HEADER TRANSCRIPTION 16-NOV-13 4NN2 TITLE PROTEIN CRYSTAL STRUCTURE OF HUMAN BORJESON-FORSSMAN-LEHMANN SYNDROME TITLE 2 ASSOCIATED PROTEIN PHF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 208-333; COMPND 5 SYNONYM: PHD-LIKE ZINC FINGER PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF6, KIAA1823; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1 KEYWDS ZINC FINGER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.LIU,F.LI,J.ZHANG,Y.MEI,J.WU,Y.SHI REVDAT 3 28-FEB-24 4NN2 1 REMARK SEQADV LINK REVDAT 2 03-DEC-14 4NN2 1 AUTHOR REVDAT 1 26-FEB-14 4NN2 0 JRNL AUTH Z.LIU,F.LI,J.ZHANG,Y.MEI,J.WU,Y.SHI JRNL TITL CRYSTAL STRUCTURE OF THE SECOND EXTENDED PHD DOMAIN OF HUMAN JRNL TITL 2 PHF6 PROTEIN JRNL REF J.BIOL.CHEM. 2014 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 52630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3681 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.877 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1938 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1871 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2583 ; 1.128 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4325 ; 0.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 239 ; 6.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;28.396 ;23.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;10.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;10.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2150 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 965 ; 0.744 ; 1.215 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 964 ; 0.741 ; 1.214 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 1.275 ; 1.814 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4NN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.472 REMARK 200 RESOLUTION RANGE LOW (A) : 89.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : 0.50500 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMINIUM ACETATE, 0.1M TRI-SODIUM REMARK 280 CITRATE DEHYDRATE, 30% (W/V) PEG4000, PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 ASN A 332 REMARK 465 ASP A 333 REMARK 465 GLY B 205 REMARK 465 PRO B 206 REMARK 465 SER B 207 REMARK 465 THR B 208 REMARK 465 SER B 256 REMARK 465 ARG B 257 REMARK 465 ALA B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 331 REMARK 465 ASN B 332 REMARK 465 ASP B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 208 OG1 CG2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 212 SG REMARK 620 2 CYS A 215 SG 108.6 REMARK 620 3 HIS A 239 ND1 103.8 95.5 REMARK 620 4 CYS A 242 SG 113.2 119.2 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 280 SG REMARK 620 2 CYS A 283 SG 109.8 REMARK 620 3 HIS A 302 ND1 103.5 97.2 REMARK 620 4 CYS A 305 SG 111.0 118.8 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 292 SG REMARK 620 2 CYS A 297 SG 111.8 REMARK 620 3 CYS A 326 SG 117.5 107.7 REMARK 620 4 HIS A 329 ND1 110.1 105.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 212 SG REMARK 620 2 CYS B 215 SG 108.6 REMARK 620 3 HIS B 239 ND1 103.2 94.5 REMARK 620 4 CYS B 242 SG 113.5 118.8 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 280 SG REMARK 620 2 CYS B 283 SG 109.5 REMARK 620 3 HIS B 302 ND1 104.0 98.7 REMARK 620 4 CYS B 305 SG 109.7 119.2 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 292 SG REMARK 620 2 CYS B 297 SG 110.6 REMARK 620 3 CYS B 326 SG 117.1 109.6 REMARK 620 4 HIS B 329 ND1 109.8 107.6 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 DBREF 4NN2 A 208 333 UNP Q8IWS0 PHF6_HUMAN 208 333 DBREF 4NN2 B 208 333 UNP Q8IWS0 PHF6_HUMAN 208 333 SEQADV 4NN2 GLY A 205 UNP Q8IWS0 EXPRESSION TAG SEQADV 4NN2 PRO A 206 UNP Q8IWS0 EXPRESSION TAG SEQADV 4NN2 SER A 207 UNP Q8IWS0 EXPRESSION TAG SEQADV 4NN2 GLY B 205 UNP Q8IWS0 EXPRESSION TAG SEQADV 4NN2 PRO B 206 UNP Q8IWS0 EXPRESSION TAG SEQADV 4NN2 SER B 207 UNP Q8IWS0 EXPRESSION TAG SEQRES 1 A 129 GLY PRO SER THR ARG PRO LYS CYS GLY PHE CYS HIS VAL SEQRES 2 A 129 GLY GLU GLU GLU ASN GLU ALA ARG GLY LYS LEU HIS ILE SEQRES 3 A 129 PHE ASN ALA LYS LYS ALA ALA ALA HIS TYR LYS CYS MET SEQRES 4 A 129 LEU PHE SER SER GLY THR VAL GLN LEU THR THR THR SER SEQRES 5 A 129 ARG ALA GLU PHE GLY ASP PHE ASP ILE LYS THR VAL LEU SEQRES 6 A 129 GLN GLU ILE LYS ARG GLY LYS ARG MET LYS CYS THR LEU SEQRES 7 A 129 CYS SER GLN PRO GLY ALA THR ILE GLY CYS GLU ILE LYS SEQRES 8 A 129 ALA CYS VAL LYS THR TYR HIS TYR HIS CYS GLY VAL GLN SEQRES 9 A 129 ASP LYS ALA LYS TYR ILE GLU ASN MET SER ARG GLY ILE SEQRES 10 A 129 TYR LYS LEU TYR CYS LYS ASN HIS SER GLY ASN ASP SEQRES 1 B 129 GLY PRO SER THR ARG PRO LYS CYS GLY PHE CYS HIS VAL SEQRES 2 B 129 GLY GLU GLU GLU ASN GLU ALA ARG GLY LYS LEU HIS ILE SEQRES 3 B 129 PHE ASN ALA LYS LYS ALA ALA ALA HIS TYR LYS CYS MET SEQRES 4 B 129 LEU PHE SER SER GLY THR VAL GLN LEU THR THR THR SER SEQRES 5 B 129 ARG ALA GLU PHE GLY ASP PHE ASP ILE LYS THR VAL LEU SEQRES 6 B 129 GLN GLU ILE LYS ARG GLY LYS ARG MET LYS CYS THR LEU SEQRES 7 B 129 CYS SER GLN PRO GLY ALA THR ILE GLY CYS GLU ILE LYS SEQRES 8 B 129 ALA CYS VAL LYS THR TYR HIS TYR HIS CYS GLY VAL GLN SEQRES 9 B 129 ASP LYS ALA LYS TYR ILE GLU ASN MET SER ARG GLY ILE SEQRES 10 B 129 TYR LYS LEU TYR CYS LYS ASN HIS SER GLY ASN ASP HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET GOL B 404 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 6(ZN 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *264(H2 O) HELIX 1 1 GLY A 218 GLU A 220 5 3 HELIX 2 2 GLU A 221 GLY A 226 1 6 HELIX 3 3 TYR A 240 PHE A 245 1 6 HELIX 4 4 ASP A 264 LYS A 276 1 13 HELIX 5 5 HIS A 302 ASP A 309 1 8 HELIX 6 6 CYS A 326 SER A 330 5 5 HELIX 7 7 GLY B 218 GLU B 220 5 3 HELIX 8 8 GLU B 221 GLY B 226 1 6 HELIX 9 9 TYR B 240 SER B 246 1 7 HELIX 10 10 ASP B 264 LYS B 276 1 13 HELIX 11 11 HIS B 302 ASP B 309 1 8 HELIX 12 12 MET B 317 GLY B 320 5 4 SHEET 1 A 2 LEU A 228 ILE A 230 0 SHEET 2 A 2 ALA A 237 HIS A 239 -1 O ALA A 238 N HIS A 229 SHEET 1 B 2 ILE A 290 GLY A 291 0 SHEET 2 B 2 THR A 300 TYR A 301 -1 O TYR A 301 N ILE A 290 SHEET 1 C 2 LYS A 312 ASN A 316 0 SHEET 2 C 2 ILE A 321 TYR A 325 -1 O TYR A 325 N LYS A 312 SHEET 1 D 2 LEU B 228 ILE B 230 0 SHEET 2 D 2 ALA B 237 HIS B 239 -1 O ALA B 238 N HIS B 229 SHEET 1 E 2 ILE B 290 GLY B 291 0 SHEET 2 E 2 THR B 300 TYR B 301 -1 O TYR B 301 N ILE B 290 SHEET 1 F 2 LYS B 312 ASN B 316 0 SHEET 2 F 2 ILE B 321 TYR B 325 -1 O TYR B 325 N LYS B 312 LINK SG CYS A 212 ZN ZN A 401 1555 1555 2.41 LINK SG CYS A 215 ZN ZN A 401 1555 1555 2.31 LINK ND1 HIS A 239 ZN ZN A 401 1555 1555 2.17 LINK SG CYS A 242 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 280 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 283 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 292 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 297 ZN ZN A 403 1555 1555 2.34 LINK ND1 HIS A 302 ZN ZN A 402 1555 1555 2.17 LINK SG CYS A 305 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 326 ZN ZN A 403 1555 1555 2.33 LINK ND1 HIS A 329 ZN ZN A 403 1555 1555 2.11 LINK SG CYS B 212 ZN ZN B 401 1555 1555 2.36 LINK SG CYS B 215 ZN ZN B 401 1555 1555 2.33 LINK ND1 HIS B 239 ZN ZN B 401 1555 1555 2.15 LINK SG CYS B 242 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 280 ZN ZN B 402 1555 1555 2.37 LINK SG CYS B 283 ZN ZN B 402 1555 1555 2.32 LINK SG CYS B 292 ZN ZN B 403 1555 1555 2.31 LINK SG CYS B 297 ZN ZN B 403 1555 1555 2.30 LINK ND1 HIS B 302 ZN ZN B 402 1555 1555 2.17 LINK SG CYS B 305 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 326 ZN ZN B 403 1555 1555 2.31 LINK ND1 HIS B 329 ZN ZN B 403 1555 1555 2.11 SITE 1 AC1 4 CYS A 212 CYS A 215 HIS A 239 CYS A 242 SITE 1 AC2 4 CYS A 280 CYS A 283 HIS A 302 CYS A 305 SITE 1 AC3 4 CYS A 292 CYS A 297 CYS A 326 HIS A 329 SITE 1 AC4 4 CYS B 212 CYS B 215 HIS B 239 CYS B 242 SITE 1 AC5 4 CYS B 280 CYS B 283 HIS B 302 CYS B 305 SITE 1 AC6 4 CYS B 292 CYS B 297 CYS B 326 HIS B 329 SITE 1 AC7 9 HIS A 229 ILE A 230 PHE A 231 ILE A 265 SITE 2 AC7 9 HOH A 511 PHE B 260 GLY B 261 ASP B 262 SITE 3 AC7 9 PHE B 263 CRYST1 102.780 102.780 51.250 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009730 0.005617 0.000000 0.00000 SCALE2 0.000000 0.011235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019512 0.00000