HEADER PROTEIN BINDING 14-NOV-13 4NLA TITLE STRUCTURE OF THE CENTRAL NEAT DOMAIN, N2, OF THE LISTERIAL HBP2 TITLE 2 PROTEIN, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 183-303; COMPND 5 SYNONYM: P64 PROTEIN, SURFACE VIRULENCE-ASSOCIATED PROTEIN A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: BN418_2635, LMO2185, M639_06195; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-SUMO KEYWDS HEME, NEAT DOMAIN, LISTERIA, HEMOGLOBIN, N2, HBP, HBP2, HEME-BINDING KEYWDS 2 PROTEIN, PROTEIN BINDING, HEME BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.R.MALMIRCHEGINI,M.R.SAWAYA,R.T.CLUBB REVDAT 3 20-SEP-23 4NLA 1 REMARK SEQADV REVDAT 2 31-DEC-14 4NLA 1 JRNL REVDAT 1 22-OCT-14 4NLA 0 JRNL AUTH G.R.MALMIRCHEGINI,M.SJODT,S.SHNITKIND,M.R.SAWAYA,J.ROSINSKI, JRNL AUTH 2 S.M.NEWTON,P.E.KLEBBA,R.T.CLUBB JRNL TITL NOVEL MECHANISM OF HEMIN CAPTURE BY HBP2, THE JRNL TITL 2 HEMOGLOBIN-BINDING HEMOPHORE FROM LISTERIA MONOCYTOGENES. JRNL REF J.BIOL.CHEM. V. 289 34886 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25315777 JRNL DOI 10.1074/JBC.M114.583013 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 3370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 929 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3616 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 837 REMARK 3 BIN R VALUE (WORKING SET) : 0.3553 REMARK 3 BIN FREE R VALUE : 0.4147 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 92 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 947 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 109.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.968 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.457 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 968 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1315 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 331 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 136 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 968 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 129 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1000 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.3047 37.9763 28.8459 REMARK 3 T TENSOR REMARK 3 T11: -0.2241 T22: -0.2330 REMARK 3 T33: 0.0790 T12: 0.0180 REMARK 3 T13: 0.0340 T23: -0.2749 REMARK 3 L TENSOR REMARK 3 L11: 10.7995 L22: 6.9195 REMARK 3 L33: 5.4550 L12: 4.8158 REMARK 3 L13: 2.1070 L23: 2.8230 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: -0.1677 S13: 1.0885 REMARK 3 S21: 0.6502 S22: -0.7062 S23: 1.0200 REMARK 3 S31: 0.0405 S32: -0.7576 S33: 0.5886 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950, 0.9686, 1.5418 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS. BENT CYLINDERS, STRIPES REMARK 200 OF PT, RH AND CLEAR. REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.2 REMARK 200 STARTING MODEL: PDB ENTRY 3SZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 200 MM POTASSIUM SODIUM TARTRATE TETRAHYDRATE, 2.0 M REMARK 280 AMMONIUM SULFATE, PH 5.4, VAPOR DIFFUSION, TEMPERATURE 298K, REMARK 280 EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 44.65000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 44.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT THE BIOLOGICAL UNIT IS NOT KNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 303 O CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 183 89.78 -65.57 REMARK 500 ASP A 201 38.20 -80.97 REMARK 500 TYR A 289 -23.02 -157.01 REMARK 500 ASP A 300 -134.35 -88.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MYP RELATED DB: PDB REMARK 900 SAME PROTEIN, BUT WITH HEME BOUND DBREF 4NLA A 183 303 UNP Q9KGV9 Q9KGV9_LISMN 183 303 SEQADV 4NLA SER A 182 UNP Q9KGV9 EXPRESSION TAG SEQRES 1 A 122 SER THR LEU SER ASP GLY ILE TYR THR ILE PRO PHE VAL SEQRES 2 A 122 ALA LYS LYS ALA ASN ASP ASP SER ASN SER SER MET GLN SEQRES 3 A 122 ASN TYR PHE ASN ASN PRO ALA TRP LEU LYS VAL LYS ASN SEQRES 4 A 122 GLY LYS LYS MET VAL ALA MET THR VAL ASN ASP ASN LYS SEQRES 5 A 122 THR VAL THR ALA LEU LYS THR THR LEU ALA GLY THR LEU SEQRES 6 A 122 GLN ASP VAL LYS VAL VAL SER GLU ASP LYS ASP ALA ASN SEQRES 7 A 122 THR ARG ILE VAL GLU PHE GLU VAL GLU ASP LEU ASN GLN SEQRES 8 A 122 PRO LEU ALA ALA HIS VAL ASN TYR GLU ALA PRO PHE ASN SEQRES 9 A 122 GLY SER VAL TYR LYS GLY GLN ALA ASP PHE ARG TYR VAL SEQRES 10 A 122 PHE ASP THR ALA LYS HET SO4 A 401 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *9(H2 O) HELIX 1 1 SER A 204 PHE A 210 5 7 SHEET 1 A 5 GLY A 187 ILE A 191 0 SHEET 2 A 5 ALA A 214 LYS A 219 -1 O ALA A 214 N ILE A 191 SHEET 3 A 5 LYS A 222 VAL A 229 -1 O ALA A 226 N TRP A 215 SHEET 4 A 5 THR A 260 GLU A 266 -1 O ARG A 261 N VAL A 229 SHEET 5 A 5 LYS A 250 ASP A 255 -1 N SER A 253 O ILE A 262 SHEET 1 B 5 PHE A 193 LYS A 197 0 SHEET 2 B 5 LYS A 290 PHE A 299 -1 O ARG A 296 N LYS A 196 SHEET 3 B 5 LEU A 274 GLU A 281 -1 N LEU A 274 O TYR A 297 SHEET 4 B 5 VAL A 235 LEU A 242 -1 N ALA A 237 O ASN A 279 SHEET 5 B 5 THR A 245 ASP A 248 -1 O THR A 245 N LEU A 242 CISPEP 1 ASN A 212 PRO A 213 0 -0.97 SITE 1 AC1 3 LYS A 197 SER A 204 SER A 205 CRYST1 89.300 89.300 89.300 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011198 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011198 0.00000