HEADER CALCIUM BINDING PROTEIN 28-NOV-13 4NSD TITLE CRYSTAL STRUCTURE OF CBARA1 IN THE CA2+ BINDING FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM UPTAKE PROTEIN 1, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 97-476; COMPND 5 SYNONYM: ATOPY-RELATED AUTOANTIGEN CALC, ARA CALC, CALCIUM-BINDING COMPND 6 ATOPY-RELATED AUTOANTIGEN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MICU1, CALC, CBARA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EF-HAND, CALCIUM BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,X.YANG,S.LI,Y.SHEN REVDAT 3 28-FEB-24 4NSD 1 REMARK SEQADV LINK REVDAT 2 23-APR-14 4NSD 1 JRNL REVDAT 1 26-FEB-14 4NSD 0 JRNL AUTH L.WANG,X.YANG,S.LI,Z.WANG,Y.LIU,J.FENG,Y.ZHU,Y.SHEN JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO MICU1 REGULATION OF JRNL TITL 2 MITOCHONDRIAL CALCIUM UPTAKE. JRNL REF EMBO J. V. 33 594 2014 JRNL REFN ISSN 0261-4189 JRNL PMID 24514027 JRNL DOI 10.1002/EMBJ.201386523 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 22144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3837 - 5.3968 0.99 2828 158 0.2292 0.2798 REMARK 3 2 5.3968 - 4.2868 0.99 2717 151 0.1793 0.2397 REMARK 3 3 4.2868 - 3.7458 0.99 2718 149 0.1844 0.2478 REMARK 3 4 3.7458 - 3.4037 0.98 2669 139 0.2047 0.2800 REMARK 3 5 3.4037 - 3.1600 0.97 2620 150 0.2240 0.3191 REMARK 3 6 3.1600 - 2.9738 0.95 2545 142 0.2221 0.3183 REMARK 3 7 2.9738 - 2.8250 0.93 2507 133 0.2549 0.3720 REMARK 3 8 2.8250 - 2.7000 0.89 2402 116 0.3010 0.4124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.13 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 39.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72780 REMARK 3 B22 (A**2) : 0.94710 REMARK 3 B33 (A**2) : 1.78080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4651 REMARK 3 ANGLE : 1.085 6268 REMARK 3 CHIRALITY : 0.072 702 REMARK 3 PLANARITY : 0.004 805 REMARK 3 DIHEDRAL : 17.906 1678 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.8581 -10.9619 -19.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.0805 REMARK 3 T33: 0.0443 T12: 0.0546 REMARK 3 T13: 0.0046 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.5562 L22: 0.4862 REMARK 3 L33: 0.3158 L12: -0.3540 REMARK 3 L13: -0.1782 L23: 0.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.0604 S13: -0.0253 REMARK 3 S21: 0.0799 S22: -0.0436 S23: -0.0282 REMARK 3 S31: 0.0347 S32: -0.0609 S33: 0.0538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 43% RESERVOIR SOLUTION COMPOSED OF REMARK 280 (W/V) 2-METHYL-2,4-PENTANEDIOL, PH 6.8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.64150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.42550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.90200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.42550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.64150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.90200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.64150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.90200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.42550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.90200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.64150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.42550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 49.64150 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.42550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 94 REMARK 465 SER A 95 REMARK 465 MET A 96 REMARK 465 GLU A 97 REMARK 465 GLU A 98 REMARK 465 LYS A 99 REMARK 465 LYS A 100 REMARK 465 LYS A 101 REMARK 465 LYS A 102 REMARK 465 ARG A 103 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 PHE A 106 REMARK 465 ARG A 107 REMARK 465 GLU A 160 REMARK 465 LYS A 161 REMARK 465 GLN A 162 REMARK 465 PRO A 163 REMARK 465 GLU A 164 REMARK 465 ARG A 175 REMARK 465 PHE A 176 REMARK 465 ASP A 177 REMARK 465 GLY A 178 REMARK 465 LYS A 179 REMARK 465 LYS A 180 REMARK 465 ILE A 181 REMARK 465 SER A 182 REMARK 465 GLN A 183 REMARK 465 GLU A 184 REMARK 465 ARG A 185 REMARK 465 GLU A 186 REMARK 465 LYS A 187 REMARK 465 PHE A 188 REMARK 465 ALA A 189 REMARK 465 ASP A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 GLN A 253 REMARK 465 THR A 254 REMARK 465 SER A 255 REMARK 465 MET A 256 REMARK 465 GLY A 257 REMARK 465 MET A 258 REMARK 465 ARG A 259 REMARK 465 HIS A 260 REMARK 465 ARG A 261 REMARK 465 ASP A 262 REMARK 465 ARG A 263 REMARK 465 PRO A 264 REMARK 465 THR A 265 REMARK 465 THR A 266 REMARK 465 GLY A 267 REMARK 465 ASN A 268 REMARK 465 THR A 269 REMARK 465 LEU A 270 REMARK 465 LYS A 271 REMARK 465 SER A 272 REMARK 465 GLY A 273 REMARK 465 LEU A 274 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 GLY B 94 REMARK 465 SER B 95 REMARK 465 MET B 96 REMARK 465 GLU B 97 REMARK 465 GLU B 98 REMARK 465 LYS B 99 REMARK 465 LYS B 100 REMARK 465 LYS B 101 REMARK 465 LYS B 102 REMARK 465 ARG B 103 REMARK 465 SER B 104 REMARK 465 GLY B 105 REMARK 465 PHE B 106 REMARK 465 ARG B 107 REMARK 465 ASP B 108 REMARK 465 ARG B 109 REMARK 465 LYS B 110 REMARK 465 VAL B 111 REMARK 465 MET B 112 REMARK 465 GLU B 113 REMARK 465 TYR B 114 REMARK 465 GLU B 115 REMARK 465 ASN B 116 REMARK 465 ARG B 117 REMARK 465 GLU B 160 REMARK 465 LYS B 161 REMARK 465 GLN B 162 REMARK 465 PRO B 163 REMARK 465 ARG B 175 REMARK 465 PHE B 176 REMARK 465 ASP B 177 REMARK 465 GLY B 178 REMARK 465 LYS B 179 REMARK 465 LYS B 180 REMARK 465 ILE B 181 REMARK 465 SER B 182 REMARK 465 GLN B 183 REMARK 465 GLU B 184 REMARK 465 ARG B 185 REMARK 465 GLU B 186 REMARK 465 LYS B 187 REMARK 465 PHE B 188 REMARK 465 ALA B 189 REMARK 465 ASP B 190 REMARK 465 GLU B 191 REMARK 465 GLN B 253 REMARK 465 THR B 254 REMARK 465 SER B 255 REMARK 465 MET B 256 REMARK 465 GLY B 257 REMARK 465 MET B 258 REMARK 465 ARG B 259 REMARK 465 HIS B 260 REMARK 465 ARG B 261 REMARK 465 ASP B 262 REMARK 465 ARG B 263 REMARK 465 PRO B 264 REMARK 465 THR B 265 REMARK 465 THR B 266 REMARK 465 GLY B 267 REMARK 465 ASN B 268 REMARK 465 THR B 269 REMARK 465 LEU B 270 REMARK 465 LYS B 271 REMARK 465 SER B 272 REMARK 465 GLY B 273 REMARK 465 ARG B 443 REMARK 465 GLY B 444 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 111 CG1 CG2 REMARK 470 MET A 112 CG SD CE REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 HIS A 165 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 CYS A 275 SG REMARK 470 SER A 276 OG REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 MET A 442 CG SD CE REMARK 470 ILE B 118 CG1 CG2 CD1 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 159 CG OD1 ND2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 HIS B 165 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LEU B 274 CG CD1 CD2 REMARK 470 CYS B 275 SG REMARK 470 SER B 276 OG REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 LYS B 351 CG CD CE NZ REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LYS B 431 CG CD CE NZ REMARK 470 MET B 442 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 119 O ARG A 154 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 121 72.51 -110.25 REMARK 500 GLU A 139 140.32 -34.50 REMARK 500 PRO A 158 161.81 -48.83 REMARK 500 ILE A 194 15.28 -66.74 REMARK 500 GLU A 200 24.83 -78.64 REMARK 500 ASP A 231 87.62 -61.87 REMARK 500 ARG A 251 -73.36 -50.25 REMARK 500 ARG A 314 10.23 -64.29 REMARK 500 ASP A 316 78.19 52.24 REMARK 500 GLN A 348 0.19 -66.18 REMARK 500 GLU A 355 -82.24 -76.98 REMARK 500 MET A 386 32.72 -150.37 REMARK 500 PHE A 433 -66.90 -141.37 REMARK 500 TYR B 121 -168.29 -105.76 REMARK 500 SER B 122 -126.61 33.16 REMARK 500 THR B 123 77.46 41.08 REMARK 500 PRO B 124 -30.76 -35.41 REMARK 500 SER B 138 49.06 -109.46 REMARK 500 GLU B 139 130.66 -38.89 REMARK 500 HIS B 165 141.19 136.67 REMARK 500 GLU B 200 42.33 -96.03 REMARK 500 ARG B 251 45.98 -66.67 REMARK 500 LEU B 287 22.58 46.23 REMARK 500 ASP B 316 82.33 43.18 REMARK 500 SER B 339 129.65 -171.61 REMARK 500 SER B 382 19.12 -62.00 REMARK 500 ALA B 387 110.49 -31.19 REMARK 500 ALA B 389 -157.25 -74.95 REMARK 500 ASP B 423 0.47 -65.59 REMARK 500 PHE B 433 -71.39 -142.24 REMARK 500 LEU B 441 12.35 -63.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 121 SER B 122 -148.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 ASN A 233 OD1 73.1 REMARK 620 3 ASP A 235 OD1 78.3 70.8 REMARK 620 4 GLU A 237 O 67.8 134.2 78.8 REMARK 620 5 GLU A 242 OE1 119.9 116.5 161.3 103.3 REMARK 620 6 GLU A 242 OE2 98.7 68.7 138.3 139.1 48.5 REMARK 620 7 HOH A 608 O 157.4 88.7 83.2 121.2 79.9 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 421 OD1 REMARK 620 2 ASP A 423 OD1 72.1 REMARK 620 3 ASP A 423 OD2 111.5 42.4 REMARK 620 4 ASN A 425 OD1 84.0 64.6 84.0 REMARK 620 5 GLU A 427 O 100.9 135.2 136.4 70.7 REMARK 620 6 GLU A 432 OE2 120.3 141.3 105.1 146.3 81.3 REMARK 620 7 GLU A 432 OE1 97.4 95.2 75.4 158.4 129.5 49.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD1 REMARK 620 2 ASN B 233 OD1 72.3 REMARK 620 3 ASP B 235 OD1 103.9 79.1 REMARK 620 4 GLU B 237 O 88.5 150.3 84.1 REMARK 620 5 GLU B 242 OE2 82.3 79.7 154.8 120.9 REMARK 620 6 GLU B 242 OE1 99.0 128.6 148.8 75.6 49.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 421 OD1 REMARK 620 2 ASP B 423 OD2 82.0 REMARK 620 3 ASN B 425 OD1 89.1 114.7 REMARK 620 4 GLU B 427 O 126.6 150.6 64.8 REMARK 620 5 GLU B 432 OE2 133.5 66.8 134.4 92.3 REMARK 620 6 GLU B 432 OE1 89.8 56.4 171.0 122.4 44.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NSC RELATED DB: PDB DBREF 4NSD A 97 444 UNP Q9BPX6 MICU1_HUMAN 97 444 DBREF 4NSD B 97 444 UNP Q9BPX6 MICU1_HUMAN 97 444 SEQADV 4NSD GLY A 94 UNP Q9BPX6 EXPRESSION TAG SEQADV 4NSD SER A 95 UNP Q9BPX6 EXPRESSION TAG SEQADV 4NSD MET A 96 UNP Q9BPX6 EXPRESSION TAG SEQADV 4NSD GLY B 94 UNP Q9BPX6 EXPRESSION TAG SEQADV 4NSD SER B 95 UNP Q9BPX6 EXPRESSION TAG SEQADV 4NSD MET B 96 UNP Q9BPX6 EXPRESSION TAG SEQRES 1 A 351 GLY SER MET GLU GLU LYS LYS LYS LYS ARG SER GLY PHE SEQRES 2 A 351 ARG ASP ARG LYS VAL MET GLU TYR GLU ASN ARG ILE ARG SEQRES 3 A 351 ALA TYR SER THR PRO ASP LYS ILE PHE ARG TYR PHE ALA SEQRES 4 A 351 THR LEU LYS VAL ILE SER GLU PRO GLY GLU ALA GLU VAL SEQRES 5 A 351 PHE MET THR PRO GLU ASP PHE VAL ARG SER ILE THR PRO SEQRES 6 A 351 ASN GLU LYS GLN PRO GLU HIS LEU GLY LEU ASP GLN TYR SEQRES 7 A 351 ILE ILE LYS ARG PHE ASP GLY LYS LYS ILE SER GLN GLU SEQRES 8 A 351 ARG GLU LYS PHE ALA ASP GLU GLY SER ILE PHE TYR THR SEQRES 9 A 351 LEU GLY GLU CYS GLY LEU ILE SER PHE SER ASP TYR ILE SEQRES 10 A 351 PHE LEU THR THR VAL LEU SER THR PRO GLN ARG ASN PHE SEQRES 11 A 351 GLU ILE ALA PHE LYS MET PHE ASP LEU ASN GLY ASP GLY SEQRES 12 A 351 GLU VAL ASP MET GLU GLU PHE GLU GLN VAL GLN SER ILE SEQRES 13 A 351 ILE ARG SER GLN THR SER MET GLY MET ARG HIS ARG ASP SEQRES 14 A 351 ARG PRO THR THR GLY ASN THR LEU LYS SER GLY LEU CYS SEQRES 15 A 351 SER ALA LEU THR THR TYR PHE PHE GLY ALA ASP LEU LYS SEQRES 16 A 351 GLY LYS LEU THR ILE LYS ASN PHE LEU GLU PHE GLN ARG SEQRES 17 A 351 LYS LEU GLN HIS ASP VAL LEU LYS LEU GLU PHE GLU ARG SEQRES 18 A 351 HIS ASP PRO VAL ASP GLY ARG ILE THR GLU ARG GLN PHE SEQRES 19 A 351 GLY GLY MET LEU LEU ALA TYR SER GLY VAL GLN SER LYS SEQRES 20 A 351 LYS LEU THR ALA MET GLN ARG GLN LEU LYS LYS HIS PHE SEQRES 21 A 351 LYS GLU GLY LYS GLY LEU THR PHE GLN GLU VAL GLU ASN SEQRES 22 A 351 PHE PHE THR PHE LEU LYS ASN ILE ASN ASP VAL ASP THR SEQRES 23 A 351 ALA LEU SER PHE TYR HIS MET ALA GLY ALA SER LEU ASP SEQRES 24 A 351 LYS VAL THR MET GLN GLN VAL ALA ARG THR VAL ALA LYS SEQRES 25 A 351 VAL GLU LEU SER ASP HIS VAL CYS ASP VAL VAL PHE ALA SEQRES 26 A 351 LEU PHE ASP CYS ASP GLY ASN GLY GLU LEU SER ASN LYS SEQRES 27 A 351 GLU PHE VAL SER ILE MET LYS GLN ARG LEU MET ARG GLY SEQRES 1 B 351 GLY SER MET GLU GLU LYS LYS LYS LYS ARG SER GLY PHE SEQRES 2 B 351 ARG ASP ARG LYS VAL MET GLU TYR GLU ASN ARG ILE ARG SEQRES 3 B 351 ALA TYR SER THR PRO ASP LYS ILE PHE ARG TYR PHE ALA SEQRES 4 B 351 THR LEU LYS VAL ILE SER GLU PRO GLY GLU ALA GLU VAL SEQRES 5 B 351 PHE MET THR PRO GLU ASP PHE VAL ARG SER ILE THR PRO SEQRES 6 B 351 ASN GLU LYS GLN PRO GLU HIS LEU GLY LEU ASP GLN TYR SEQRES 7 B 351 ILE ILE LYS ARG PHE ASP GLY LYS LYS ILE SER GLN GLU SEQRES 8 B 351 ARG GLU LYS PHE ALA ASP GLU GLY SER ILE PHE TYR THR SEQRES 9 B 351 LEU GLY GLU CYS GLY LEU ILE SER PHE SER ASP TYR ILE SEQRES 10 B 351 PHE LEU THR THR VAL LEU SER THR PRO GLN ARG ASN PHE SEQRES 11 B 351 GLU ILE ALA PHE LYS MET PHE ASP LEU ASN GLY ASP GLY SEQRES 12 B 351 GLU VAL ASP MET GLU GLU PHE GLU GLN VAL GLN SER ILE SEQRES 13 B 351 ILE ARG SER GLN THR SER MET GLY MET ARG HIS ARG ASP SEQRES 14 B 351 ARG PRO THR THR GLY ASN THR LEU LYS SER GLY LEU CYS SEQRES 15 B 351 SER ALA LEU THR THR TYR PHE PHE GLY ALA ASP LEU LYS SEQRES 16 B 351 GLY LYS LEU THR ILE LYS ASN PHE LEU GLU PHE GLN ARG SEQRES 17 B 351 LYS LEU GLN HIS ASP VAL LEU LYS LEU GLU PHE GLU ARG SEQRES 18 B 351 HIS ASP PRO VAL ASP GLY ARG ILE THR GLU ARG GLN PHE SEQRES 19 B 351 GLY GLY MET LEU LEU ALA TYR SER GLY VAL GLN SER LYS SEQRES 20 B 351 LYS LEU THR ALA MET GLN ARG GLN LEU LYS LYS HIS PHE SEQRES 21 B 351 LYS GLU GLY LYS GLY LEU THR PHE GLN GLU VAL GLU ASN SEQRES 22 B 351 PHE PHE THR PHE LEU LYS ASN ILE ASN ASP VAL ASP THR SEQRES 23 B 351 ALA LEU SER PHE TYR HIS MET ALA GLY ALA SER LEU ASP SEQRES 24 B 351 LYS VAL THR MET GLN GLN VAL ALA ARG THR VAL ALA LYS SEQRES 25 B 351 VAL GLU LEU SER ASP HIS VAL CYS ASP VAL VAL PHE ALA SEQRES 26 B 351 LEU PHE ASP CYS ASP GLY ASN GLY GLU LEU SER ASN LYS SEQRES 27 B 351 GLU PHE VAL SER ILE MET LYS GLN ARG LEU MET ARG GLY HET CA A 501 1 HET CA A 502 1 HET CL A 503 1 HET CA B 501 1 HET CA B 502 1 HET MPD B 503 8 HET MPD B 504 8 HET MPD B 505 8 HET CL B 506 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 CA 4(CA 2+) FORMUL 5 CL 2(CL 1-) FORMUL 8 MPD 3(C6 H14 O2) FORMUL 12 HOH *30(H2 O) HELIX 1 1 ASP A 108 TYR A 121 1 14 HELIX 2 2 THR A 123 ALA A 132 1 10 HELIX 3 3 THR A 148 ILE A 156 1 9 HELIX 4 4 PHE A 195 GLY A 199 5 5 HELIX 5 5 PHE A 206 SER A 217 1 12 HELIX 6 6 PRO A 219 ASP A 231 1 13 HELIX 7 7 ASP A 239 SER A 252 1 14 HELIX 8 8 LEU A 278 GLY A 284 1 7 HELIX 9 9 THR A 292 ARG A 314 1 23 HELIX 10 10 THR A 323 GLY A 336 1 14 HELIX 11 11 SER A 339 GLN A 348 1 10 HELIX 12 12 GLN A 348 PHE A 353 1 6 HELIX 13 13 PHE A 361 ASN A 373 1 13 HELIX 14 14 ASN A 373 TYR A 384 1 12 HELIX 15 15 ASP A 392 LYS A 405 1 14 HELIX 16 16 SER A 409 ASP A 421 1 13 HELIX 17 17 PHE A 433 ARG A 440 1 8 HELIX 18 18 THR B 123 ALA B 132 1 10 HELIX 19 19 THR B 148 ILE B 156 1 9 HELIX 20 20 SER B 193 GLY B 199 5 7 HELIX 21 21 SER B 205 SER B 217 1 13 HELIX 22 22 PRO B 219 ASP B 231 1 13 HELIX 23 23 MET B 240 ILE B 250 1 11 HELIX 24 24 CYS B 275 PHE B 283 1 9 HELIX 25 25 THR B 292 ARG B 314 1 23 HELIX 26 26 THR B 323 GLY B 336 1 14 HELIX 27 27 SER B 339 PHE B 353 1 15 HELIX 28 28 PHE B 361 ASN B 373 1 13 HELIX 29 29 ASN B 373 SER B 382 1 10 HELIX 30 30 ASP B 392 LYS B 405 1 14 HELIX 31 31 SER B 409 ASP B 421 1 13 HELIX 32 32 PHE B 433 GLN B 439 1 7 SHEET 1 A 4 ASP A 169 ILE A 172 0 SHEET 2 A 4 LEU A 134 SER A 138 1 N ILE A 137 O ILE A 172 SHEET 3 A 4 ALA A 143 MET A 147 -1 O PHE A 146 N LEU A 134 SHEET 4 A 4 ILE A 204 SER A 205 -1 O ILE A 204 N MET A 147 SHEET 1 B 2 ARG A 321 ILE A 322 0 SHEET 2 B 2 LEU A 359 THR A 360 -1 O LEU A 359 N ILE A 322 SHEET 1 C 3 ALA B 143 PHE B 146 0 SHEET 2 C 3 LEU B 134 ILE B 137 -1 N LEU B 134 O PHE B 146 SHEET 3 C 3 LEU B 168 TYR B 171 1 O GLN B 170 N LYS B 135 SHEET 1 D 2 VAL B 238 ASP B 239 0 SHEET 2 D 2 LYS B 290 LEU B 291 -1 O LEU B 291 N VAL B 238 SHEET 1 E 2 ARG B 321 ILE B 322 0 SHEET 2 E 2 LEU B 359 THR B 360 -1 O LEU B 359 N ILE B 322 SHEET 1 F 2 SER B 390 LEU B 391 0 SHEET 2 F 2 LEU B 428 SER B 429 -1 O LEU B 428 N LEU B 391 LINK OD1 ASP A 231 CA CA A 501 1555 1555 2.49 LINK OD1 ASN A 233 CA CA A 501 1555 1555 2.63 LINK OD1 ASP A 235 CA CA A 501 1555 1555 2.45 LINK O GLU A 237 CA CA A 501 1555 1555 2.70 LINK OE1 GLU A 242 CA CA A 501 1555 1555 2.56 LINK OE2 GLU A 242 CA CA A 501 1555 1555 2.79 LINK OD1 ASP A 421 CA CA A 502 1555 1555 2.76 LINK OD1 ASP A 423 CA CA A 502 1555 1555 2.89 LINK OD2 ASP A 423 CA CA A 502 1555 1555 3.14 LINK OD1 ASN A 425 CA CA A 502 1555 1555 2.69 LINK O GLU A 427 CA CA A 502 1555 1555 2.42 LINK OE2 GLU A 432 CA CA A 502 1555 1555 2.56 LINK OE1 GLU A 432 CA CA A 502 1555 1555 2.74 LINK CA CA A 501 O HOH A 608 1555 1555 2.56 LINK OD1 ASP B 231 CA CA B 501 1555 1555 2.60 LINK OD1 ASN B 233 CA CA B 501 1555 1555 2.65 LINK OD1 ASP B 235 CA CA B 501 1555 1555 3.03 LINK O GLU B 237 CA CA B 501 1555 1555 2.42 LINK OE2 GLU B 242 CA CA B 501 1555 1555 2.63 LINK OE1 GLU B 242 CA CA B 501 1555 1555 2.67 LINK OD1 ASP B 421 CA CA B 502 1555 1555 2.53 LINK OD2 ASP B 423 CA CA B 502 1555 1555 2.78 LINK OD1 ASN B 425 CA CA B 502 1555 1555 2.70 LINK O GLU B 427 CA CA B 502 1555 1555 2.86 LINK OE2 GLU B 432 CA CA B 502 1555 1555 2.52 LINK OE1 GLU B 432 CA CA B 502 1555 1555 3.10 CISPEP 1 GLU A 139 PRO A 140 0 -1.91 CISPEP 2 GLU B 139 PRO B 140 0 14.18 SITE 1 AC1 6 ASP A 231 ASN A 233 ASP A 235 GLU A 237 SITE 2 AC1 6 GLU A 242 HOH A 608 SITE 1 AC2 5 ASP A 421 ASP A 423 ASN A 425 GLU A 427 SITE 2 AC2 5 GLU A 432 SITE 1 AC3 1 LYS A 228 SITE 1 AC4 5 ASP B 231 ASN B 233 ASP B 235 GLU B 237 SITE 2 AC4 5 GLU B 242 SITE 1 AC5 5 ASP B 421 ASP B 423 ASN B 425 GLU B 427 SITE 2 AC5 5 GLU B 432 SITE 1 AC6 5 PHE B 223 PHE B 230 PHE B 243 PHE B 282 SITE 2 AC6 5 LEU B 291 SITE 1 AC7 4 TYR B 384 GLN B 398 VAL B 399 THR B 402 CRYST1 99.283 105.804 156.851 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006375 0.00000