HEADER TRANSFERASE/RNA 13-NOV-13 4NKU TITLE STRUCTURE OF CID1 IN COMPLEX WITH ITS SHORT PRODUCT APU COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) RNA POLYMERASE PROTEIN CID1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 40-377; COMPND 5 SYNONYM: CAFFEINE-INDUCED DEATH PROTEIN 1; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-R(*AP*U)-3'; COMPND 11 CHAIN: D, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: CID1, SPAC19D5.03; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET42-BASED; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS POLY(U) POLYMERASE, NUCLEOTIDYL TRANFER DOMAIN, PAP-ASSOCIATED KEYWDS 2 DOMAIN, UTP BINDING, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.MUNOZ-TELLO,C.GABUS,S.THORE REVDAT 4 20-SEP-23 4NKU 1 REMARK SEQADV LINK REVDAT 3 26-MAR-14 4NKU 1 JRNL REVDAT 2 15-JAN-14 4NKU 1 JRNL REVDAT 1 18-DEC-13 4NKU 0 JRNL AUTH P.MUNOZ-TELLO,C.GABUS,S.THORE JRNL TITL A CRITICAL SWITCH IN THE ENZYMATIC PROPERTIES OF THE CID1 JRNL TITL 2 PROTEIN DECIPHERED FROM ITS PRODUCT-BOUND CRYSTAL STRUCTURE. JRNL REF NUCLEIC ACIDS RES. V. 42 3372 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24322298 JRNL DOI 10.1093/NAR/GKT1278 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3497 - 4.6739 0.98 3455 140 0.1816 0.2185 REMARK 3 2 4.6739 - 3.7103 1.00 3439 140 0.1494 0.1689 REMARK 3 3 3.7103 - 3.2415 1.00 3414 145 0.1619 0.2040 REMARK 3 4 3.2415 - 2.9452 1.00 3418 141 0.1839 0.2227 REMARK 3 5 2.9452 - 2.7341 1.00 3395 156 0.1899 0.2290 REMARK 3 6 2.7341 - 2.5729 1.00 3376 146 0.1947 0.2747 REMARK 3 7 2.5729 - 2.4441 1.00 3424 131 0.1847 0.2512 REMARK 3 8 2.4441 - 2.3377 1.00 3371 148 0.1854 0.2603 REMARK 3 9 2.3377 - 2.2477 1.00 3392 150 0.1881 0.2605 REMARK 3 10 2.2477 - 2.1701 0.99 3422 133 0.1972 0.2723 REMARK 3 11 2.1701 - 2.1023 1.00 3359 147 0.1963 0.2709 REMARK 3 12 2.1023 - 2.0422 0.99 3348 148 0.1985 0.2799 REMARK 3 13 2.0422 - 1.9884 0.99 3396 142 0.2079 0.2323 REMARK 3 14 1.9884 - 1.9400 0.99 3359 134 0.2175 0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5339 REMARK 3 ANGLE : 1.077 7220 REMARK 3 CHIRALITY : 0.078 794 REMARK 3 PLANARITY : 0.006 899 REMARK 3 DIHEDRAL : 15.364 2013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9394 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS PACKAGE REMARK 200 DATA SCALING SOFTWARE : XDS PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 45.337 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4EP7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE/MES, PH 6.1, 20% REMARK 280 GLYCEROL, 10% PEG4000, 126 MM HALOGENS (SODIUM IODIDE, SODIUM REMARK 280 BROMIDE, SODIUM FLUORIDE), 10 MM TCEP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.54500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 SER A 110 REMARK 465 ARG A 111 REMARK 465 VAL A 112 REMARK 465 GLN A 113 REMARK 465 SER A 114 REMARK 465 ASP A 115 REMARK 465 ALA A 309 REMARK 465 THR A 310 REMARK 465 GLU A 311 REMARK 465 HIS A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 ALA A 316 REMARK 465 ASP A 317 REMARK 465 GLN A 318 REMARK 465 ILE A 319 REMARK 465 ILE A 320 REMARK 465 LYS A 321 REMARK 465 ASP A 322 REMARK 465 GLY B 37 REMARK 465 ASP B 38 REMARK 465 SER B 110 REMARK 465 ARG B 111 REMARK 465 VAL B 112 REMARK 465 GLN B 113 REMARK 465 SER B 114 REMARK 465 ASP B 115 REMARK 465 ARG B 137 REMARK 465 ALA B 138 REMARK 465 ARG B 139 REMARK 465 ASP B 148 REMARK 465 THR B 149 REMARK 465 LYS B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 PHE B 153 REMARK 465 GLY B 154 REMARK 465 ALA B 155 REMARK 465 SER B 156 REMARK 465 GLU B 311 REMARK 465 HIS B 312 REMARK 465 THR B 313 REMARK 465 GLY B 314 REMARK 465 SER B 315 REMARK 465 ALA B 316 REMARK 465 ASP B 317 REMARK 465 GLN B 318 REMARK 465 ILE B 319 REMARK 465 ILE B 320 REMARK 465 LYS B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 BR BR B 402 O HOH B 593 2.01 REMARK 500 O HOH A 573 O HOH A 605 2.04 REMARK 500 OH TYR B 370 O HOH B 535 2.06 REMARK 500 O HOH A 610 O HOH A 689 2.07 REMARK 500 O3' U H 59 O HOH H 103 2.10 REMARK 500 OP1 U H 59 O HOH H 102 2.11 REMARK 500 OP1 U D 59 O HOH D 206 2.11 REMARK 500 O HOH A 672 O HOH D 201 2.17 REMARK 500 O ALA A 138 O HOH A 616 2.17 REMARK 500 OH TYR A 370 O HOH A 629 2.19 REMARK 500 O HOH A 683 O HOH A 685 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 592 O HOH B 644 2656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 140 87.60 66.77 REMARK 500 THR A 208 -150.68 -112.04 REMARK 500 VAL A 225 -61.04 -106.47 REMARK 500 TRP A 306 66.30 -104.99 REMARK 500 SER A 365 177.00 -57.38 REMARK 500 PRO A 367 108.20 14.95 REMARK 500 THR B 208 -152.81 -107.55 REMARK 500 TRP B 306 69.25 -115.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 366 PRO A 367 -131.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 619 O REMARK 620 2 HOH A 680 O 52.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NKT RELATED DB: PDB DBREF 4NKU A 40 377 UNP O13833 CID1_SCHPO 40 377 DBREF 4NKU B 40 377 UNP O13833 CID1_SCHPO 40 377 DBREF 4NKU D 58 59 PDB 4NKU 4NKU 58 59 DBREF 4NKU H 58 59 PDB 4NKU 4NKU 58 59 SEQADV 4NKU GLY A 37 UNP O13833 EXPRESSION TAG SEQADV 4NKU ASP A 38 UNP O13833 EXPRESSION TAG SEQADV 4NKU MET A 39 UNP O13833 EXPRESSION TAG SEQADV 4NKU ALA A 160 UNP O13833 ASP 160 ENGINEERED MUTATION SEQADV 4NKU GLY B 37 UNP O13833 EXPRESSION TAG SEQADV 4NKU ASP B 38 UNP O13833 EXPRESSION TAG SEQADV 4NKU MET B 39 UNP O13833 EXPRESSION TAG SEQADV 4NKU ALA B 160 UNP O13833 ASP 160 ENGINEERED MUTATION SEQRES 1 A 341 GLY ASP MET SER HIS LYS GLU PHE THR LYS PHE CYS TYR SEQRES 2 A 341 GLU VAL TYR ASN GLU ILE LYS ILE SER ASP LYS GLU PHE SEQRES 3 A 341 LYS GLU LYS ARG ALA ALA LEU ASP THR LEU ARG LEU CYS SEQRES 4 A 341 LEU LYS ARG ILE SER PRO ASP ALA GLU LEU VAL ALA PHE SEQRES 5 A 341 GLY SER LEU GLU SER GLY LEU ALA LEU LYS ASN SER ASP SEQRES 6 A 341 MET ASP LEU CYS VAL LEU MET ASP SER ARG VAL GLN SER SEQRES 7 A 341 ASP THR ILE ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA SEQRES 8 A 341 GLU GLY PHE GLU GLY LYS PHE LEU GLN ARG ALA ARG ILE SEQRES 9 A 341 PRO ILE ILE LYS LEU THR SER ASP THR LYS ASN GLY PHE SEQRES 10 A 341 GLY ALA SER PHE GLN CYS ALA ILE GLY PHE ASN ASN ARG SEQRES 11 A 341 LEU ALA ILE HIS ASN THR LEU LEU LEU SER SER TYR THR SEQRES 12 A 341 LYS LEU ASP ALA ARG LEU LYS PRO MET VAL LEU LEU VAL SEQRES 13 A 341 LYS HIS TRP ALA LYS ARG LYS GLN ILE ASN SER PRO TYR SEQRES 14 A 341 PHE GLY THR LEU SER SER TYR GLY TYR VAL LEU MET VAL SEQRES 15 A 341 LEU TYR TYR LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE SEQRES 16 A 341 PRO ASN LEU LEU LEU SER PRO LEU LYS GLN GLU LYS ILE SEQRES 17 A 341 VAL ASP GLY PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU SEQRES 18 A 341 ASP ILE PRO PRO SER GLN ASN TYR SER SER LEU GLY SER SEQRES 19 A 341 LEU LEU HIS GLY PHE PHE ARG PHE TYR ALA TYR LYS PHE SEQRES 20 A 341 GLU PRO ARG GLU LYS VAL VAL THR PHE ARG ARG PRO ASP SEQRES 21 A 341 GLY TYR LEU THR LYS GLN GLU LYS GLY TRP THR SER ALA SEQRES 22 A 341 THR GLU HIS THR GLY SER ALA ASP GLN ILE ILE LYS ASP SEQRES 23 A 341 ARG TYR ILE LEU ALA ILE GLU ASP PRO PHE GLU ILE SER SEQRES 24 A 341 HIS ASN VAL GLY ARG THR VAL SER SER SER GLY LEU TYR SEQRES 25 A 341 ARG ILE ARG GLY GLU PHE MET ALA ALA SER ARG LEU LEU SEQRES 26 A 341 ASN SER ARG SER TYR PRO ILE PRO TYR ASP SER LEU PHE SEQRES 27 A 341 GLU GLU ALA SEQRES 1 B 341 GLY ASP MET SER HIS LYS GLU PHE THR LYS PHE CYS TYR SEQRES 2 B 341 GLU VAL TYR ASN GLU ILE LYS ILE SER ASP LYS GLU PHE SEQRES 3 B 341 LYS GLU LYS ARG ALA ALA LEU ASP THR LEU ARG LEU CYS SEQRES 4 B 341 LEU LYS ARG ILE SER PRO ASP ALA GLU LEU VAL ALA PHE SEQRES 5 B 341 GLY SER LEU GLU SER GLY LEU ALA LEU LYS ASN SER ASP SEQRES 6 B 341 MET ASP LEU CYS VAL LEU MET ASP SER ARG VAL GLN SER SEQRES 7 B 341 ASP THR ILE ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA SEQRES 8 B 341 GLU GLY PHE GLU GLY LYS PHE LEU GLN ARG ALA ARG ILE SEQRES 9 B 341 PRO ILE ILE LYS LEU THR SER ASP THR LYS ASN GLY PHE SEQRES 10 B 341 GLY ALA SER PHE GLN CYS ALA ILE GLY PHE ASN ASN ARG SEQRES 11 B 341 LEU ALA ILE HIS ASN THR LEU LEU LEU SER SER TYR THR SEQRES 12 B 341 LYS LEU ASP ALA ARG LEU LYS PRO MET VAL LEU LEU VAL SEQRES 13 B 341 LYS HIS TRP ALA LYS ARG LYS GLN ILE ASN SER PRO TYR SEQRES 14 B 341 PHE GLY THR LEU SER SER TYR GLY TYR VAL LEU MET VAL SEQRES 15 B 341 LEU TYR TYR LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE SEQRES 16 B 341 PRO ASN LEU LEU LEU SER PRO LEU LYS GLN GLU LYS ILE SEQRES 17 B 341 VAL ASP GLY PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU SEQRES 18 B 341 ASP ILE PRO PRO SER GLN ASN TYR SER SER LEU GLY SER SEQRES 19 B 341 LEU LEU HIS GLY PHE PHE ARG PHE TYR ALA TYR LYS PHE SEQRES 20 B 341 GLU PRO ARG GLU LYS VAL VAL THR PHE ARG ARG PRO ASP SEQRES 21 B 341 GLY TYR LEU THR LYS GLN GLU LYS GLY TRP THR SER ALA SEQRES 22 B 341 THR GLU HIS THR GLY SER ALA ASP GLN ILE ILE LYS ASP SEQRES 23 B 341 ARG TYR ILE LEU ALA ILE GLU ASP PRO PHE GLU ILE SER SEQRES 24 B 341 HIS ASN VAL GLY ARG THR VAL SER SER SER GLY LEU TYR SEQRES 25 B 341 ARG ILE ARG GLY GLU PHE MET ALA ALA SER ARG LEU LEU SEQRES 26 B 341 ASN SER ARG SER TYR PRO ILE PRO TYR ASP SER LEU PHE SEQRES 27 B 341 GLU GLU ALA SEQRES 1 D 2 A U SEQRES 1 H 2 A U HET MG A 401 1 HET MG A 402 1 HET BR A 403 1 HET MG B 401 1 HET BR B 402 1 HET BR D 101 1 HETNAM MG MAGNESIUM ION HETNAM BR BROMIDE ION FORMUL 5 MG 3(MG 2+) FORMUL 7 BR 3(BR 1-) FORMUL 11 HOH *356(H2 O) HELIX 1 1 HIS A 41 LYS A 56 1 16 HELIX 2 2 SER A 58 ARG A 78 1 21 HELIX 3 3 GLY A 89 GLY A 94 1 6 HELIX 4 4 ILE A 117 GLU A 128 1 12 HELIX 5 5 ASN A 165 ASP A 182 1 18 HELIX 6 6 ARG A 184 LYS A 199 1 16 HELIX 7 7 SER A 203 GLY A 207 5 5 HELIX 8 8 SER A 210 VAL A 225 1 16 HELIX 9 9 LYS A 255 ILE A 259 5 5 HELIX 10 10 SER A 267 LYS A 282 1 16 HELIX 11 11 THR A 300 GLY A 305 1 6 HELIX 12 12 SER A 343 SER A 363 1 21 HELIX 13 13 PRO A 369 GLU A 375 5 7 HELIX 14 14 HIS B 41 LYS B 56 1 16 HELIX 15 15 SER B 58 ARG B 78 1 21 HELIX 16 16 GLY B 89 GLY B 94 1 6 HELIX 17 17 ILE B 117 GLU B 128 1 12 HELIX 18 18 ASN B 165 ASP B 182 1 18 HELIX 19 19 ARG B 184 LYS B 199 1 16 HELIX 20 20 SER B 203 GLY B 207 5 5 HELIX 21 21 SER B 210 VAL B 225 1 16 HELIX 22 22 ASN B 233 SER B 237 5 5 HELIX 23 23 LYS B 255 ILE B 259 5 5 HELIX 24 24 SER B 267 LYS B 282 1 16 HELIX 25 25 THR B 300 GLY B 305 1 6 HELIX 26 26 ASN B 337 VAL B 342 5 6 HELIX 27 27 SER B 343 ASN B 362 1 20 HELIX 28 28 PRO B 369 GLU B 375 5 7 SHEET 1 A 5 GLU A 84 PHE A 88 0 SHEET 2 A 5 MET A 102 LEU A 107 -1 O CYS A 105 N VAL A 86 SHEET 3 A 5 CYS A 159 PHE A 163 1 O GLY A 162 N LEU A 104 SHEET 4 A 5 ILE A 143 ASP A 148 -1 N LEU A 145 O CYS A 159 SHEET 5 A 5 PHE A 130 PHE A 134 -1 N LYS A 133 O LYS A 144 SHEET 1 B 2 ILE A 244 VAL A 245 0 SHEET 2 B 2 PHE A 248 ASP A 249 -1 O PHE A 248 N VAL A 245 SHEET 1 C 5 GLU B 84 PHE B 88 0 SHEET 2 C 5 MET B 102 LEU B 107 -1 O LEU B 107 N GLU B 84 SHEET 3 C 5 CYS B 159 PHE B 163 1 O ALA B 160 N LEU B 104 SHEET 4 C 5 ILE B 142 SER B 147 -1 N LEU B 145 O CYS B 159 SHEET 5 C 5 GLU B 131 LEU B 135 -1 N LEU B 135 O ILE B 142 SHEET 1 D 2 ILE B 244 VAL B 245 0 SHEET 2 D 2 PHE B 248 ASP B 249 -1 O PHE B 248 N VAL B 245 SHEET 1 E 2 VAL B 289 VAL B 290 0 SHEET 2 E 2 ALA B 327 ILE B 328 1 O ALA B 327 N VAL B 290 LINK MG MG A 401 O HOH A 619 1555 1555 2.84 LINK MG MG A 401 O HOH A 680 1555 1555 2.07 LINK MG MG B 401 O HOH B 644 1555 1555 2.73 CISPEP 1 LYS A 227 PRO A 228 0 -4.50 CISPEP 2 LYS B 227 PRO B 228 0 -6.20 CISPEP 3 TYR B 366 PRO B 367 0 0.53 SITE 1 AC1 3 HOH A 517 HOH A 619 HOH A 680 SITE 1 AC2 2 THR A 45 HOH A 573 SITE 1 AC3 2 LEU B 74 HOH B 644 SITE 1 AC4 3 LYS B 193 HOH B 593 U H 59 SITE 1 AC5 3 LYS A 193 HOH A 609 U D 59 CRYST1 54.020 77.090 81.830 90.00 90.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018512 0.000000 0.000229 0.00000 SCALE2 0.000000 0.012972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012221 0.00000