data_4NT8 # _entry.id 4NT8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NT8 pdb_00004nt8 10.2210/pdb4nt8/pdb RCSB RCSB083626 ? ? WWPDB D_1000083626 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-03 2 'Structure model' 1 1 2023-11-08 3 'Structure model' 1 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site 8 3 'Structure model' pdbx_entry_details 9 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.conn_type_id' 22 2 'Structure model' '_struct_conn.id' 23 2 'Structure model' '_struct_conn.pdbx_dist_value' 24 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NT8 _pdbx_database_status.recvd_initial_deposition_date 2013-12-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3DLD _pdbx_database_related.details 'Native structure' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ngo, H.P.T.' 1 'Kim, J.K.' 2 'Kang, L.W.' 3 # _citation.id primary _citation.title 'Substrate complex structure of Xoo1075, a peptide deformylase, from Xanthomonas oryzae pv. oryzae' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ngo, H.P.T.' 1 ? primary 'Kim, J.K.' 2 ? primary 'Kang, L.W.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptide deformylase' 19129.656 1 3.5.1.88 ? 'UNP RESIDUES 42-212' ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn N-FORMYLMETHIONINE 177.221 1 ? ? ? ? 6 non-polymer syn ALANINE 89.093 1 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 8 water nat water 18.015 96 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PDF, Polypeptide deformylase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEG(CSD)LSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIE NFDTFGFDDVLSYDL ; _entity_poly.pdbx_seq_one_letter_code_can ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT FGFDDVLSYDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'ACETATE ION' ACT 4 'SODIUM ION' NA 5 N-FORMYLMETHIONINE FME 6 ALANINE ALA 7 GLYCEROL GOL 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 ARG n 1 4 ASP n 1 5 ILE n 1 6 ILE n 1 7 ARG n 1 8 MET n 1 9 GLY n 1 10 ASP n 1 11 LYS n 1 12 ARG n 1 13 LEU n 1 14 LEU n 1 15 ARG n 1 16 VAL n 1 17 ALA n 1 18 PRO n 1 19 GLN n 1 20 VAL n 1 21 THR n 1 22 ASN n 1 23 LEU n 1 24 GLY n 1 25 SER n 1 26 ALA n 1 27 GLU n 1 28 LEU n 1 29 HIS n 1 30 ALA n 1 31 LEU n 1 32 VAL n 1 33 SER n 1 34 ASP n 1 35 MET n 1 36 PHE n 1 37 GLU n 1 38 THR n 1 39 MET n 1 40 GLY n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 GLY n 1 45 VAL n 1 46 GLY n 1 47 LEU n 1 48 ALA n 1 49 ALA n 1 50 PRO n 1 51 GLN n 1 52 ILE n 1 53 ALA n 1 54 VAL n 1 55 ASP n 1 56 LEU n 1 57 GLN n 1 58 LEU n 1 59 MET n 1 60 VAL n 1 61 PHE n 1 62 GLY n 1 63 PHE n 1 64 GLU n 1 65 ALA n 1 66 SER n 1 67 GLU n 1 68 ARG n 1 69 TYR n 1 70 PRO n 1 71 GLU n 1 72 ALA n 1 73 PRO n 1 74 ALA n 1 75 VAL n 1 76 PRO n 1 77 LEU n 1 78 THR n 1 79 ALA n 1 80 LEU n 1 81 ALA n 1 82 ASN n 1 83 ALA n 1 84 GLN n 1 85 ILE n 1 86 GLU n 1 87 PRO n 1 88 LEU n 1 89 SER n 1 90 ASP n 1 91 GLU n 1 92 MET n 1 93 GLU n 1 94 ASN n 1 95 GLY n 1 96 TRP n 1 97 GLU n 1 98 GLY n 1 99 CSD n 1 100 LEU n 1 101 SER n 1 102 ILE n 1 103 PRO n 1 104 GLY n 1 105 LEU n 1 106 ARG n 1 107 ALA n 1 108 VAL n 1 109 ILE n 1 110 PRO n 1 111 ARG n 1 112 TYR n 1 113 ARG n 1 114 TYR n 1 115 ILE n 1 116 ARG n 1 117 TYR n 1 118 ARG n 1 119 GLY n 1 120 PHE n 1 121 ALA n 1 122 PRO n 1 123 ASP n 1 124 GLY n 1 125 SER n 1 126 PRO n 1 127 ILE n 1 128 GLU n 1 129 ARG n 1 130 GLU n 1 131 ALA n 1 132 GLU n 1 133 GLY n 1 134 PHE n 1 135 HIS n 1 136 ALA n 1 137 ARG n 1 138 VAL n 1 139 VAL n 1 140 GLN n 1 141 HIS n 1 142 GLU n 1 143 TYR n 1 144 ASP n 1 145 HIS n 1 146 LEU n 1 147 VAL n 1 148 GLY n 1 149 ARG n 1 150 LEU n 1 151 TYR n 1 152 PRO n 1 153 SER n 1 154 ARG n 1 155 ILE n 1 156 GLU n 1 157 ASN n 1 158 PHE n 1 159 ASP n 1 160 THR n 1 161 PHE n 1 162 GLY n 1 163 PHE n 1 164 ASP n 1 165 ASP n 1 166 VAL n 1 167 LEU n 1 168 SER n 1 169 TYR n 1 170 ASP n 1 171 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'def, XOO1075' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'KACC10331 / KXO85' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xanthomonas oryzae pv. oryzae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 291331 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CSD 'L-peptide linking' n 3-SULFINOALANINE 'S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE' 'C3 H7 N O4 S' 153.157 FME 'L-peptide linking' n N-FORMYLMETHIONINE ? 'C6 H11 N O3 S' 177.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 CSD 99 99 99 CSD CSW A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 HIS 141 141 141 HIS HIS A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 TYR 169 169 ? ? ? A . n A 1 170 ASP 170 170 ? ? ? A . n A 1 171 LEU 171 171 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 201 201 CD CD A . C 2 CD 1 202 202 CD CD A . D 2 CD 1 203 203 CD CD A . E 3 ACT 1 204 204 ACT ACT A . F 4 NA 1 205 205 NA NA A . G 4 NA 1 206 206 NA NA A . H 5 FME 1 207 207 FME FME A . I 6 ALA 1 208 208 ALA ALA A . J 7 GOL 1 209 209 GOL GOL A . K 8 HOH 1 301 301 HOH HOH A . K 8 HOH 2 302 302 HOH HOH A . K 8 HOH 3 303 303 HOH HOH A . K 8 HOH 4 304 304 HOH HOH A . K 8 HOH 5 305 305 HOH HOH A . K 8 HOH 6 306 306 HOH HOH A . K 8 HOH 7 307 307 HOH HOH A . K 8 HOH 8 308 308 HOH HOH A . K 8 HOH 9 309 309 HOH HOH A . K 8 HOH 10 310 310 HOH HOH A . K 8 HOH 11 311 311 HOH HOH A . K 8 HOH 12 312 312 HOH HOH A . K 8 HOH 13 313 313 HOH HOH A . K 8 HOH 14 314 314 HOH HOH A . K 8 HOH 15 315 315 HOH HOH A . K 8 HOH 16 316 316 HOH HOH A . K 8 HOH 17 317 317 HOH HOH A . K 8 HOH 18 318 318 HOH HOH A . K 8 HOH 19 319 319 HOH HOH A . K 8 HOH 20 320 320 HOH HOH A . K 8 HOH 21 321 321 HOH HOH A . K 8 HOH 22 322 322 HOH HOH A . K 8 HOH 23 323 323 HOH HOH A . K 8 HOH 24 324 324 HOH HOH A . K 8 HOH 25 325 325 HOH HOH A . K 8 HOH 26 326 326 HOH HOH A . K 8 HOH 27 327 327 HOH HOH A . K 8 HOH 28 328 328 HOH HOH A . K 8 HOH 29 329 329 HOH HOH A . K 8 HOH 30 330 330 HOH HOH A . K 8 HOH 31 331 331 HOH HOH A . K 8 HOH 32 332 332 HOH HOH A . K 8 HOH 33 333 333 HOH HOH A . K 8 HOH 34 334 334 HOH HOH A . K 8 HOH 35 335 335 HOH HOH A . K 8 HOH 36 336 336 HOH HOH A . K 8 HOH 37 337 337 HOH HOH A . K 8 HOH 38 338 338 HOH HOH A . K 8 HOH 39 339 339 HOH HOH A . K 8 HOH 40 340 340 HOH HOH A . K 8 HOH 41 341 341 HOH HOH A . K 8 HOH 42 342 342 HOH HOH A . K 8 HOH 43 343 343 HOH HOH A . K 8 HOH 44 344 344 HOH HOH A . K 8 HOH 45 345 345 HOH HOH A . K 8 HOH 46 346 346 HOH HOH A . K 8 HOH 47 347 347 HOH HOH A . K 8 HOH 48 348 348 HOH HOH A . K 8 HOH 49 349 349 HOH HOH A . K 8 HOH 50 350 350 HOH HOH A . K 8 HOH 51 351 351 HOH HOH A . K 8 HOH 52 352 352 HOH HOH A . K 8 HOH 53 353 353 HOH HOH A . K 8 HOH 54 354 354 HOH HOH A . K 8 HOH 55 355 355 HOH HOH A . K 8 HOH 56 356 356 HOH HOH A . K 8 HOH 57 357 357 HOH HOH A . K 8 HOH 58 358 358 HOH HOH A . K 8 HOH 59 359 359 HOH HOH A . K 8 HOH 60 360 360 HOH HOH A . K 8 HOH 61 361 361 HOH HOH A . K 8 HOH 62 362 362 HOH HOH A . K 8 HOH 63 363 363 HOH HOH A . K 8 HOH 64 364 364 HOH HOH A . K 8 HOH 65 365 365 HOH HOH A . K 8 HOH 66 366 366 HOH HOH A . K 8 HOH 67 367 367 HOH HOH A . K 8 HOH 68 368 368 HOH HOH A . K 8 HOH 69 369 369 HOH HOH A . K 8 HOH 70 370 370 HOH HOH A . K 8 HOH 71 371 371 HOH HOH A . K 8 HOH 72 372 372 HOH HOH A . K 8 HOH 73 373 373 HOH HOH A . K 8 HOH 74 374 374 HOH HOH A . K 8 HOH 75 375 375 HOH HOH A . K 8 HOH 76 376 376 HOH HOH A . K 8 HOH 77 377 377 HOH HOH A . K 8 HOH 78 378 378 HOH HOH A . K 8 HOH 79 379 379 HOH HOH A . K 8 HOH 80 380 380 HOH HOH A . K 8 HOH 81 381 381 HOH HOH A . K 8 HOH 82 382 382 HOH HOH A . K 8 HOH 83 383 383 HOH HOH A . K 8 HOH 84 384 384 HOH HOH A . K 8 HOH 85 385 385 HOH HOH A . K 8 HOH 86 386 386 HOH HOH A . K 8 HOH 87 387 387 HOH HOH A . K 8 HOH 88 388 388 HOH HOH A . K 8 HOH 89 389 389 HOH HOH A . K 8 HOH 90 390 390 HOH HOH A . K 8 HOH 91 391 391 HOH HOH A . K 8 HOH 92 392 392 HOH HOH A . K 8 HOH 93 393 393 HOH HOH A . K 8 HOH 94 394 394 HOH HOH A . K 8 HOH 95 395 395 HOH HOH A . K 8 HOH 96 396 396 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 6.4.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4NT8 _cell.length_a 58.584 _cell.length_b 58.584 _cell.length_c 266.188 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NT8 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4NT8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.45 _exptl_crystal.density_percent_sol 64.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.05M cadmium sulfate, 0.1M HEPES pH 7.5, 2.0M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 287K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-11-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.99999 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4NT8 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 16778 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4NT8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13852 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.35 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.98 _refine.ls_R_factor_obs 0.19244 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19022 _refine.ls_R_factor_R_free 0.23547 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 729 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 29.755 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4FR8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.181 _refine.pdbx_overall_ESU_R_Free 0.171 _refine.overall_SU_ML 0.140 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.790 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1317 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1444 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 40.35 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.019 ? 1395 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1298 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.856 1.980 ? 1855 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.923 3.000 ? 2973 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.014 5.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.067 22.836 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.661 15.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.900 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 200 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1563 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 322 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.913 2.745 ? 678 'X-RAY DIFFRACTION' ? r_mcbond_other 1.894 2.741 ? 677 'X-RAY DIFFRACTION' ? r_mcangle_it 2.877 4.097 ? 844 'X-RAY DIFFRACTION' ? r_mcangle_other 3.128 4.177 ? 848 'X-RAY DIFFRACTION' ? r_scbond_it 3.252 3.154 ? 716 'X-RAY DIFFRACTION' ? r_scbond_other 3.115 3.228 ? 699 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 4.884 4.706 ? 1022 'X-RAY DIFFRACTION' ? r_long_range_B_refined 6.967 23.267 ? 1591 'X-RAY DIFFRACTION' ? r_long_range_B_other 6.967 23.295 ? 1592 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 1005 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 99.72 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4NT8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4NT8 _struct.title 'Formyl-methionine-alanine complex structure of peptide deformylase from Xanthomoonas oryzae pv. oryzae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NT8 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'metallopeptidase, peptide deformylase, cadmium, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 7 ? K N N 8 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5H3Z2_XANOR _struct_ref.pdbx_db_accession Q5H3Z2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT FGFDDVLSYDL ; _struct_ref.pdbx_align_begin 42 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NT8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5H3Z2 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 171 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3750 ? 1 MORE -86 ? 1 'SSA (A^2)' 15110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? ARG A 15 ? ASP A 10 ARG A 15 5 ? 6 HELX_P HELX_P2 2 SER A 25 ? ALA A 42 ? SER A 25 ALA A 42 1 ? 18 HELX_P HELX_P3 3 PRO A 50 ? ALA A 53 ? PRO A 50 ALA A 53 5 ? 4 HELX_P HELX_P4 4 GLY A 133 ? VAL A 147 ? GLY A 133 VAL A 147 1 ? 15 HELX_P HELX_P5 5 LEU A 150 ? ILE A 155 ? LEU A 150 ILE A 155 5 ? 6 HELX_P HELX_P6 6 ASN A 157 ? PHE A 161 ? ASN A 157 PHE A 161 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 98 C ? ? ? 1_555 A CSD 99 N ? ? A GLY 98 A CSD 99 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A CSD 99 C ? ? ? 1_555 A LEU 100 N ? ? A CSD 99 A LEU 100 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale3 covale both ? H FME . C ? ? ? 1_555 I ALA . N ? ? A FME 207 A ALA 208 1_555 ? ? ? ? ? ? ? 1.320 ? ? metalc1 metalc ? ? A GLU 37 OE2 ? ? ? 1_555 B CD . CD ? ? A GLU 37 A CD 201 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc2 metalc ? ? A CSD 99 OD2 ? ? ? 1_555 C CD . CD ? ? A CSD 99 A CD 202 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc3 metalc ? ? A CSD 99 SG ? ? ? 1_555 C CD . CD ? ? A CSD 99 A CD 202 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc4 metalc ? ? A LEU 105 O ? ? ? 1_555 G NA . NA ? ? A LEU 105 A NA 206 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc5 metalc ? ? A GLU 128 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 128 A CD 203 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc6 metalc ? ? A GLU 128 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 128 A CD 203 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc7 metalc ? ? A GLU 130 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 130 A CD 203 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc8 metalc ? ? A GLU 130 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 130 A CD 203 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc9 metalc ? ? A HIS 141 NE2 ? ? ? 1_555 C CD . CD ? ? A HIS 141 A CD 202 1_555 ? ? ? ? ? ? ? 2.257 ? ? metalc10 metalc ? ? A HIS 145 NE2 ? ? ? 1_555 C CD . CD ? ? A HIS 145 A CD 202 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc11 metalc ? ? A GLY 148 O ? ? ? 1_555 F NA . NA ? ? A GLY 148 A NA 205 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc12 metalc ? ? A ASP 164 OD2 ? ? ? 1_555 G NA . NA ? ? A ASP 164 A NA 206 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc13 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 366 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc14 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 367 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc15 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 372 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc16 metalc ? ? C CD . CD ? ? ? 1_555 H FME . O1 ? ? A CD 202 A FME 207 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc17 metalc ? ? C CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 202 A HOH 362 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc18 metalc ? ? D CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 203 A HOH 368 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc19 metalc ? ? D CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 203 A HOH 373 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc20 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 370 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc21 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 371 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc22 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 374 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc23 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 206 A HOH 337 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc24 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 206 A HOH 359 1_555 ? ? ? ? ? ? ? 2.264 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 366 ? 1_555 147.6 ? 2 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 367 ? 1_555 91.8 ? 3 O ? K HOH . ? A HOH 366 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 367 ? 1_555 107.5 ? 4 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 372 ? 1_555 102.2 ? 5 O ? K HOH . ? A HOH 366 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 372 ? 1_555 49.8 ? 6 O ? K HOH . ? A HOH 367 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 372 ? 1_555 151.3 ? 7 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 SG ? A CSD 99 ? A CSD 99 ? 1_555 30.4 ? 8 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 83.6 ? 9 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 107.2 ? 10 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 80.7 ? 11 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 93.2 ? 12 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 104.6 ? 13 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O1 ? H FME . ? A FME 207 ? 1_555 171.3 ? 14 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O1 ? H FME . ? A FME 207 ? 1_555 155.8 ? 15 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O1 ? H FME . ? A FME 207 ? 1_555 94.5 ? 16 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O1 ? H FME . ? A FME 207 ? 1_555 91.6 ? 17 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 116.7 ? 18 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 90.3 ? 19 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 110.0 ? 20 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 142.5 ? 21 O1 ? H FME . ? A FME 207 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 71.9 ? 22 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 121.5 ? 23 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 337 ? 1_555 93.9 ? 24 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 337 ? 1_555 125.4 ? 25 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 359 ? 1_555 108.7 ? 26 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 359 ? 1_555 79.6 ? 27 O ? K HOH . ? A HOH 337 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 359 ? 1_555 129.9 ? 28 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 56.8 ? 29 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 124.6 ? 30 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 139.8 ? 31 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 86.1 ? 32 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 142.7 ? 33 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 57.0 ? 34 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 368 ? 1_555 102.3 ? 35 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 368 ? 1_555 72.2 ? 36 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 368 ? 1_555 68.5 ? 37 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 368 ? 1_555 117.0 ? 38 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 373 ? 1_555 168.6 ? 39 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 373 ? 1_555 113.5 ? 40 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 373 ? 1_555 57.7 ? 41 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 373 ? 1_555 102.9 ? 42 O ? K HOH . ? A HOH 368 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 373 ? 1_555 67.5 ? 43 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 370 ? 1_555 86.2 ? 44 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 371 ? 1_555 112.4 ? 45 O ? K HOH . ? A HOH 370 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 371 ? 1_555 58.7 ? 46 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 374 ? 1_555 130.1 ? 47 O ? K HOH . ? A HOH 370 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 374 ? 1_555 62.0 ? 48 O ? K HOH . ? A HOH 371 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 374 ? 1_555 84.2 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CSD A 99 ? . . . . CSD A 99 ? 1_555 . . . . . . . CYS 1 CSD Oxidation 'Named protein modification' 2 CSD A 99 ? . . . . CSD A 99 ? 1_555 . . . . . . . CYS 2 CSD Hydroxylation 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 46 ? ALA A 48 ? GLY A 46 ALA A 48 A 2 LEU A 58 ? PHE A 63 ? LEU A 58 PHE A 63 A 3 VAL A 75 ? PRO A 87 ? VAL A 75 PRO A 87 A 4 TYR A 114 ? PHE A 120 ? TYR A 114 PHE A 120 A 5 PRO A 126 ? GLU A 132 ? PRO A 126 GLU A 132 B 1 MET A 92 ? CSD A 99 ? MET A 92 CSD A 99 B 2 ILE A 102 ? TYR A 112 ? ILE A 102 TYR A 112 B 3 GLY A 162 ? PHE A 163 ? GLY A 162 PHE A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 47 ? N LEU A 47 O VAL A 60 ? O VAL A 60 A 2 3 N PHE A 61 ? N PHE A 61 O THR A 78 ? O THR A 78 A 3 4 N ALA A 81 ? N ALA A 81 O PHE A 120 ? O PHE A 120 A 4 5 N GLY A 119 ? N GLY A 119 O ILE A 127 ? O ILE A 127 B 1 2 N GLY A 95 ? N GLY A 95 O ILE A 109 ? O ILE A 109 B 2 3 N ARG A 106 ? N ARG A 106 O GLY A 162 ? O GLY A 162 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 201 ? 5 'BINDING SITE FOR RESIDUE CD A 201' AC2 Software A CD 202 ? 6 'BINDING SITE FOR RESIDUE CD A 202' AC3 Software A CD 203 ? 5 'BINDING SITE FOR RESIDUE CD A 203' AC4 Software A ACT 204 ? 8 'BINDING SITE FOR RESIDUE ACT A 204' AC5 Software A NA 205 ? 6 'BINDING SITE FOR RESIDUE NA A 205' AC6 Software A NA 206 ? 4 'BINDING SITE FOR RESIDUE NA A 206' AC7 Software A FME 207 ? 12 'BINDING SITE FOR RESIDUE FME A 207' AC8 Software A ALA 208 ? 5 'BINDING SITE FOR RESIDUE ALA A 208' AC9 Software A GOL 209 ? 2 'BINDING SITE FOR RESIDUE GOL A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 37 ? GLU A 37 . ? 1_555 ? 2 AC1 5 GLU A 132 ? GLU A 132 . ? 8_445 ? 3 AC1 5 HOH K . ? HOH A 366 . ? 1_555 ? 4 AC1 5 HOH K . ? HOH A 367 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 372 . ? 1_555 ? 6 AC2 6 GLN A 51 ? GLN A 51 . ? 1_555 ? 7 AC2 6 CSD A 99 ? CSD A 99 . ? 1_555 ? 8 AC2 6 HIS A 141 ? HIS A 141 . ? 1_555 ? 9 AC2 6 HIS A 145 ? HIS A 145 . ? 1_555 ? 10 AC2 6 FME H . ? FME A 207 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH A 362 . ? 1_555 ? 12 AC3 5 HIS A 43 ? HIS A 43 . ? 8_545 ? 13 AC3 5 GLU A 128 ? GLU A 128 . ? 1_555 ? 14 AC3 5 GLU A 130 ? GLU A 130 . ? 1_555 ? 15 AC3 5 HOH K . ? HOH A 368 . ? 1_555 ? 16 AC3 5 HOH K . ? HOH A 373 . ? 1_555 ? 17 AC4 8 LEU A 14 ? LEU A 14 . ? 1_555 ? 18 AC4 8 ARG A 149 ? ARG A 149 . ? 1_555 ? 19 AC4 8 LEU A 150 ? LEU A 150 . ? 1_555 ? 20 AC4 8 SER A 153 ? SER A 153 . ? 1_555 ? 21 AC4 8 ASP A 159 ? ASP A 159 . ? 8_555 ? 22 AC4 8 HOH K . ? HOH A 350 . ? 8_555 ? 23 AC4 8 HOH K . ? HOH A 378 . ? 1_555 ? 24 AC4 8 HOH K . ? HOH A 385 . ? 8_555 ? 25 AC5 6 LEU A 14 ? LEU A 14 . ? 1_555 ? 26 AC5 6 GLY A 148 ? GLY A 148 . ? 1_555 ? 27 AC5 6 ASP A 159 ? ASP A 159 . ? 8_555 ? 28 AC5 6 HOH K . ? HOH A 370 . ? 1_555 ? 29 AC5 6 HOH K . ? HOH A 371 . ? 1_555 ? 30 AC5 6 HOH K . ? HOH A 374 . ? 1_555 ? 31 AC6 4 LEU A 105 ? LEU A 105 . ? 1_555 ? 32 AC6 4 ASP A 164 ? ASP A 164 . ? 1_555 ? 33 AC6 4 HOH K . ? HOH A 337 . ? 1_555 ? 34 AC6 4 HOH K . ? HOH A 359 . ? 1_555 ? 35 AC7 12 GLY A 44 ? GLY A 44 . ? 1_555 ? 36 AC7 12 VAL A 45 ? VAL A 45 . ? 1_555 ? 37 AC7 12 GLY A 46 ? GLY A 46 . ? 1_555 ? 38 AC7 12 GLN A 51 ? GLN A 51 . ? 1_555 ? 39 AC7 12 GLY A 98 ? GLY A 98 . ? 1_555 ? 40 AC7 12 PHE A 134 ? PHE A 134 . ? 1_555 ? 41 AC7 12 HIS A 141 ? HIS A 141 . ? 1_555 ? 42 AC7 12 GLU A 142 ? GLU A 142 . ? 1_555 ? 43 AC7 12 HIS A 145 ? HIS A 145 . ? 1_555 ? 44 AC7 12 CD C . ? CD A 202 . ? 1_555 ? 45 AC7 12 ALA I . ? ALA A 208 . ? 1_555 ? 46 AC7 12 HOH K . ? HOH A 362 . ? 1_555 ? 47 AC8 5 ARG A 68 ? ARG A 68 . ? 1_555 ? 48 AC8 5 TYR A 69 ? TYR A 69 . ? 1_555 ? 49 AC8 5 GLY A 98 ? GLY A 98 . ? 1_555 ? 50 AC8 5 LEU A 100 ? LEU A 100 . ? 1_555 ? 51 AC8 5 FME H . ? FME A 207 . ? 1_555 ? 52 AC9 2 ASN A 22 ? ASN A 22 . ? 1_555 ? 53 AC9 2 HOH K . ? HOH A 394 . ? 1_555 ? # _pdbx_entry_details.entry_id 4NT8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 366 ? ? O A HOH 372 ? ? 1.86 2 1 O A HOH 302 ? ? O A HOH 360 ? ? 2.03 3 1 OE2 A GLU 130 ? ? O A HOH 373 ? ? 2.11 4 1 OH A TYR 69 ? ? OXT A ALA 208 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 116 ? ? CZ A ARG 116 ? ? NH1 A ARG 116 ? ? 124.95 120.30 4.65 0.50 N 2 1 NE A ARG 116 ? ? CZ A ARG 116 ? ? NH2 A ARG 116 ? ? 115.81 120.30 -4.49 0.50 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSD _pdbx_struct_mod_residue.label_seq_id 99 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSD _pdbx_struct_mod_residue.auth_seq_id 99 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 3-SULFINOALANINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 384 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 169 ? A TYR 169 2 1 Y 1 A ASP 170 ? A ASP 170 3 1 Y 1 A LEU 171 ? A LEU 171 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CD CD CD N N 81 CSD N N N N 82 CSD CA C N R 83 CSD CB C N N 84 CSD SG S N N 85 CSD C C N N 86 CSD O O N N 87 CSD OXT O N N 88 CSD OD1 O N N 89 CSD OD2 O N N 90 CSD H H N N 91 CSD H2 H N N 92 CSD HA H N N 93 CSD HB2 H N N 94 CSD HB3 H N N 95 CSD HXT H N N 96 CSD HD2 H N N 97 FME N N N N 98 FME CN C N N 99 FME O1 O N N 100 FME CA C N S 101 FME CB C N N 102 FME CG C N N 103 FME SD S N N 104 FME CE C N N 105 FME C C N N 106 FME O O N N 107 FME OXT O N N 108 FME H H N N 109 FME HCN H N N 110 FME HA H N N 111 FME HB2 H N N 112 FME HB3 H N N 113 FME HG2 H N N 114 FME HG3 H N N 115 FME HE1 H N N 116 FME HE2 H N N 117 FME HE3 H N N 118 FME HXT H N N 119 GLN N N N N 120 GLN CA C N S 121 GLN C C N N 122 GLN O O N N 123 GLN CB C N N 124 GLN CG C N N 125 GLN CD C N N 126 GLN OE1 O N N 127 GLN NE2 N N N 128 GLN OXT O N N 129 GLN H H N N 130 GLN H2 H N N 131 GLN HA H N N 132 GLN HB2 H N N 133 GLN HB3 H N N 134 GLN HG2 H N N 135 GLN HG3 H N N 136 GLN HE21 H N N 137 GLN HE22 H N N 138 GLN HXT H N N 139 GLU N N N N 140 GLU CA C N S 141 GLU C C N N 142 GLU O O N N 143 GLU CB C N N 144 GLU CG C N N 145 GLU CD C N N 146 GLU OE1 O N N 147 GLU OE2 O N N 148 GLU OXT O N N 149 GLU H H N N 150 GLU H2 H N N 151 GLU HA H N N 152 GLU HB2 H N N 153 GLU HB3 H N N 154 GLU HG2 H N N 155 GLU HG3 H N N 156 GLU HE2 H N N 157 GLU HXT H N N 158 GLY N N N N 159 GLY CA C N N 160 GLY C C N N 161 GLY O O N N 162 GLY OXT O N N 163 GLY H H N N 164 GLY H2 H N N 165 GLY HA2 H N N 166 GLY HA3 H N N 167 GLY HXT H N N 168 GOL C1 C N N 169 GOL O1 O N N 170 GOL C2 C N N 171 GOL O2 O N N 172 GOL C3 C N N 173 GOL O3 O N N 174 GOL H11 H N N 175 GOL H12 H N N 176 GOL HO1 H N N 177 GOL H2 H N N 178 GOL HO2 H N N 179 GOL H31 H N N 180 GOL H32 H N N 181 GOL HO3 H N N 182 HIS N N N N 183 HIS CA C N S 184 HIS C C N N 185 HIS O O N N 186 HIS CB C N N 187 HIS CG C Y N 188 HIS ND1 N Y N 189 HIS CD2 C Y N 190 HIS CE1 C Y N 191 HIS NE2 N Y N 192 HIS OXT O N N 193 HIS H H N N 194 HIS H2 H N N 195 HIS HA H N N 196 HIS HB2 H N N 197 HIS HB3 H N N 198 HIS HD1 H N N 199 HIS HD2 H N N 200 HIS HE1 H N N 201 HIS HE2 H N N 202 HIS HXT H N N 203 HOH O O N N 204 HOH H1 H N N 205 HOH H2 H N N 206 ILE N N N N 207 ILE CA C N S 208 ILE C C N N 209 ILE O O N N 210 ILE CB C N S 211 ILE CG1 C N N 212 ILE CG2 C N N 213 ILE CD1 C N N 214 ILE OXT O N N 215 ILE H H N N 216 ILE H2 H N N 217 ILE HA H N N 218 ILE HB H N N 219 ILE HG12 H N N 220 ILE HG13 H N N 221 ILE HG21 H N N 222 ILE HG22 H N N 223 ILE HG23 H N N 224 ILE HD11 H N N 225 ILE HD12 H N N 226 ILE HD13 H N N 227 ILE HXT H N N 228 LEU N N N N 229 LEU CA C N S 230 LEU C C N N 231 LEU O O N N 232 LEU CB C N N 233 LEU CG C N N 234 LEU CD1 C N N 235 LEU CD2 C N N 236 LEU OXT O N N 237 LEU H H N N 238 LEU H2 H N N 239 LEU HA H N N 240 LEU HB2 H N N 241 LEU HB3 H N N 242 LEU HG H N N 243 LEU HD11 H N N 244 LEU HD12 H N N 245 LEU HD13 H N N 246 LEU HD21 H N N 247 LEU HD22 H N N 248 LEU HD23 H N N 249 LEU HXT H N N 250 LYS N N N N 251 LYS CA C N S 252 LYS C C N N 253 LYS O O N N 254 LYS CB C N N 255 LYS CG C N N 256 LYS CD C N N 257 LYS CE C N N 258 LYS NZ N N N 259 LYS OXT O N N 260 LYS H H N N 261 LYS H2 H N N 262 LYS HA H N N 263 LYS HB2 H N N 264 LYS HB3 H N N 265 LYS HG2 H N N 266 LYS HG3 H N N 267 LYS HD2 H N N 268 LYS HD3 H N N 269 LYS HE2 H N N 270 LYS HE3 H N N 271 LYS HZ1 H N N 272 LYS HZ2 H N N 273 LYS HZ3 H N N 274 LYS HXT H N N 275 MET N N N N 276 MET CA C N S 277 MET C C N N 278 MET O O N N 279 MET CB C N N 280 MET CG C N N 281 MET SD S N N 282 MET CE C N N 283 MET OXT O N N 284 MET H H N N 285 MET H2 H N N 286 MET HA H N N 287 MET HB2 H N N 288 MET HB3 H N N 289 MET HG2 H N N 290 MET HG3 H N N 291 MET HE1 H N N 292 MET HE2 H N N 293 MET HE3 H N N 294 MET HXT H N N 295 NA NA NA N N 296 PHE N N N N 297 PHE CA C N S 298 PHE C C N N 299 PHE O O N N 300 PHE CB C N N 301 PHE CG C Y N 302 PHE CD1 C Y N 303 PHE CD2 C Y N 304 PHE CE1 C Y N 305 PHE CE2 C Y N 306 PHE CZ C Y N 307 PHE OXT O N N 308 PHE H H N N 309 PHE H2 H N N 310 PHE HA H N N 311 PHE HB2 H N N 312 PHE HB3 H N N 313 PHE HD1 H N N 314 PHE HD2 H N N 315 PHE HE1 H N N 316 PHE HE2 H N N 317 PHE HZ H N N 318 PHE HXT H N N 319 PRO N N N N 320 PRO CA C N S 321 PRO C C N N 322 PRO O O N N 323 PRO CB C N N 324 PRO CG C N N 325 PRO CD C N N 326 PRO OXT O N N 327 PRO H H N N 328 PRO HA H N N 329 PRO HB2 H N N 330 PRO HB3 H N N 331 PRO HG2 H N N 332 PRO HG3 H N N 333 PRO HD2 H N N 334 PRO HD3 H N N 335 PRO HXT H N N 336 SER N N N N 337 SER CA C N S 338 SER C C N N 339 SER O O N N 340 SER CB C N N 341 SER OG O N N 342 SER OXT O N N 343 SER H H N N 344 SER H2 H N N 345 SER HA H N N 346 SER HB2 H N N 347 SER HB3 H N N 348 SER HG H N N 349 SER HXT H N N 350 THR N N N N 351 THR CA C N S 352 THR C C N N 353 THR O O N N 354 THR CB C N R 355 THR OG1 O N N 356 THR CG2 C N N 357 THR OXT O N N 358 THR H H N N 359 THR H2 H N N 360 THR HA H N N 361 THR HB H N N 362 THR HG1 H N N 363 THR HG21 H N N 364 THR HG22 H N N 365 THR HG23 H N N 366 THR HXT H N N 367 TRP N N N N 368 TRP CA C N S 369 TRP C C N N 370 TRP O O N N 371 TRP CB C N N 372 TRP CG C Y N 373 TRP CD1 C Y N 374 TRP CD2 C Y N 375 TRP NE1 N Y N 376 TRP CE2 C Y N 377 TRP CE3 C Y N 378 TRP CZ2 C Y N 379 TRP CZ3 C Y N 380 TRP CH2 C Y N 381 TRP OXT O N N 382 TRP H H N N 383 TRP H2 H N N 384 TRP HA H N N 385 TRP HB2 H N N 386 TRP HB3 H N N 387 TRP HD1 H N N 388 TRP HE1 H N N 389 TRP HE3 H N N 390 TRP HZ2 H N N 391 TRP HZ3 H N N 392 TRP HH2 H N N 393 TRP HXT H N N 394 TYR N N N N 395 TYR CA C N S 396 TYR C C N N 397 TYR O O N N 398 TYR CB C N N 399 TYR CG C Y N 400 TYR CD1 C Y N 401 TYR CD2 C Y N 402 TYR CE1 C Y N 403 TYR CE2 C Y N 404 TYR CZ C Y N 405 TYR OH O N N 406 TYR OXT O N N 407 TYR H H N N 408 TYR H2 H N N 409 TYR HA H N N 410 TYR HB2 H N N 411 TYR HB3 H N N 412 TYR HD1 H N N 413 TYR HD2 H N N 414 TYR HE1 H N N 415 TYR HE2 H N N 416 TYR HH H N N 417 TYR HXT H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CSD N CA sing N N 76 CSD N H sing N N 77 CSD N H2 sing N N 78 CSD CA CB sing N N 79 CSD CA C sing N N 80 CSD CA HA sing N N 81 CSD CB SG sing N N 82 CSD CB HB2 sing N N 83 CSD CB HB3 sing N N 84 CSD SG OD1 doub N N 85 CSD SG OD2 sing N N 86 CSD C O doub N N 87 CSD C OXT sing N N 88 CSD OXT HXT sing N N 89 CSD OD2 HD2 sing N N 90 FME N CN sing N N 91 FME N CA sing N N 92 FME N H sing N N 93 FME CN O1 doub N N 94 FME CN HCN sing N N 95 FME CA CB sing N N 96 FME CA C sing N N 97 FME CA HA sing N N 98 FME CB CG sing N N 99 FME CB HB2 sing N N 100 FME CB HB3 sing N N 101 FME CG SD sing N N 102 FME CG HG2 sing N N 103 FME CG HG3 sing N N 104 FME SD CE sing N N 105 FME CE HE1 sing N N 106 FME CE HE2 sing N N 107 FME CE HE3 sing N N 108 FME C O doub N N 109 FME C OXT sing N N 110 FME OXT HXT sing N N 111 GLN N CA sing N N 112 GLN N H sing N N 113 GLN N H2 sing N N 114 GLN CA C sing N N 115 GLN CA CB sing N N 116 GLN CA HA sing N N 117 GLN C O doub N N 118 GLN C OXT sing N N 119 GLN CB CG sing N N 120 GLN CB HB2 sing N N 121 GLN CB HB3 sing N N 122 GLN CG CD sing N N 123 GLN CG HG2 sing N N 124 GLN CG HG3 sing N N 125 GLN CD OE1 doub N N 126 GLN CD NE2 sing N N 127 GLN NE2 HE21 sing N N 128 GLN NE2 HE22 sing N N 129 GLN OXT HXT sing N N 130 GLU N CA sing N N 131 GLU N H sing N N 132 GLU N H2 sing N N 133 GLU CA C sing N N 134 GLU CA CB sing N N 135 GLU CA HA sing N N 136 GLU C O doub N N 137 GLU C OXT sing N N 138 GLU CB CG sing N N 139 GLU CB HB2 sing N N 140 GLU CB HB3 sing N N 141 GLU CG CD sing N N 142 GLU CG HG2 sing N N 143 GLU CG HG3 sing N N 144 GLU CD OE1 doub N N 145 GLU CD OE2 sing N N 146 GLU OE2 HE2 sing N N 147 GLU OXT HXT sing N N 148 GLY N CA sing N N 149 GLY N H sing N N 150 GLY N H2 sing N N 151 GLY CA C sing N N 152 GLY CA HA2 sing N N 153 GLY CA HA3 sing N N 154 GLY C O doub N N 155 GLY C OXT sing N N 156 GLY OXT HXT sing N N 157 GOL C1 O1 sing N N 158 GOL C1 C2 sing N N 159 GOL C1 H11 sing N N 160 GOL C1 H12 sing N N 161 GOL O1 HO1 sing N N 162 GOL C2 O2 sing N N 163 GOL C2 C3 sing N N 164 GOL C2 H2 sing N N 165 GOL O2 HO2 sing N N 166 GOL C3 O3 sing N N 167 GOL C3 H31 sing N N 168 GOL C3 H32 sing N N 169 GOL O3 HO3 sing N N 170 HIS N CA sing N N 171 HIS N H sing N N 172 HIS N H2 sing N N 173 HIS CA C sing N N 174 HIS CA CB sing N N 175 HIS CA HA sing N N 176 HIS C O doub N N 177 HIS C OXT sing N N 178 HIS CB CG sing N N 179 HIS CB HB2 sing N N 180 HIS CB HB3 sing N N 181 HIS CG ND1 sing Y N 182 HIS CG CD2 doub Y N 183 HIS ND1 CE1 doub Y N 184 HIS ND1 HD1 sing N N 185 HIS CD2 NE2 sing Y N 186 HIS CD2 HD2 sing N N 187 HIS CE1 NE2 sing Y N 188 HIS CE1 HE1 sing N N 189 HIS NE2 HE2 sing N N 190 HIS OXT HXT sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 ILE N CA sing N N 194 ILE N H sing N N 195 ILE N H2 sing N N 196 ILE CA C sing N N 197 ILE CA CB sing N N 198 ILE CA HA sing N N 199 ILE C O doub N N 200 ILE C OXT sing N N 201 ILE CB CG1 sing N N 202 ILE CB CG2 sing N N 203 ILE CB HB sing N N 204 ILE CG1 CD1 sing N N 205 ILE CG1 HG12 sing N N 206 ILE CG1 HG13 sing N N 207 ILE CG2 HG21 sing N N 208 ILE CG2 HG22 sing N N 209 ILE CG2 HG23 sing N N 210 ILE CD1 HD11 sing N N 211 ILE CD1 HD12 sing N N 212 ILE CD1 HD13 sing N N 213 ILE OXT HXT sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FR8 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4NT8 _atom_sites.fract_transf_matrix[1][1] 0.017070 _atom_sites.fract_transf_matrix[1][2] 0.009855 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019710 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003757 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N NA O S # loop_