data_4NP3 # _entry.id 4NP3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NP3 RCSB RCSB083478 WWPDB D_1000083478 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4MRD . unspecified PDB 4MRE . unspecified PDB 4MRF . unspecified PDB 4MRG . unspecified PDB 4MRH . unspecified PDB 4NP2 . unspecified # _pdbx_database_status.entry_id 4NP3 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-11-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, L.K.' 1 'Finzel, B.' 2 # _citation.id primary _citation.title ;Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 57 _citation.page_first 2714 _citation.page_last 2725 _citation.year 2014 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24606063 _citation.pdbx_database_id_DOI 10.1021/jm5000276 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Liu, L.K.' 1 primary 'Finzel, B.C.' 2 # _cell.length_a 31.000 _cell.length_b 82.000 _cell.length_c 32.000 _cell.angle_alpha 90.000 _cell.angle_beta 118.000 _cell.angle_gamma 90.000 _cell.entry_id 4NP3 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4NP3 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD44 antigen' 16724.604 1 ? ? 'HYALURONAN BINDING DOMAIN, RESIDUES 23-174' ? 2 non-polymer syn '2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine' 242.320 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 4 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Extracellular matrix receptor III, ECMR-III, GP90 lymphocyte homing/adhesion receptor, HUTCH-I, Hermes antigen, Hyaluronate receptor, Lymphocyte antigen 24, Ly-24, Phagocytic glycoprotein 1, PGP-1, Phagocytic glycoprotein I, PGP-I ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAA NHTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _entity_poly.pdbx_seq_one_letter_code_can ;NQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAA NHTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 GLN n 1 3 ILE n 1 4 ASP n 1 5 LEU n 1 6 ASN n 1 7 VAL n 1 8 THR n 1 9 CYS n 1 10 ARG n 1 11 TYR n 1 12 ALA n 1 13 GLY n 1 14 VAL n 1 15 PHE n 1 16 HIS n 1 17 VAL n 1 18 GLU n 1 19 LYS n 1 20 ASN n 1 21 GLY n 1 22 ARG n 1 23 TYR n 1 24 SER n 1 25 ILE n 1 26 SER n 1 27 ARG n 1 28 THR n 1 29 GLU n 1 30 ALA n 1 31 ALA n 1 32 ASP n 1 33 LEU n 1 34 CYS n 1 35 GLN n 1 36 ALA n 1 37 PHE n 1 38 ASN n 1 39 SER n 1 40 THR n 1 41 LEU n 1 42 PRO n 1 43 THR n 1 44 MET n 1 45 ASP n 1 46 GLN n 1 47 MET n 1 48 LYS n 1 49 LEU n 1 50 ALA n 1 51 LEU n 1 52 SER n 1 53 LYS n 1 54 GLY n 1 55 PHE n 1 56 GLU n 1 57 THR n 1 58 CYS n 1 59 ARG n 1 60 TYR n 1 61 GLY n 1 62 PHE n 1 63 ILE n 1 64 GLU n 1 65 GLY n 1 66 ASN n 1 67 VAL n 1 68 VAL n 1 69 ILE n 1 70 PRO n 1 71 ARG n 1 72 ILE n 1 73 HIS n 1 74 PRO n 1 75 ASN n 1 76 ALA n 1 77 ILE n 1 78 CYS n 1 79 ALA n 1 80 ALA n 1 81 ASN n 1 82 HIS n 1 83 THR n 1 84 GLY n 1 85 VAL n 1 86 TYR n 1 87 ILE n 1 88 LEU n 1 89 VAL n 1 90 THR n 1 91 SER n 1 92 ASN n 1 93 THR n 1 94 SER n 1 95 HIS n 1 96 TYR n 1 97 ASP n 1 98 THR n 1 99 TYR n 1 100 CYS n 1 101 PHE n 1 102 ASN n 1 103 ALA n 1 104 SER n 1 105 ALA n 1 106 PRO n 1 107 PRO n 1 108 GLU n 1 109 GLU n 1 110 ASP n 1 111 CYS n 1 112 THR n 1 113 SER n 1 114 VAL n 1 115 THR n 1 116 ASP n 1 117 LEU n 1 118 PRO n 1 119 ASN n 1 120 SER n 1 121 PHE n 1 122 ASP n 1 123 GLY n 1 124 PRO n 1 125 VAL n 1 126 THR n 1 127 ILE n 1 128 THR n 1 129 ILE n 1 130 VAL n 1 131 ASN n 1 132 ARG n 1 133 ASP n 1 134 GLY n 1 135 THR n 1 136 ARG n 1 137 TYR n 1 138 SER n 1 139 LYS n 1 140 LYS n 1 141 GLY n 1 142 GLU n 1 143 TYR n 1 144 ARG n 1 145 THR n 1 146 HIS n 1 147 GLN n 1 148 GLU n 1 149 ASP n 1 150 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Cd44, Cd44 Ly-24, Ly-24' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD44_MOUSE _struct_ref.pdbx_db_accession P15379 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAAN HTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NP3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15379 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 171 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 173 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4NP3 _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P15379 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 24 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2L2 non-polymer . '2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine' ? 'C14 H18 N4' 242.320 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NP3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'PEG MME 5000, MES, (NH4)2SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2013-07-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 # _reflns.entry_id 4NP3 _reflns.d_resolution_high 1.610 _reflns.d_resolution_low 41.000 _reflns.number_obs 18267 _reflns.pdbx_scaling_rejects 520 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.pdbx_chi_squared 1.160 _reflns.pdbx_redundancy 3.760 _reflns.percent_possible_obs 99.7 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 68726 _reflns.pdbx_Rsym_value 0.081 _reflns.B_iso_Wilson_estimate 22.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.610 1.670 ? 6581 ? 0.269 4.300 ? 1.470 3.660 ? 1790 100.000 1 1 1.670 1.730 ? 6883 ? 0.264 4.300 ? 1.430 3.710 ? 1847 99.900 2 1 1.730 1.810 ? 6892 ? 0.232 4.900 ? 1.340 3.740 ? 1835 99.900 3 1 1.810 1.910 ? 6812 ? 0.190 5.900 ? 1.270 3.740 ? 1807 99.900 4 1 1.910 2.030 ? 6927 ? 0.149 7.400 ? 1.210 3.770 ? 1825 99.700 5 1 2.030 2.190 ? 6964 ? 0.120 9.300 ? 1.070 3.770 ? 1827 99.700 6 1 2.190 2.400 ? 6939 ? 0.096 11.600 ? 0.970 3.800 ? 1803 99.300 7 1 2.400 2.750 ? 7099 ? 0.087 13.700 ? 0.980 3.810 ? 1846 99.600 8 1 2.750 3.470 ? 7055 ? 0.050 22.000 ? 0.920 3.820 ? 1826 99.600 9 1 3.470 40.920 ? 7094 ? 0.046 27.400 ? 0.990 3.790 ? 1861 99.700 10 1 # _refine.entry_id 4NP3 _refine.ls_d_res_high 1.610 _refine.ls_d_res_low 41.000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.46 _refine.ls_number_reflns_obs 18127 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1795 _refine.ls_R_factor_R_work 0.1771 _refine.ls_wR_factor_R_work 0.1952 _refine.ls_R_factor_R_free 0.2246 _refine.ls_wR_factor_R_free 0.2423 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 927 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 13.2889 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2400 _refine.aniso_B[2][2] 0.1600 _refine.aniso_B[3][3] -0.0100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.1000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9260 _refine.overall_SU_R_Cruickshank_DPI 0.1012 _refine.overall_SU_R_free 0.1053 _refine.pdbx_overall_ESU_R 0.1010 _refine.pdbx_overall_ESU_R_Free 0.1050 _refine.overall_SU_ML 0.0650 _refine.overall_SU_B 1.8410 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8417 _refine.B_iso_max 52.630 _refine.B_iso_min 5.290 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1171 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 1336 _refine_hist.d_res_high 1.610 _refine_hist.d_res_low 41.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1322 0.015 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1816 1.495 1.975 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 166 7.106 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 35.689 24.355 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 201 10.449 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 21.678 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 198 0.097 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1032 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 801 0.740 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1318 1.258 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 521 2.161 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 498 3.451 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6100 _refine_ls_shell.d_res_low 1.6520 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.9000 _refine_ls_shell.number_reflns_R_work 1206 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2170 _refine_ls_shell.R_factor_R_free 0.2920 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1263 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NP3 _struct.title 'Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule' _struct.pdbx_descriptor 'CD44 antigen' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NP3 _struct_keywords.text 'Link module, Cell surface receptor, Hyaluronan, non-glycosylated, Cell surface, Cell adhesion-inhibitor complex' _struct_keywords.pdbx_keywords 'Cell adhesion/inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? PHE A 37 ? SER A 49 PHE A 60 1 ? 12 HELX_P HELX_P2 2 THR A 43 ? LYS A 53 ? THR A 66 LYS A 76 1 ? 11 HELX_P HELX_P3 3 CYS A 78 ? HIS A 82 ? CYS A 101 HIS A 105 5 ? 5 HELX_P HELX_P4 4 HIS A 146 ? ILE A 150 ? HIS A 169 ILE A 173 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 111 SG ? ? A CYS 32 A CYS 134 1_555 ? ? ? ? ? ? ? 2.072 ? disulf2 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 57 A CYS 123 1_555 ? ? ? ? ? ? ? 2.066 ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 78 SG ? ? A CYS 81 A CYS 101 1_555 ? ? ? ? ? ? ? 2.092 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 84 ? ILE A 87 ? GLY A 107 ILE A 110 A 2 VAL A 67 ? ARG A 71 ? VAL A 90 ARG A 94 A 3 GLY A 61 ? PHE A 62 ? GLY A 84 PHE A 85 A 4 ASP A 97 ? PHE A 101 ? ASP A 120 PHE A 124 A 5 VAL A 14 ? LYS A 19 ? VAL A 37 LYS A 42 A 6 GLN A 2 ? VAL A 7 ? GLN A 25 VAL A 30 A 7 PHE A 121 ? ASN A 131 ? PHE A 144 ASN A 154 A 8 ARG A 136 ? GLU A 142 ? ARG A 159 GLU A 165 B 1 ARG A 10 ? TYR A 11 ? ARG A 33 TYR A 34 B 2 GLU A 109 ? ASP A 110 ? GLU A 132 ASP A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 84 ? O GLY A 107 N ARG A 71 ? N ARG A 94 A 2 3 O VAL A 68 ? O VAL A 91 N GLY A 61 ? N GLY A 84 A 3 4 N PHE A 62 ? N PHE A 85 O TYR A 99 ? O TYR A 122 A 4 5 O THR A 98 ? O THR A 121 N VAL A 17 ? N VAL A 40 A 5 6 O GLU A 18 ? O GLU A 41 N ASN A 6 ? N ASN A 29 A 6 7 N LEU A 5 ? N LEU A 28 O THR A 128 ? O THR A 151 A 7 8 N ILE A 127 ? N ILE A 150 O LYS A 139 ? O LYS A 162 B 1 2 N ARG A 10 ? N ARG A 33 O ASP A 110 ? O ASP A 133 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE 2L2 A 201' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE DMS A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MES A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 205' AC6 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ASN A 6 ? ASN A 29 . ? 1_555 ? 2 AC1 13 VAL A 7 ? VAL A 30 . ? 1_555 ? 3 AC1 13 GLU A 18 ? GLU A 41 . ? 1_555 ? 4 AC1 13 GLY A 21 ? GLY A 44 . ? 1_555 ? 5 AC1 13 ASP A 45 ? ASP A 68 . ? 1_655 ? 6 AC1 13 ARG A 59 ? ARG A 82 . ? 1_555 ? 7 AC1 13 VAL A 130 ? VAL A 153 . ? 1_555 ? 8 AC1 13 ASN A 131 ? ASN A 154 . ? 1_555 ? 9 AC1 13 ARG A 132 ? ARG A 155 . ? 1_555 ? 10 AC1 13 MES D . ? MES A 203 . ? 1_555 ? 11 AC1 13 SO4 E . ? SO4 A 204 . ? 1_555 ? 12 AC1 13 HOH H . ? HOH A 305 . ? 1_555 ? 13 AC1 13 HOH H . ? HOH A 309 . ? 1_555 ? 14 AC2 11 CYS A 9 ? CYS A 32 . ? 1_555 ? 15 AC2 11 GLY A 65 ? GLY A 88 . ? 1_554 ? 16 AC2 11 ASN A 66 ? ASN A 89 . ? 1_554 ? 17 AC2 11 CYS A 111 ? CYS A 134 . ? 1_555 ? 18 AC2 11 THR A 112 ? THR A 135 . ? 1_555 ? 19 AC2 11 SER A 113 ? SER A 136 . ? 1_555 ? 20 AC2 11 ARG A 132 ? ARG A 155 . ? 1_555 ? 21 AC2 11 ASP A 133 ? ASP A 156 . ? 1_555 ? 22 AC2 11 HOH H . ? HOH A 308 . ? 1_554 ? 23 AC2 11 HOH H . ? HOH A 341 . ? 1_555 ? 24 AC2 11 HOH H . ? HOH A 384 . ? 1_555 ? 25 AC3 6 ASP A 45 ? ASP A 68 . ? 1_655 ? 26 AC3 6 LYS A 48 ? LYS A 71 . ? 1_655 ? 27 AC3 6 LEU A 49 ? LEU A 72 . ? 1_655 ? 28 AC3 6 ARG A 132 ? ARG A 155 . ? 1_555 ? 29 AC3 6 2L2 B . ? 2L2 A 201 . ? 1_555 ? 30 AC3 6 HOH H . ? HOH A 391 . ? 1_555 ? 31 AC4 6 MET A 44 ? MET A 67 . ? 1_655 ? 32 AC4 6 ASP A 45 ? ASP A 68 . ? 1_655 ? 33 AC4 6 LYS A 48 ? LYS A 71 . ? 1_655 ? 34 AC4 6 2L2 B . ? 2L2 A 201 . ? 1_555 ? 35 AC4 6 HOH H . ? HOH A 332 . ? 1_655 ? 36 AC4 6 HOH H . ? HOH A 343 . ? 1_655 ? 37 AC5 5 ARG A 10 ? ARG A 33 . ? 1_555 ? 38 AC5 5 PHE A 15 ? PHE A 38 . ? 1_555 ? 39 AC5 5 PHE A 37 ? PHE A 60 . ? 1_555 ? 40 AC5 5 ASN A 102 ? ASN A 125 . ? 1_555 ? 41 AC5 5 VAL A 114 ? VAL A 137 . ? 1_555 ? 42 AC6 7 TYR A 86 ? TYR A 109 . ? 1_555 ? 43 AC6 7 ILE A 87 ? ILE A 110 . ? 1_555 ? 44 AC6 7 LEU A 88 ? LEU A 111 . ? 1_555 ? 45 AC6 7 VAL A 89 ? VAL A 112 . ? 1_555 ? 46 AC6 7 THR A 90 ? THR A 113 . ? 1_555 ? 47 AC6 7 HOH H . ? HOH A 380 . ? 1_555 ? 48 AC6 7 HOH H . ? HOH A 381 . ? 1_656 ? # _atom_sites.entry_id 4NP3 _atom_sites.fract_transf_matrix[1][1] 0.032258 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.017152 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012195 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035393 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 24 24 ASN ASN A . n A 1 2 GLN 2 25 25 GLN GLN A . n A 1 3 ILE 3 26 26 ILE ILE A . n A 1 4 ASP 4 27 27 ASP ASP A . n A 1 5 LEU 5 28 28 LEU LEU A . n A 1 6 ASN 6 29 29 ASN ASN A . n A 1 7 VAL 7 30 30 VAL VAL A . n A 1 8 THR 8 31 31 THR THR A . n A 1 9 CYS 9 32 32 CYS CYS A . n A 1 10 ARG 10 33 33 ARG ARG A . n A 1 11 TYR 11 34 34 TYR TYR A . n A 1 12 ALA 12 35 35 ALA ALA A . n A 1 13 GLY 13 36 36 GLY GLY A . n A 1 14 VAL 14 37 37 VAL VAL A . n A 1 15 PHE 15 38 38 PHE PHE A . n A 1 16 HIS 16 39 39 HIS HIS A . n A 1 17 VAL 17 40 40 VAL VAL A . n A 1 18 GLU 18 41 41 GLU GLU A . n A 1 19 LYS 19 42 42 LYS LYS A . n A 1 20 ASN 20 43 43 ASN ASN A . n A 1 21 GLY 21 44 44 GLY GLY A . n A 1 22 ARG 22 45 45 ARG ARG A . n A 1 23 TYR 23 46 46 TYR TYR A . n A 1 24 SER 24 47 47 SER SER A . n A 1 25 ILE 25 48 48 ILE ILE A . n A 1 26 SER 26 49 49 SER SER A . n A 1 27 ARG 27 50 50 ARG ARG A . n A 1 28 THR 28 51 51 THR THR A . n A 1 29 GLU 29 52 52 GLU GLU A . n A 1 30 ALA 30 53 53 ALA ALA A . n A 1 31 ALA 31 54 54 ALA ALA A . n A 1 32 ASP 32 55 55 ASP ASP A . n A 1 33 LEU 33 56 56 LEU LEU A . n A 1 34 CYS 34 57 57 CYS CYS A . n A 1 35 GLN 35 58 58 GLN GLN A . n A 1 36 ALA 36 59 59 ALA ALA A . n A 1 37 PHE 37 60 60 PHE PHE A . n A 1 38 ASN 38 61 61 ASN ASN A . n A 1 39 SER 39 62 62 SER SER A . n A 1 40 THR 40 63 63 THR THR A . n A 1 41 LEU 41 64 64 LEU LEU A . n A 1 42 PRO 42 65 65 PRO PRO A . n A 1 43 THR 43 66 66 THR THR A . n A 1 44 MET 44 67 67 MET MET A . n A 1 45 ASP 45 68 68 ASP ASP A . n A 1 46 GLN 46 69 69 GLN GLN A . n A 1 47 MET 47 70 70 MET MET A . n A 1 48 LYS 48 71 71 LYS LYS A . n A 1 49 LEU 49 72 72 LEU LEU A . n A 1 50 ALA 50 73 73 ALA ALA A . n A 1 51 LEU 51 74 74 LEU LEU A . n A 1 52 SER 52 75 75 SER SER A . n A 1 53 LYS 53 76 76 LYS LYS A . n A 1 54 GLY 54 77 77 GLY GLY A . n A 1 55 PHE 55 78 78 PHE PHE A . n A 1 56 GLU 56 79 79 GLU GLU A . n A 1 57 THR 57 80 80 THR THR A . n A 1 58 CYS 58 81 81 CYS CYS A . n A 1 59 ARG 59 82 82 ARG ARG A . n A 1 60 TYR 60 83 83 TYR TYR A . n A 1 61 GLY 61 84 84 GLY GLY A . n A 1 62 PHE 62 85 85 PHE PHE A . n A 1 63 ILE 63 86 86 ILE ILE A . n A 1 64 GLU 64 87 87 GLU GLU A . n A 1 65 GLY 65 88 88 GLY GLY A . n A 1 66 ASN 66 89 89 ASN ASN A . n A 1 67 VAL 67 90 90 VAL VAL A . n A 1 68 VAL 68 91 91 VAL VAL A . n A 1 69 ILE 69 92 92 ILE ILE A . n A 1 70 PRO 70 93 93 PRO PRO A . n A 1 71 ARG 71 94 94 ARG ARG A . n A 1 72 ILE 72 95 95 ILE ILE A . n A 1 73 HIS 73 96 96 HIS HIS A . n A 1 74 PRO 74 97 97 PRO PRO A . n A 1 75 ASN 75 98 98 ASN ASN A . n A 1 76 ALA 76 99 99 ALA ALA A . n A 1 77 ILE 77 100 100 ILE ILE A . n A 1 78 CYS 78 101 101 CYS CYS A . n A 1 79 ALA 79 102 102 ALA ALA A . n A 1 80 ALA 80 103 103 ALA ALA A . n A 1 81 ASN 81 104 104 ASN ASN A . n A 1 82 HIS 82 105 105 HIS HIS A . n A 1 83 THR 83 106 106 THR THR A . n A 1 84 GLY 84 107 107 GLY GLY A . n A 1 85 VAL 85 108 108 VAL VAL A . n A 1 86 TYR 86 109 109 TYR TYR A . n A 1 87 ILE 87 110 110 ILE ILE A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 VAL 89 112 112 VAL VAL A . n A 1 90 THR 90 113 113 THR THR A . n A 1 91 SER 91 114 114 SER SER A . n A 1 92 ASN 92 115 115 ASN ASN A . n A 1 93 THR 93 116 116 THR THR A . n A 1 94 SER 94 117 117 SER SER A . n A 1 95 HIS 95 118 118 HIS HIS A . n A 1 96 TYR 96 119 119 TYR TYR A . n A 1 97 ASP 97 120 120 ASP ASP A . n A 1 98 THR 98 121 121 THR THR A . n A 1 99 TYR 99 122 122 TYR TYR A . n A 1 100 CYS 100 123 123 CYS CYS A . n A 1 101 PHE 101 124 124 PHE PHE A . n A 1 102 ASN 102 125 125 ASN ASN A . n A 1 103 ALA 103 126 126 ALA ALA A . n A 1 104 SER 104 127 127 SER SER A . n A 1 105 ALA 105 128 128 ALA ALA A . n A 1 106 PRO 106 129 129 PRO PRO A . n A 1 107 PRO 107 130 130 PRO PRO A . n A 1 108 GLU 108 131 131 GLU GLU A . n A 1 109 GLU 109 132 132 GLU GLU A . n A 1 110 ASP 110 133 133 ASP ASP A . n A 1 111 CYS 111 134 134 CYS CYS A . n A 1 112 THR 112 135 135 THR THR A . n A 1 113 SER 113 136 136 SER SER A . n A 1 114 VAL 114 137 137 VAL VAL A . n A 1 115 THR 115 138 138 THR THR A . n A 1 116 ASP 116 139 139 ASP ASP A . n A 1 117 LEU 117 140 140 LEU LEU A . n A 1 118 PRO 118 141 141 PRO PRO A . n A 1 119 ASN 119 142 142 ASN ASN A . n A 1 120 SER 120 143 143 SER SER A . n A 1 121 PHE 121 144 144 PHE PHE A . n A 1 122 ASP 122 145 145 ASP ASP A . n A 1 123 GLY 123 146 146 GLY GLY A . n A 1 124 PRO 124 147 147 PRO PRO A . n A 1 125 VAL 125 148 148 VAL VAL A . n A 1 126 THR 126 149 149 THR THR A . n A 1 127 ILE 127 150 150 ILE ILE A . n A 1 128 THR 128 151 151 THR THR A . n A 1 129 ILE 129 152 152 ILE ILE A . n A 1 130 VAL 130 153 153 VAL VAL A . n A 1 131 ASN 131 154 154 ASN ASN A . n A 1 132 ARG 132 155 155 ARG ARG A . n A 1 133 ASP 133 156 156 ASP ASP A . n A 1 134 GLY 134 157 157 GLY GLY A . n A 1 135 THR 135 158 158 THR THR A . n A 1 136 ARG 136 159 159 ARG ARG A . n A 1 137 TYR 137 160 160 TYR TYR A . n A 1 138 SER 138 161 161 SER SER A . n A 1 139 LYS 139 162 162 LYS LYS A . n A 1 140 LYS 140 163 163 LYS LYS A . n A 1 141 GLY 141 164 164 GLY GLY A . n A 1 142 GLU 142 165 165 GLU GLU A . n A 1 143 TYR 143 166 166 TYR TYR A . n A 1 144 ARG 144 167 167 ARG ARG A . n A 1 145 THR 145 168 168 THR THR A . n A 1 146 HIS 146 169 169 HIS HIS A . n A 1 147 GLN 147 170 170 GLN GLN A . n A 1 148 GLU 148 171 171 GLU GLU A . n A 1 149 ASP 149 172 172 ASP ASP A . n A 1 150 ILE 150 173 173 ILE ILE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-04-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_phasing_MR.entry_id 4NP3 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 35.250 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 41.000 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 41.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 d*TREK 9.9.9.4L 'Jul 22 2011' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data scaling' http://www.rigaku.com/software/dtrek.html ? ? 2 d*TREK 9.9.9.4L 'Jul 22 2011' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data reduction' http://www.rigaku.com/software/dtrek.html ? ? 3 PHASER 2.1.4 'Wed Jun 16 18:01:28 2010' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CrystalClear . ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 159 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 159 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 159 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.46 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 32 ? ? -48.85 151.67 2 1 SER A 47 ? ? -162.06 12.21 3 1 TYR A 119 ? ? -133.09 -156.85 4 1 GLU A 131 ? ? -119.26 -133.40 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine' 2L2 3 'DIMETHYL SULFOXIDE' DMS 4 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 5 'SULFATE ION' SO4 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2L2 1 201 1 2L2 DRG A . C 3 DMS 1 202 1 DMS DMS A . D 4 MES 1 203 1 MES MES A . E 5 SO4 1 204 1 SO4 SO4 A . F 5 SO4 1 205 2 SO4 SO4 A . G 5 SO4 1 206 3 SO4 SO4 A . H 6 HOH 1 301 1 HOH HOH A . H 6 HOH 2 302 2 HOH HOH A . H 6 HOH 3 303 3 HOH HOH A . H 6 HOH 4 304 4 HOH HOH A . H 6 HOH 5 305 5 HOH HOH A . H 6 HOH 6 306 6 HOH HOH A . H 6 HOH 7 307 7 HOH HOH A . H 6 HOH 8 308 8 HOH HOH A . H 6 HOH 9 309 9 HOH HOH A . H 6 HOH 10 310 10 HOH HOH A . H 6 HOH 11 311 11 HOH HOH A . H 6 HOH 12 312 12 HOH HOH A . H 6 HOH 13 313 13 HOH HOH A . H 6 HOH 14 314 14 HOH HOH A . H 6 HOH 15 315 15 HOH HOH A . H 6 HOH 16 316 16 HOH HOH A . H 6 HOH 17 317 17 HOH HOH A . H 6 HOH 18 318 18 HOH HOH A . H 6 HOH 19 319 19 HOH HOH A . H 6 HOH 20 320 20 HOH HOH A . H 6 HOH 21 321 21 HOH HOH A . H 6 HOH 22 322 22 HOH HOH A . H 6 HOH 23 323 23 HOH HOH A . H 6 HOH 24 324 24 HOH HOH A . H 6 HOH 25 325 25 HOH HOH A . H 6 HOH 26 326 26 HOH HOH A . H 6 HOH 27 327 27 HOH HOH A . H 6 HOH 28 328 28 HOH HOH A . H 6 HOH 29 329 29 HOH HOH A . H 6 HOH 30 330 30 HOH HOH A . H 6 HOH 31 331 31 HOH HOH A . H 6 HOH 32 332 32 HOH HOH A . H 6 HOH 33 333 33 HOH HOH A . H 6 HOH 34 334 34 HOH HOH A . H 6 HOH 35 335 35 HOH HOH A . H 6 HOH 36 336 36 HOH HOH A . H 6 HOH 37 337 37 HOH HOH A . H 6 HOH 38 338 38 HOH HOH A . H 6 HOH 39 339 39 HOH HOH A . H 6 HOH 40 340 40 HOH HOH A . H 6 HOH 41 341 41 HOH HOH A . H 6 HOH 42 342 42 HOH HOH A . H 6 HOH 43 343 43 HOH HOH A . H 6 HOH 44 344 44 HOH HOH A . H 6 HOH 45 345 45 HOH HOH A . H 6 HOH 46 346 46 HOH HOH A . H 6 HOH 47 347 47 HOH HOH A . H 6 HOH 48 348 48 HOH HOH A . H 6 HOH 49 349 49 HOH HOH A . H 6 HOH 50 350 50 HOH HOH A . H 6 HOH 51 351 51 HOH HOH A . H 6 HOH 52 352 52 HOH HOH A . H 6 HOH 53 353 53 HOH HOH A . H 6 HOH 54 354 54 HOH HOH A . H 6 HOH 55 355 55 HOH HOH A . H 6 HOH 56 356 56 HOH HOH A . H 6 HOH 57 357 57 HOH HOH A . H 6 HOH 58 358 58 HOH HOH A . H 6 HOH 59 359 59 HOH HOH A . H 6 HOH 60 360 60 HOH HOH A . H 6 HOH 61 361 61 HOH HOH A . H 6 HOH 62 362 62 HOH HOH A . H 6 HOH 63 363 63 HOH HOH A . H 6 HOH 64 364 64 HOH HOH A . H 6 HOH 65 365 65 HOH HOH A . H 6 HOH 66 366 66 HOH HOH A . H 6 HOH 67 367 67 HOH HOH A . H 6 HOH 68 368 68 HOH HOH A . H 6 HOH 69 369 69 HOH HOH A . H 6 HOH 70 370 70 HOH HOH A . H 6 HOH 71 371 71 HOH HOH A . H 6 HOH 72 372 72 HOH HOH A . H 6 HOH 73 373 73 HOH HOH A . H 6 HOH 74 374 74 HOH HOH A . H 6 HOH 75 375 75 HOH HOH A . H 6 HOH 76 376 76 HOH HOH A . H 6 HOH 77 377 77 HOH HOH A . H 6 HOH 78 378 78 HOH HOH A . H 6 HOH 79 379 79 HOH HOH A . H 6 HOH 80 380 80 HOH HOH A . H 6 HOH 81 381 81 HOH HOH A . H 6 HOH 82 382 82 HOH HOH A . H 6 HOH 83 383 83 HOH HOH A . H 6 HOH 84 384 84 HOH HOH A . H 6 HOH 85 385 85 HOH HOH A . H 6 HOH 86 386 86 HOH HOH A . H 6 HOH 87 387 87 HOH HOH A . H 6 HOH 88 388 88 HOH HOH A . H 6 HOH 89 389 89 HOH HOH A . H 6 HOH 90 390 90 HOH HOH A . H 6 HOH 91 391 91 HOH HOH A . H 6 HOH 92 392 92 HOH HOH A . H 6 HOH 93 393 93 HOH HOH A . H 6 HOH 94 394 94 HOH HOH A . H 6 HOH 95 395 95 HOH HOH A . H 6 HOH 96 396 96 HOH HOH A . H 6 HOH 97 397 97 HOH HOH A . H 6 HOH 98 398 98 HOH HOH A . H 6 HOH 99 399 99 HOH HOH A . H 6 HOH 100 400 100 HOH HOH A . H 6 HOH 101 401 101 HOH HOH A . H 6 HOH 102 402 102 HOH HOH A . H 6 HOH 103 403 103 HOH HOH A . H 6 HOH 104 404 104 HOH HOH A . H 6 HOH 105 405 105 HOH HOH A . H 6 HOH 106 406 106 HOH HOH A . H 6 HOH 107 407 107 HOH HOH A . H 6 HOH 108 408 108 HOH HOH A . H 6 HOH 109 409 109 HOH HOH A . H 6 HOH 110 410 110 HOH HOH A . H 6 HOH 111 411 111 HOH HOH A . H 6 HOH 112 412 112 HOH HOH A . H 6 HOH 113 413 113 HOH HOH A . H 6 HOH 114 414 114 HOH HOH A . H 6 HOH 115 415 115 HOH HOH A . H 6 HOH 116 416 116 HOH HOH A . #