HEADER RNA BINDING PROTEIN 20-NOV-13 4NOY TITLE CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES HFQ F43W COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: D, A, B, C, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: HFQ, LMHCC_1277; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LSM/SM PROTEINS, RNA CHAPERONE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.T.CANTY,A.R.KOVACH,R.G.BRENNAN REVDAT 4 20-SEP-23 4NOY 1 REMARK SEQADV REVDAT 3 22-NOV-17 4NOY 1 REMARK REVDAT 2 01-OCT-14 4NOY 1 JRNL REVDAT 1 10-SEP-14 4NOY 0 JRNL AUTH A.R.KOVACH,K.E.HOFF,J.T.CANTY,J.ORANS,R.G.BRENNAN JRNL TITL RECOGNITION OF U-RICH RNA BY HFQ FROM THE GRAM-POSITIVE JRNL TITL 2 PATHOGEN LISTERIA MONOCYTOGENES. JRNL REF RNA V. 20 1548 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 25150227 JRNL DOI 10.1261/RNA.044032.113 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 11525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4296 - 4.4357 0.98 2875 145 0.2325 0.2577 REMARK 3 2 4.4357 - 3.5213 0.99 2757 149 0.2063 0.2881 REMARK 3 3 3.5213 - 3.0763 0.99 2752 127 0.2348 0.2972 REMARK 3 4 3.0763 - 2.7951 0.94 2593 127 0.2502 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3513 REMARK 3 ANGLE : 1.464 4731 REMARK 3 CHIRALITY : 0.086 538 REMARK 3 PLANARITY : 0.006 605 REMARK 3 DIHEDRAL : 17.747 1260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2036 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 2036 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 2036 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 2036 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 2036 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOM N PHE A 57 IS MODELED WITH B = 0. REMARK 4 REMARK 4 4NOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.795 REMARK 200 RESOLUTION RANGE LOW (A) : 66.967 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% 1,2-PROPANEDIOL, 100 MM HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.97850 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.25700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.97850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.25700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 191.87100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 191.87100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LEU D 72 REMARK 465 ASN D 73 REMARK 465 PRO D 74 REMARK 465 ASP D 75 REMARK 465 ALA D 76 REMARK 465 GLU D 77 REMARK 465 PRO A 74 REMARK 465 ASP A 75 REMARK 465 ALA A 76 REMARK 465 GLU A 77 REMARK 465 MET B 1 REMARK 465 ASN B 73 REMARK 465 PRO B 74 REMARK 465 ASP B 75 REMARK 465 ALA B 76 REMARK 465 GLU B 77 REMARK 465 MET C 1 REMARK 465 ASP C 75 REMARK 465 ALA C 76 REMARK 465 GLU C 77 REMARK 465 ASN E 73 REMARK 465 PRO E 74 REMARK 465 ASP E 75 REMARK 465 ALA E 76 REMARK 465 GLU E 77 REMARK 465 ALA F 76 REMARK 465 GLU F 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE D 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 LYS D 68 CB CG CD CE NZ REMARK 470 PHE A 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 ASN A 73 CB CG OD1 ND2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLU C 19 CG CD OE1 OE2 REMARK 470 PHE C 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 2 CG CD CE NZ REMARK 470 LEU E 22 CG CD1 CD2 REMARK 470 ARG E 34 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 18 CG CD CE NZ REMARK 470 GLU F 50 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR E 11 O ALA E 71 2.07 REMARK 500 NZ LYS C 52 O PRO F 66 2.11 REMARK 500 OD1 ASN E 14 NH1 ARG E 17 2.11 REMARK 500 OD1 ASN C 14 NH1 ARG C 17 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER C 65 OE1 GLN E 54 2855 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 2 CB - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 GLN B 3 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 LEU B 72 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 GLN C 6 N - CA - CB ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN D 6 22.75 -150.61 REMARK 500 ASP D 41 -154.48 -121.45 REMARK 500 SER D 62 -60.20 -95.92 REMARK 500 GLN A 6 23.11 -151.01 REMARK 500 ASP A 41 -153.54 -123.02 REMARK 500 LEU A 72 -159.06 -98.28 REMARK 500 GLN B 3 47.95 70.69 REMARK 500 ASP B 41 -156.11 -121.82 REMARK 500 GLN C 3 -88.64 151.01 REMARK 500 GLN C 6 11.11 52.27 REMARK 500 ASP C 41 -153.69 -123.22 REMARK 500 LYS E 2 -69.09 -148.12 REMARK 500 GLN E 6 23.96 -155.58 REMARK 500 ASP E 41 -154.50 -123.21 REMARK 500 GLN F 6 32.18 -144.23 REMARK 500 ASP F 41 -155.37 -120.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 3 GLY B 4 -148.94 REMARK 500 MET E 1 LYS E 2 33.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO F 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NL2 RELATED DB: PDB REMARK 900 RELATED ID: 4NL3 RELATED DB: PDB DBREF 4NOY D 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NOY A 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NOY B 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NOY C 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NOY E 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NOY F 1 77 UNP B8DG33 B8DG33_LISMH 1 77 SEQADV 4NOY TRP D 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQADV 4NOY TRP A 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQADV 4NOY TRP B 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQADV 4NOY TRP C 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQADV 4NOY TRP E 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQADV 4NOY TRP F 43 UNP B8DG33 PHE 43 ENGINEERED MUTATION SEQRES 1 D 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 D 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 D 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 D 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 D 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 D 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 A 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 A 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 A 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 A 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 A 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 A 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 B 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 B 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 B 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 B 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 B 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 B 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 C 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 C 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 C 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 C 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 C 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 C 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 E 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 E 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 E 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 E 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 E 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 E 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 F 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 F 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 F 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 F 77 PHE ASP ASN TRP THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 F 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 F 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU HET PGO D 101 5 HET PGO D 102 5 HET PGO A 101 5 HET PGO A 102 5 HET PGO B 101 5 HET PGO B 102 5 HET PGO F 101 5 HET PGO F 102 5 HETNAM PGO S-1,2-PROPANEDIOL FORMUL 7 PGO 8(C3 H8 O2) FORMUL 15 HOH *30(H2 O) HELIX 1 1 GLN D 6 LYS D 20 1 15 HELIX 2 2 GLN A 6 LYS A 20 1 15 HELIX 3 3 GLN B 6 GLU B 19 1 14 HELIX 4 4 GLY C 7 GLU C 19 1 13 HELIX 5 5 GLN E 6 LYS E 20 1 15 HELIX 6 6 GLN F 6 GLU F 19 1 14 SHEET 1 A15 LYS D 52 PHE D 57 0 SHEET 2 A15 THR D 44 VAL D 49 -1 N LEU D 47 O GLN D 54 SHEET 3 A15 GLN D 32 PHE D 40 -1 N VAL D 38 O LEU D 46 SHEET 4 A15 ALA D 23 LEU D 27 -1 N VAL D 25 O LEU D 33 SHEET 5 A15 ILE D 61 PRO D 66 -1 O SER D 62 N PHE D 26 SHEET 6 A15 LYS A 52 PHE A 57 -1 O PHE A 57 N SER D 62 SHEET 7 A15 THR A 44 VAL A 49 -1 N LEU A 47 O GLN A 54 SHEET 8 A15 GLN A 32 PHE A 40 -1 N VAL A 38 O LEU A 46 SHEET 9 A15 ALA A 23 LEU A 27 -1 N VAL A 25 O LEU A 33 SHEET 10 A15 ILE A 61 PRO A 66 -1 O SER A 62 N PHE A 26 SHEET 11 A15 LYS B 52 PHE B 57 -1 O PHE B 57 N SER A 62 SHEET 12 A15 THR B 44 VAL B 49 -1 N LEU B 47 O GLN B 54 SHEET 13 A15 GLN B 32 PHE B 40 -1 N VAL B 38 O LEU B 46 SHEET 14 A15 ALA B 23 LEU B 27 -1 N VAL B 25 O LEU B 33 SHEET 15 A15 ILE B 61 PRO B 66 -1 O SER B 62 N PHE B 26 SHEET 1 B15 ILE C 61 PRO C 66 0 SHEET 2 B15 LEU C 22 LEU C 27 -1 N THR C 24 O SER C 65 SHEET 3 B15 GLN C 32 PHE C 40 -1 O LEU C 33 N VAL C 25 SHEET 4 B15 THR C 44 VAL C 49 -1 O LEU C 46 N VAL C 38 SHEET 5 B15 LYS C 52 PHE C 57 -1 O LYS C 52 N VAL C 49 SHEET 6 B15 ILE F 61 PRO F 66 -1 O SER F 62 N PHE C 57 SHEET 7 B15 LEU F 22 LEU F 27 -1 N PHE F 26 O SER F 62 SHEET 8 B15 GLN F 32 PHE F 40 -1 O LEU F 33 N VAL F 25 SHEET 9 B15 THR F 44 VAL F 49 -1 O LEU F 46 N VAL F 38 SHEET 10 B15 LYS F 52 PHE F 57 -1 O LYS F 52 N VAL F 49 SHEET 11 B15 ILE E 61 PRO E 66 -1 N PHE E 64 O LEU F 55 SHEET 12 B15 ALA E 23 LEU E 27 -1 N THR E 24 O SER E 65 SHEET 13 B15 GLN E 32 PHE E 40 -1 O LEU E 33 N VAL E 25 SHEET 14 B15 THR E 44 VAL E 49 -1 O LEU E 46 N SER E 39 SHEET 15 B15 LYS E 52 PHE E 57 -1 O GLN E 54 N LEU E 47 CISPEP 1 GLY C 5 GLN C 6 0 -1.89 CISPEP 2 GLN E 3 GLY E 4 0 13.54 SITE 1 AC1 4 TRP A 43 GLN D 6 GLN D 9 ASN D 42 SITE 1 AC2 3 ARG D 17 SER D 39 PHE D 40 SITE 1 AC3 5 GLN A 6 GLN A 9 ASN A 42 LYS A 58 SITE 2 AC3 5 TRP B 43 SITE 1 AC4 4 ASN A 14 ARG A 17 SER A 39 PHE A 40 SITE 1 AC5 3 ARG B 17 SER B 39 PHE B 40 SITE 1 AC6 3 GLN B 6 GLN B 9 ASN B 42 SITE 1 AC7 5 TRP C 43 GLN F 6 GLN F 9 ASN F 42 SITE 2 AC7 5 HOH F 201 SITE 1 AC8 4 ASN F 14 ARG F 17 SER F 39 PHE F 40 CRYST1 63.957 66.967 106.514 90.00 90.00 90.00 P 21 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009388 0.00000