HEADER TRANSPORT PROTEIN 29-NOV-13 4NT2
TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS ACD11 (ACCELERATED-CELL-DEATH 11)
TITLE 2 COMPLEXED WITH LYSO-SPHINGOMYELIN (D18:1) AT 2.4 ANGSTROM RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ACCELERATED-CELL-DEATH 11;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: GLYCOLIPID TRANSFER PROTEIN, AT2G34690;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA;
SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS;
SOURCE 4 ORGANISM_TAXID: 3702;
SOURCE 5 GENE: ACD11, AT2G34690;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO
KEYWDS PROTEIN-LIPID COMPLEXES, GLTP-FOLD, LIPID TRANSFER PROTEIN, CELL
KEYWDS 2 DEATH, LYSOSM, LYSOSPHINGOMYELIN, CERAMIDE-1-PHOSPHATE, C1P,
KEYWDS 3 TRANSPORT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR D.K.SIMANSHU,R.E.BROWN,D.J.PATEL
REVDAT 4 20-SEP-23 4NT2 1 REMARK SEQADV
REVDAT 3 22-NOV-17 4NT2 1 REMARK
REVDAT 2 19-FEB-14 4NT2 1 JRNL
REVDAT 1 05-FEB-14 4NT2 0
JRNL AUTH D.K.SIMANSHU,X.ZHAI,D.MUNCH,D.HOFIUS,J.E.MARKHAM,
JRNL AUTH 2 J.BIELAWSKI,A.BIELAWSKA,L.MALININA,J.G.MOLOTKOVSKY,
JRNL AUTH 3 J.W.MUNDY,D.J.PATEL,R.E.BROWN
JRNL TITL ARABIDOPSIS ACCELERATED CELL DEATH 11, ACD11, IS A
JRNL TITL 2 CERAMIDE-1-PHOSPHATE TRANSFER PROTEIN AND INTERMEDIARY
JRNL TITL 3 REGULATOR OF PHYTOCERAMIDE LEVELS.
JRNL REF CELL REP V. 6 388 2014
JRNL REFN ESSN 2211-1247
JRNL PMID 24412362
JRNL DOI 10.1016/J.CELREP.2013.12.023
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.8.2_1309
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 3 NUMBER OF REFLECTIONS : 14519
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.192
REMARK 3 R VALUE (WORKING SET) : 0.191
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080
REMARK 3 FREE R VALUE TEST SET COUNT : 738
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 35.6259 - 4.1074 1.00 3018 131 0.1740 0.1844
REMARK 3 2 4.1074 - 3.2609 1.00 2814 153 0.1814 0.2111
REMARK 3 3 3.2609 - 2.8489 1.00 2767 155 0.2178 0.2777
REMARK 3 4 2.8489 - 2.5885 1.00 2749 149 0.2098 0.2781
REMARK 3 5 2.5885 - 2.4030 0.89 2433 150 0.2343 0.2533
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.30
REMARK 3 SHRINKAGE RADIUS : 1.00
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.290
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 41.62
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.27
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 1658
REMARK 3 ANGLE : 0.786 2241
REMARK 3 CHIRALITY : 0.053 253
REMARK 3 PLANARITY : 0.004 271
REMARK 3 DIHEDRAL : 12.890 628
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): -33.6985 -27.2843 5.0594
REMARK 3 T TENSOR
REMARK 3 T11: 0.1011 T22: 0.1334
REMARK 3 T33: 0.0956 T12: 0.0037
REMARK 3 T13: 0.0505 T23: -0.0549
REMARK 3 L TENSOR
REMARK 3 L11: 2.3566 L22: 1.6846
REMARK 3 L33: 0.9197 L12: 0.2776
REMARK 3 L13: -0.3273 L23: -0.5959
REMARK 3 S TENSOR
REMARK 3 S11: 0.0351 S12: 0.0873 S13: 0.1663
REMARK 3 S21: 0.0709 S22: 0.1092 S23: -0.1315
REMARK 3 S31: -0.0588 S32: -0.0566 S33: 0.0372
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4NT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-13.
REMARK 100 THE DEPOSITION ID IS D_1000083620.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-APR-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE
REMARK 200 CRYSTAL SI(220) SIDE BOUNCE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14869
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 200 DATA REDUNDANCY : 7.400
REMARK 200 R MERGE (I) : 0.08000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 4.20
REMARK 200 R MERGE FOR SHELL (I) : 0.45100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.960
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 4NT1
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.76
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 6.5, 2 M AMMONIUM
REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/2
REMARK 290 6555 X-Y,X,Z+1/2
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z
REMARK 290 10555 -Y,-X,-Z+1/2
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.50350
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.50350
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.50350
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.50350
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.50350
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.50350
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ASP A 3
REMARK 465 SER A 4
REMARK 465 GLU A 5
REMARK 465 ALA A 6
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 12 CE NZ
REMARK 470 LYS A 93 CG CD CE NZ
REMARK 470 LYS A 128 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 61 -57.07 -131.30
REMARK 500 SER A 121 31.48 -97.21
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 SPU A 302
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPU A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPU A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4NT1 RELATED DB: PDB
REMARK 900 RELATED ID: 4NTG RELATED DB: PDB
REMARK 900 RELATED ID: 4NTI RELATED DB: PDB
REMARK 900 RELATED ID: 4NTO RELATED DB: PDB
DBREF 4NT2 A 1 206 UNP O64587 O64587_ARATH 1 206
SEQADV 4NT2 SER A 0 UNP O64587 EXPRESSION TAG
SEQRES 1 A 207 SER MET ALA ASP SER GLU ALA ASP LYS PRO LEU ARG LYS
SEQRES 2 A 207 ILE SER ALA ALA PHE LYS LYS LEU ALA ILE ILE VAL ASN
SEQRES 3 A 207 SER PRO ASN PRO GLU VAL PRO VAL THR GLN PHE SER HIS
SEQRES 4 A 207 ALA CYS SER LEU VAL SER PRO LEU PHE GLY CYS LEU GLY
SEQRES 5 A 207 ILE ALA PHE LYS PHE ALA GLU MET ASP TYR VAL ALA LYS
SEQRES 6 A 207 VAL ASP ASP LEU VAL ARG ALA SER SER SER ILE SER THR
SEQRES 7 A 207 LEU VAL VAL MET MET ASP LYS ASP ILE GLU ALA ASP CYS
SEQRES 8 A 207 VAL ARG LYS ALA GLY SER HIS THR ARG ASN LEU LEU ARG
SEQRES 9 A 207 VAL LYS ARG GLY LEU ASP MET VAL LYS VAL LEU PHE GLU
SEQRES 10 A 207 GLN ILE ILE ALA SER GLU GLY ASP ASN SER LEU LYS ASP
SEQRES 11 A 207 PRO ALA THR LYS SER TYR ALA GLN VAL PHE ALA PRO HIS
SEQRES 12 A 207 HIS GLY TRP ALA ILE ARG LYS ALA VAL SER LEU GLY MET
SEQRES 13 A 207 TYR ALA LEU PRO THR ARG ALA HIS LEU LEU ASN MET LEU
SEQRES 14 A 207 LYS GLU ASP GLU ALA ALA ALA LYS ILE HIS MET GLN SER
SEQRES 15 A 207 TYR VAL ASN SER SER ALA PRO LEU ILE THR TYR LEU ASP
SEQRES 16 A 207 ASN LEU PHE LEU SER LYS GLN LEU GLY ILE ASP TRP
HET SPU A 301 31
HET SPU A 302 24
HET SO4 A 303 5
HET SO4 A 304 5
HET SO4 A 305 5
HET SO4 A 306 5
HET SO4 A 307 5
HET EDO A 308 4
HET EDO A 309 4
HETNAM SPU 2-{[(R)-{[(2S,3R,4E)-2-AMINO-3-HYDROXYOCTADEC-4-EN-1-
HETNAM 2 SPU YL]OXY}(HYDROXY)PHOSPHORYL]OXY}-N,N,N-
HETNAM 3 SPU TRIMETHYLETHANAMINIUM
HETNAM SO4 SULFATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETSYN SPU SPHINGOSYLPHOSPHORYLCHOLINE, SPHINGOSINE
HETSYN 2 SPU PHOSPHORYLCHOLINE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 SPU 2(C23 H50 N2 O5 P 1+)
FORMUL 4 SO4 5(O4 S 2-)
FORMUL 9 EDO 2(C2 H6 O2)
FORMUL 11 HOH *77(H2 O)
HELIX 1 1 LYS A 8 SER A 26 1 19
HELIX 2 2 PRO A 32 LEU A 42 1 11
HELIX 3 3 VAL A 43 GLY A 51 1 9
HELIX 4 4 ILE A 52 LYS A 55 5 4
HELIX 5 5 PHE A 56 TYR A 61 1 6
HELIX 6 6 TYR A 61 SER A 72 1 12
HELIX 7 7 THR A 77 ALA A 88 1 12
HELIX 8 8 SER A 96 SER A 121 1 26
HELIX 9 9 LEU A 127 PHE A 139 1 13
HELIX 10 10 ALA A 140 HIS A 143 5 4
HELIX 11 11 GLY A 144 MET A 155 1 12
HELIX 12 12 TYR A 156 LEU A 158 5 3
HELIX 13 13 THR A 160 LYS A 169 1 10
HELIX 14 14 ASP A 171 SER A 199 1 29
SITE 1 AC1 8 ASP A 60 HIS A 143 GLY A 144 ILE A 147
SITE 2 AC1 8 LEU A 153 SPU A 302 SO4 A 307 HOH A 426
SITE 1 AC2 7 TRP A 145 ILE A 147 LYS A 149 TYR A 156
SITE 2 AC2 7 SPU A 301 SO4 A 304 SO4 A 307
SITE 1 AC3 4 LYS A 64 ARG A 99 ARG A 103 HOH A 475
SITE 1 AC4 3 ARG A 148 LYS A 149 SPU A 302
SITE 1 AC5 2 SER A 181 ASN A 184
SITE 1 AC6 1 ARG A 11
SITE 1 AC7 4 TRP A 145 ARG A 148 SPU A 301 SPU A 302
SITE 1 AC8 6 ILE A 52 ALA A 53 PHE A 54 LYS A 55
SITE 2 AC8 6 PHE A 56 VAL A 151
SITE 1 AC9 4 VAL A 79 ASP A 83 LEU A 196 LYS A 200
CRYST1 108.827 108.827 105.007 90.00 90.00 120.00 P 63 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009189 0.005305 0.000000 0.00000
SCALE2 0.000000 0.010610 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009523 0.00000