HEADER LYASE 23-NOV-13 4NQ1 TITLE LEGIONELLA PNEUMOPHILA DIHYDRODIPICOLINATE SYNTHASE WITH FIRST TITLE 2 SUBSTRATE PYRUVATE BOUND IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTPA SYNTHASE; COMPND 5 EC: 4.2.1.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 423212; SOURCE 4 STRAIN: 2300/99 ALCOY; SOURCE 5 GENE: DAPA, LPA_03319; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM BARREL, LYSINE BIOSYNTHESIS, DIHYDRODIPICOLINATE SYNTHESIS, KEYWDS 2 PYRUVATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SIDDIQUI,J.J.PAXMAN REVDAT 3 29-NOV-23 4NQ1 1 REMARK REVDAT 2 20-SEP-23 4NQ1 1 REMARK LINK REVDAT 1 01-JAN-14 4NQ1 0 JRNL AUTH T.SIDDIQUI,J.J.PAXMAN,C.DOGOVSKI,S.PANJIKAR,M.A.PERUGINI JRNL TITL LEGIONELLA PNEUMOPHILA DHDPS: THE FIRST CASE OF NON-LYSINE JRNL TITL 2 INHIBITION IN A GRAM-NEGATIVE PATHOGEN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 80488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 918 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5072 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6927 ; 2.189 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 687 ; 6.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.483 ;25.282 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 965 ;13.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3795 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3228 ; 1.148 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5271 ; 1.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1844 ; 3.602 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 5.807 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON MIRRORS (ADAPTIVE AND U- REMARK 200 BENT) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 36.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QZE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, REMARK 280 10%(W/V) PEG 8000, PH 10.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.72667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 193.45333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.09000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 241.81667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.36333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.72667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 193.45333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 241.81667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 145.09000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.36333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NE ARG A 14 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 487 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 90 O HOH A 714 1.73 REMARK 500 NE2 GLN B 123 O HOH B 579 1.89 REMARK 500 CE1 HIS B 22 O HOH B 844 2.06 REMARK 500 CE1 HIS A 22 O HOH A 816 2.13 REMARK 500 CG GLN B 123 O HOH B 531 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 13 CG - SD - CE ANGL. DEV. = 11.9 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 MET B 142 CG - SD - CE ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 230 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 106 -38.42 76.05 REMARK 500 TYR A 106 -26.52 68.75 REMARK 500 VAL A 134 67.45 -153.81 REMARK 500 ALA A 209 59.69 -112.52 REMARK 500 TYR B 106 -32.88 77.76 REMARK 500 TYR B 106 -35.15 71.00 REMARK 500 ALA B 209 55.78 -103.42 REMARK 500 ASP B 223 41.51 33.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 628 O REMARK 620 2 HOH A 631 O 87.0 REMARK 620 3 HOH A 825 O 87.7 88.5 REMARK 620 4 HOH A 826 O 89.6 176.6 91.8 REMARK 620 5 HOH A 827 O 88.9 87.8 175.1 91.8 REMARK 620 6 HOH A 838 O 175.4 88.7 93.8 94.7 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 828 O REMARK 620 2 HOH A 829 O 176.9 REMARK 620 3 HOH A 830 O 89.7 89.7 REMARK 620 4 HOH A 831 O 95.1 85.6 175.1 REMARK 620 5 HOH A 839 O 89.6 87.4 93.5 87.8 REMARK 620 6 HOH A 840 O 90.4 92.6 85.7 93.0 179.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 547 O REMARK 620 2 HOH B 474 O 87.0 REMARK 620 3 HOH B 536 O 88.2 174.7 REMARK 620 4 HOH B 620 O 177.3 95.6 89.2 REMARK 620 5 HOH B 664 O 86.1 90.2 91.7 93.2 REMARK 620 6 HOH B 665 O 93.2 90.0 88.0 87.5 179.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 619 O REMARK 620 2 HOH B 858 O 175.9 REMARK 620 3 HOH B 859 O 86.8 94.5 REMARK 620 4 HOH B 860 O 90.6 93.3 90.5 REMARK 620 5 HOH B 861 O 88.3 90.2 174.0 92.9 REMARK 620 6 HOH B 862 O 87.6 88.5 90.6 177.8 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 666 O REMARK 620 2 HOH B 863 O 86.6 REMARK 620 3 HOH B 873 O 92.0 89.6 REMARK 620 4 HOH B 874 O 94.1 88.7 173.5 REMARK 620 5 HOH B 875 O 178.3 94.8 86.9 87.0 REMARK 620 6 HOH B 877 O 89.2 175.7 90.7 91.4 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 307 DBREF 4NQ1 A 1 290 UNP D5T7I7 D5T7I7_LEGP2 1 290 DBREF 4NQ1 B 1 290 UNP D5T7I7 D5T7I7_LEGP2 1 290 SEQRES 1 A 290 MET PHE SER GLY SER ILE VAL ALA LEU VAL THR PRO MET SEQRES 2 A 290 ARG ASN ASP SER VAL ASP VAL HIS HIS LEU ARG GLU LEU SEQRES 3 A 290 VAL GLU PHE HIS ILE ALA LYS GLY THR HIS ALA LEU VAL SEQRES 4 A 290 ALA ALA GLY THR THR GLY GLU ALA GLY THR LEU SER HIS SEQRES 5 A 290 SER GLU LYS LEU LEU VAL ILE LYS THR VAL ILE GLU GLN SEQRES 6 A 290 ALA LYS GLU ARG VAL PRO VAL ILE ALA GLY THR ALA MET SEQRES 7 A 290 ASN ALA THR LYS ASP CYS ILE GLU LEU THR GLN GLN ALA SEQRES 8 A 290 MET GLU TYR GLY ALA HIS ALA ALA LEU ILE MET THR PRO SEQRES 9 A 290 ALA TYR ILE LYS PRO THR GLN GLU GLY LEU TYR LEU HIS SEQRES 10 A 290 TYR SER HIS ILE ALA GLN SER VAL ALA ILE PRO ILE ILE SEQRES 11 A 290 LEU TYR ASN VAL PRO GLY ARG THR ALA CYS ASP MET LEU SEQRES 12 A 290 PRO GLU THR VAL ALA ARG LEU ALA LYS ILE SER ASN ILE SEQRES 13 A 290 ILE GLY ILE KPI GLU ALA THR GLY GLN MET THR ARG LEU SEQRES 14 A 290 GLN GLN ILE LEU ARG LEU CYS GLU GLY SER ILE ASP VAL SEQRES 15 A 290 TYR SER GLY ASP ASP LEU THR ALA ALA GLN TRP LEU LEU SEQRES 16 A 290 SER GLY ALA LYS GLY VAL ILE SER VAL THR ALA ASN VAL SEQRES 17 A 290 ALA ALA LYS LEU MET ALA LYS MET CYS ASP LEU ALA MET SEQRES 18 A 290 ASP ASP ASP GLN ALA GLY CYS LEU ARG ILE GLN GLU GLN SEQRES 19 A 290 LEU MET PRO LEU HIS GLU LEU LEU PHE VAL GLU SER ASN SEQRES 20 A 290 PRO ILE PRO VAL LYS TRP ALA MET LYS LYS MET GLY LEU SEQRES 21 A 290 ILE GLY GLY GLU LEU ARG LEU PRO MET THR GLU LEU SER SEQRES 22 A 290 GLU LYS HIS HIS GLN ALA LEU GLU LYS VAL LEU LYS ASN SEQRES 23 A 290 LEU GLU LEU ILE SEQRES 1 B 290 MET PHE SER GLY SER ILE VAL ALA LEU VAL THR PRO MET SEQRES 2 B 290 ARG ASN ASP SER VAL ASP VAL HIS HIS LEU ARG GLU LEU SEQRES 3 B 290 VAL GLU PHE HIS ILE ALA LYS GLY THR HIS ALA LEU VAL SEQRES 4 B 290 ALA ALA GLY THR THR GLY GLU ALA GLY THR LEU SER HIS SEQRES 5 B 290 SER GLU LYS LEU LEU VAL ILE LYS THR VAL ILE GLU GLN SEQRES 6 B 290 ALA LYS GLU ARG VAL PRO VAL ILE ALA GLY THR ALA MET SEQRES 7 B 290 ASN ALA THR LYS ASP CYS ILE GLU LEU THR GLN GLN ALA SEQRES 8 B 290 MET GLU TYR GLY ALA HIS ALA ALA LEU ILE MET THR PRO SEQRES 9 B 290 ALA TYR ILE LYS PRO THR GLN GLU GLY LEU TYR LEU HIS SEQRES 10 B 290 TYR SER HIS ILE ALA GLN SER VAL ALA ILE PRO ILE ILE SEQRES 11 B 290 LEU TYR ASN VAL PRO GLY ARG THR ALA CYS ASP MET LEU SEQRES 12 B 290 PRO GLU THR VAL ALA ARG LEU ALA LYS ILE SER ASN ILE SEQRES 13 B 290 ILE GLY ILE KPI GLU ALA THR GLY GLN MET THR ARG LEU SEQRES 14 B 290 GLN GLN ILE LEU ARG LEU CYS GLU GLY SER ILE ASP VAL SEQRES 15 B 290 TYR SER GLY ASP ASP LEU THR ALA ALA GLN TRP LEU LEU SEQRES 16 B 290 SER GLY ALA LYS GLY VAL ILE SER VAL THR ALA ASN VAL SEQRES 17 B 290 ALA ALA LYS LEU MET ALA LYS MET CYS ASP LEU ALA MET SEQRES 18 B 290 ASP ASP ASP GLN ALA GLY CYS LEU ARG ILE GLN GLU GLN SEQRES 19 B 290 LEU MET PRO LEU HIS GLU LEU LEU PHE VAL GLU SER ASN SEQRES 20 B 290 PRO ILE PRO VAL LYS TRP ALA MET LYS LYS MET GLY LEU SEQRES 21 B 290 ILE GLY GLY GLU LEU ARG LEU PRO MET THR GLU LEU SER SEQRES 22 B 290 GLU LYS HIS HIS GLN ALA LEU GLU LYS VAL LEU LYS ASN SEQRES 23 B 290 LEU GLU LEU ILE MODRES 4NQ1 KPI A 160 LYS MODRES 4NQ1 KPI B 160 LYS HET KPI A 160 14 HET KPI B 160 14 HET MRD A 301 8 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET MG A 305 1 HET MG A 306 1 HET MPD B 301 8 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET MG B 305 1 HET MG B 306 1 HET MG B 307 1 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 KPI 2(C9 H16 N2 O4) FORMUL 3 MRD C6 H14 O2 FORMUL 4 CL 6(CL 1-) FORMUL 7 MG 5(MG 2+) FORMUL 9 MPD C6 H14 O2 FORMUL 16 HOH *918(H2 O) HELIX 1 1 ASP A 19 GLY A 34 1 16 HELIX 2 2 GLY A 42 GLU A 46 5 5 HELIX 3 3 SER A 51 LYS A 67 1 17 HELIX 4 4 ALA A 80 GLY A 95 1 16 HELIX 5 5 THR A 110 VAL A 125 1 16 HELIX 6 6 VAL A 134 ALA A 139 1 6 HELIX 7 7 LEU A 143 LYS A 152 1 10 HELIX 8 8 GLN A 165 GLU A 177 1 13 HELIX 9 9 ASP A 186 LEU A 188 5 3 HELIX 10 10 THR A 189 LEU A 195 1 7 HELIX 11 11 VAL A 204 VAL A 208 5 5 HELIX 12 12 ALA A 209 ASP A 222 1 14 HELIX 13 13 ASP A 224 LEU A 242 1 19 HELIX 14 14 PRO A 248 MET A 258 1 11 HELIX 15 15 SER A 273 LYS A 275 5 3 HELIX 16 16 HIS A 276 LEU A 287 1 12 HELIX 17 17 ASP B 19 GLY B 34 1 16 HELIX 18 18 GLY B 42 GLU B 46 5 5 HELIX 19 19 SER B 51 LYS B 67 1 17 HELIX 20 20 ALA B 80 GLY B 95 1 16 HELIX 21 21 THR B 110 VAL B 125 1 16 HELIX 22 22 VAL B 134 ALA B 139 1 6 HELIX 23 23 LEU B 143 LYS B 152 1 10 HELIX 24 24 GLN B 165 GLU B 177 1 13 HELIX 25 25 ASP B 186 LEU B 188 5 3 HELIX 26 26 THR B 189 LEU B 195 1 7 HELIX 27 27 VAL B 204 VAL B 208 5 5 HELIX 28 28 ALA B 209 ASP B 222 1 14 HELIX 29 29 ASP B 224 LEU B 242 1 19 HELIX 30 30 PRO B 248 MET B 258 1 11 HELIX 31 31 SER B 273 LYS B 275 5 3 HELIX 32 32 HIS B 276 LEU B 287 1 12 SHEET 1 A 9 GLY A 4 ALA A 8 0 SHEET 2 A 9 ALA A 37 ALA A 40 1 O VAL A 39 N VAL A 7 SHEET 3 A 9 VAL A 72 GLY A 75 1 O ILE A 73 N LEU A 38 SHEET 4 A 9 ALA A 98 MET A 102 1 O ALA A 98 N ALA A 74 SHEET 5 A 9 ILE A 129 ASN A 133 1 O ILE A 130 N ALA A 99 SHEET 6 A 9 ILE A 156 GLU A 161 1 O KPI A 160 N LEU A 131 SHEET 7 A 9 ASP A 181 SER A 184 1 O TYR A 183 N ILE A 159 SHEET 8 A 9 GLY A 200 SER A 203 1 O ILE A 202 N SER A 184 SHEET 9 A 9 GLY A 4 ALA A 8 1 N ILE A 6 O SER A 203 SHEET 1 B 2 MET A 13 ARG A 14 0 SHEET 2 B 2 SER A 17 VAL A 18 -1 O SER A 17 N ARG A 14 SHEET 1 C 9 GLY B 4 ALA B 8 0 SHEET 2 C 9 ALA B 37 ALA B 40 1 O VAL B 39 N VAL B 7 SHEET 3 C 9 VAL B 72 GLY B 75 1 O ILE B 73 N LEU B 38 SHEET 4 C 9 ALA B 98 MET B 102 1 O ALA B 98 N ALA B 74 SHEET 5 C 9 ILE B 129 ASN B 133 1 O ILE B 130 N ALA B 99 SHEET 6 C 9 ILE B 156 GLU B 161 1 O KPI B 160 N LEU B 131 SHEET 7 C 9 ASP B 181 SER B 184 1 O TYR B 183 N ILE B 159 SHEET 8 C 9 GLY B 200 SER B 203 1 O ILE B 202 N SER B 184 SHEET 9 C 9 GLY B 4 ALA B 8 1 N ALA B 8 O SER B 203 SHEET 1 D 2 MET B 13 ARG B 14 0 SHEET 2 D 2 SER B 17 VAL B 18 -1 O SER B 17 N ARG B 14 LINK C ILE A 159 N KPI A 160 1555 1555 1.42 LINK C KPI A 160 N GLU A 161 1555 1555 1.39 LINK C ILE B 159 N KPI B 160 1555 1555 1.31 LINK C KPI B 160 N GLU B 161 1555 1555 1.32 LINK MG MG A 305 O HOH A 628 1555 1555 2.18 LINK MG MG A 305 O HOH A 631 1555 1555 2.14 LINK MG MG A 305 O HOH A 825 1555 1555 2.12 LINK MG MG A 305 O HOH A 826 1555 1555 2.04 LINK MG MG A 305 O HOH A 827 1555 1555 2.19 LINK MG MG A 305 O HOH A 838 1555 1555 2.07 LINK MG MG A 306 O HOH A 828 1555 1555 1.99 LINK MG MG A 306 O HOH A 829 1555 1555 2.11 LINK MG MG A 306 O HOH A 830 1555 1555 2.25 LINK MG MG A 306 O HOH A 831 1555 1555 2.22 LINK MG MG A 306 O HOH A 839 1555 1555 2.17 LINK MG MG A 306 O HOH A 840 1555 1555 2.16 LINK O HOH A 547 MG MG B 307 1555 1555 2.24 LINK MG MG B 305 O HOH B 619 1555 1555 2.15 LINK MG MG B 305 O HOH B 858 1555 1555 2.13 LINK MG MG B 305 O HOH B 859 1555 1555 2.00 LINK MG MG B 305 O HOH B 860 1555 1555 2.04 LINK MG MG B 305 O HOH B 861 1555 1555 2.16 LINK MG MG B 305 O HOH B 862 1555 1555 2.12 LINK MG MG B 306 O HOH B 666 1555 1555 2.09 LINK MG MG B 306 O HOH B 863 1555 1555 2.21 LINK MG MG B 306 O HOH B 873 1555 1555 2.05 LINK MG MG B 306 O HOH B 874 1555 1555 2.18 LINK MG MG B 306 O HOH B 875 1555 1555 2.17 LINK MG MG B 306 O HOH B 877 1555 1555 2.22 LINK MG MG B 307 O HOH B 474 1555 1555 2.14 LINK MG MG B 307 O HOH B 536 1555 1555 2.06 LINK MG MG B 307 O HOH B 620 1555 1555 2.08 LINK MG MG B 307 O HOH B 664 1555 1555 2.14 LINK MG MG B 307 O HOH B 665 1555 1555 2.01 CISPEP 1 ASN A 247 PRO A 248 0 11.06 CISPEP 2 LEU A 267 PRO A 268 0 18.96 CISPEP 3 ASN B 247 PRO B 248 0 13.53 CISPEP 4 LEU B 267 PRO B 268 0 19.92 SITE 1 AC1 1 HOH B 481 SITE 1 AC2 5 PRO A 12 MET A 13 LYS A 252 GLY A 263 SITE 2 AC2 5 GLU A 264 SITE 1 AC3 4 VAL A 134 PRO A 135 GLY A 136 HOH A 536 SITE 1 AC4 7 LEU A 188 THR A 189 ALA A 191 GLN A 192 SITE 2 AC4 7 GLN A 232 HOH A 574 HOH A 577 SITE 1 AC5 12 HOH A 628 HOH A 631 HOH A 825 HOH A 826 SITE 2 AC5 12 HOH A 827 HOH A 838 HOH B 619 HOH B 858 SITE 3 AC5 12 HOH B 859 HOH B 860 HOH B 861 HOH B 862 SITE 1 AC6 12 HOH A 828 HOH A 829 HOH A 830 HOH A 831 SITE 2 AC6 12 HOH A 839 HOH A 840 HOH B 666 HOH B 863 SITE 3 AC6 12 HOH B 873 HOH B 874 HOH B 875 HOH B 877 SITE 1 AC7 7 THR B 81 LYS B 82 ILE B 85 HIS B 120 SITE 2 AC7 7 HOH B 542 HOH B 616 HOH B 741 SITE 1 AC8 5 HOH A 594 VAL B 134 PRO B 135 GLY B 136 SITE 2 AC8 5 HOH B 498 SITE 1 AC9 6 LEU B 188 THR B 189 ALA B 191 GLN B 192 SITE 2 AC9 6 GLN B 232 HOH B 599 SITE 1 BC1 5 PRO B 12 MET B 13 LYS B 252 GLY B 263 SITE 2 BC1 5 GLU B 264 SITE 1 BC2 12 HOH A 628 HOH A 631 HOH A 825 HOH A 826 SITE 2 BC2 12 HOH A 827 HOH A 838 HOH B 619 HOH B 858 SITE 3 BC2 12 HOH B 859 HOH B 860 HOH B 861 HOH B 862 SITE 1 BC3 12 HOH A 828 HOH A 829 HOH A 830 HOH A 831 SITE 2 BC3 12 HOH A 839 HOH A 840 HOH B 666 HOH B 863 SITE 3 BC3 12 HOH B 873 HOH B 874 HOH B 875 HOH B 877 SITE 1 BC4 6 HOH A 547 HOH B 474 HOH B 536 HOH B 620 SITE 2 BC4 6 HOH B 664 HOH B 665 CRYST1 89.310 89.310 290.180 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011197 0.006465 0.000000 0.00000 SCALE2 0.000000 0.012929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003446 0.00000