSE A 130 18 HET MSE B 47 8 HET MSE B 52 13 HET MSE B 130 13 HET MSE C 47 13 HET MSE C 52 13 HET MSE C 130 13 HET MSE D 47 8 HET MSE D 52 13 HET MSE D 130 18 HET SO4 A 201 5 HET GOL A 202 12 HET GOL B 201 12 HET GOL B 202 6 HET GOL B 203 6 HET SO4 C 201 5 HET GOL C 202 6 HET SO4 D 201 5 HET GOL D 202 6 HET GOL D 203 12 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 15 HOH *559(H2 O) HELIX 1 1 THR A 40 GLY A 59 1 20 HELIX 2 2 VAL A 84 LYS A 101 1 18 HELIX 3 3 GLU A 103 ASP A 113 1 11 HELIX 4 4 PRO A 117 LEU A 123 5 7 HELIX 5 5 ALA A 151 VAL A 166 1 16 HELIX 6 6 THR B 40 GLY B 59 1 20 HELIX 7 7 VAL B 84 LYS B 101 1 18 HELIX 8 8 GLU B 103 ASP B 113 1 11 HELIX 9 9 PRO B 117 LEU B 123 5 7 HELIX 10 10 GLY B 153 VAL B 166 1 14 HELIX 11 11 THR C 40 SER C 58 1 19 HELIX 12 12 VAL C 84 LYS C 101 1 18 HELIX 13 13 GLU C 103 ASP C 113 1 11 HELIX 14 14 PRO C 117 LEU C 123 5 7 HELIX 15 15 HIS C 152 LEU C 165 1 14 HELIX 16 16 VAL C 166 GLN C 168 5 3 HELIX 17 17 THR D 40 SER D 58 1 19 HELIX 18 18 VAL D 84 LYS D 101 1 18 HELIX 19 19 GLU D 103 ASP D 113 1 11 HELIX 20 20 PRO D 117 LEU D 123 5 7 HELIX 21 21 GLY D 153 LEU D 164 1 12 HELIX 22 22 LEU D 165 GLN D 168 5 4 SHEET 1 A 8 GLY A 133 LEU A 138 0 SHEET 2 A 8 VAL A 141 GLY A 149 -1 O VAL A 143 N ILE A 136 SHEET 3 A 8 THR A 63 VAL A 67 -1 N VAL A 67 O GLY A 145 SHEET 4 A 8 ILE A 73 ARG A 78 -1 O LEU A 74 N VAL A 66 SHEET 5 A 8 ILE B 73 ARG B 78 -1 O LEU B 74 N ARG A 78 SHEET 6 A 8 THR B 63 ASP B 68 -1 N VAL B 66 O LEU B 74 SHEET 7 A 8 VAL B 141 GLY B 149 -1 O GLY B 145 N VAL B 67 SHEET 8 A 8 GLY B 133 LEU B 138 -1 N ILE B 136 O VAL B 143 SHEET 1 B 8 GLY C 133 LEU C 138 0 SHEET 2 B 8 VAL C 141 GLY C 149 -1 O VAL C 143 N ILE C 136 SHEET 3 B 8 THR C 63 ASP C 68 -1 N VAL C 67 O GLY C 145 SHEET 4 B 8 ILE C 73 ARG C 78 -1 O LEU C 74 N VAL C 66 SHEET 5 B 8 ILE D 73 ARG D 78 -1 O LEU D 74 N ARG C 78 SHEET 6 B 8 THR D 63 ASP D 68 -1 N VAL D 66 O LEU D 74 SHEET 7 B 8 VAL D 141 GLY D 149 -1 O GLY D 147 N THR D 65 SHEET 8 B 8 GLY D 133 LEU D 138 -1 N ILE D 136 O VAL D 143 LINK C ALA A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N VAL A 48 1555 1555 1.33 LINK C VAL A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N HIS A 53 1555 1555 1.33 LINK C LEU A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLU A 131 1555 1555 1.33 LINK C ALA B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N VAL B 48 1555 1555 1.32 LINK C VAL B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N HIS B 53 1555 1555 1.33 LINK C LEU B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N GLU B 131 1555 1555 1.33 LINK C ALA C 46 N MSE C 47 1555 1555 1.33 LINK C MSE C 47 N VAL C 48 1555 1555 1.33 LINK C VAL C 51 N MSE C 52 1555 1555 1.33 LINK C MSE C 52 N HIS C 53 1555 1555 1.32 LINK C LEU C 129 N MSE C 130 1555 1555 1.33 LINK C MSE C 130 N GLU C 131 1555 1555 1.33 LINK C ALA D 46 N MSE D 47 1555 1555 1.33 LINK C MSE D 47 N VAL D 48 1555 1555 1.33 LINK C VAL D 51 N MSE D 52 1555 1555 1.33 LINK C MSE D 52 N HIS D 53 1555 1555 1.33 LINK C LEU D 129 N MSE D 130 1555 1555 1.32 LINK C MSE D 130 N GLU D 131 1555 1555 1.33 SITE 1 AC1 12 HIS A 85 ALA A 89 LYS A 93 LEU A 123 SITE 2 AC1 12 MSE A 130 GLY A 149 GLY A 150 ALA A 151 SITE 3 AC1 12 HIS A 152 ASP A 156 HOH A 371 HOH A 442 SITE 1 AC2 7 ASN A 88 TYR A 91 HOH A 311 HOH A 352 SITE 2 AC2 7 HOH A 360 HOH A 404 HOH A 436 SITE 1 AC3 10 ARG B 69 HIS B 80 HIS B 81 ALA B 82 SITE 2 AC3 10 GLY B 83 ALA B 98 SER B 99 LYS B 101 SITE 3 AC3 10 HOH B 318 HOH B 342 SITE 1 AC4 11 HIS B 85 ALA B 89 LYS B 93 LEU B 123 SITE 2 AC4 11 MSE B 130 GLY B 149 GLY B 150 ALA B 151 SITE 3 AC4 11 HIS B 152 ASP B 156 HOH B 428 SITE 1 AC5 5 HOH A 436 ASN B 88 TYR B 91 HOH B 330 SITE 2 AC5 5 HOH B 357 SITE 1 AC6 12 HIS C 85 ALA C 89 LYS C 93 LEU C 123 SITE 2 AC6 12 MSE C 130 GLY C 149 GLY C 150 ALA C 151 SITE 3 AC6 12 ASP C 156 HOH C 359 HOH C 361 HOH C 375 SITE 1 AC7 7 LEU C 87 ASN C 88 TYR C 91 HOH C 325 SITE 2 AC7 7 HOH C 336 HOH C 369 HOH D 408 SITE 1 AC8 12 HIS D 85 ALA D 89 LYS D 93 LEU D 123 SITE 2 AC8 12 MSE D 130 GLY D 149 GLY D 150 ALA D 151 SITE 3 AC8 12 HIS D 152 ASP D 156 HOH D 377 HOH D 415 SITE 1 AC9 5 ASN D 88 TYR D 91 HOH D 341 HOH D 395 SITE 2 AC9 5 HOH D 408 SITE 1 BC1 12 ARG D 69 ARG D 78 HIS D 80 HIS D 81 SITE 2 BC1 12 ALA D 82 GLY D 83 ALA D 98 SER D 99 SITE 3 BC1 12 LYS D 101 HOH D 326 HOH D 330 HOH D 336 CRYST1 80.964 80.964 72.927 90.00 90.00 90.00 P 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012351 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013712 0.00000